Wall clock time and date at job start Wed Apr 1 2020 03:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47351 * 2 1 4 4 N 1.46505 * 109.47028 * 120.00161 * 2 1 3 5 5 C 1.34775 * 119.99666 * 154.99856 * 4 2 1 6 6 O 1.21586 * 120.00456 * 359.97438 * 5 4 2 7 7 N 1.34785 * 119.99596 * 179.97438 * 5 4 2 8 8 C 1.47016 * 125.64856 * 0.02562 * 7 5 4 9 9 C 1.54322 * 107.27031 * 178.90472 * 8 7 5 10 10 C 1.55150 * 103.10059 * 337.71947 * 9 8 7 11 11 C 1.47420 * 125.64510 * 179.97438 * 7 5 4 12 12 H 1.09002 * 110.36424 * 85.32702 * 11 7 5 13 13 C 1.50696 * 110.36908 * 323.11220 * 11 7 5 14 14 O 1.21281 * 120.00038 * 341.45406 * 13 11 7 15 15 N 1.34779 * 120.00040 * 161.45303 * 13 11 7 16 16 C 1.39228 * 120.00352 * 174.90163 * 15 13 11 17 17 C 1.39482 * 119.83344 * 325.34268 * 16 15 13 18 18 C 1.36374 * 120.17097 * 179.72210 * 17 16 15 19 19 C 1.40870 * 119.82879 * 0.52084 * 18 17 16 20 20 C 1.41150 * 120.16725 * 179.76698 * 19 18 17 21 21 H 1.07998 * 120.00494 * 205.32591 * 20 19 18 22 22 C 1.39906 * 119.99724 * 25.32718 * 20 19 18 23 23 N 1.30874 * 120.00024 * 16.84452 * 22 20 19 24 24 Si 1.86798 * 120.00336 * 196.84345 * 22 20 19 25 25 H 1.48511 * 109.46713 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47473 * 119.99652 * 24 22 20 27 27 H 1.48499 * 109.47329 * 240.00682 * 24 22 20 28 28 C 1.40870 * 119.67059 * 359.74757 * 19 18 17 29 29 C 1.36383 * 119.82772 * 0.02562 * 28 19 18 30 30 H 1.09002 * 109.46676 * 300.00305 * 1 2 3 31 31 H 1.08997 * 109.47231 * 59.99440 * 1 2 3 32 32 H 1.09001 * 109.47331 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47061 * 239.99986 * 2 1 3 34 34 H 1.08997 * 109.46887 * 300.00486 * 3 2 1 35 35 H 1.08998 * 109.47050 * 59.99979 * 3 2 1 36 36 H 1.09000 * 109.46917 * 180.02562 * 3 2 1 37 37 H 0.97003 * 119.99776 * 334.99646 * 4 2 1 38 38 H 1.09004 * 109.88616 * 59.48670 * 8 7 5 39 39 H 1.09002 * 109.88263 * 298.32193 * 8 7 5 40 40 H 1.09000 * 110.71742 * 96.17143 * 9 8 7 41 41 H 1.09004 * 110.72115 * 219.26046 * 9 8 7 42 42 H 1.09009 * 111.00156 * 153.66905 * 10 9 8 43 43 H 1.09002 * 111.00294 * 277.51466 * 10 9 8 44 44 H 0.97000 * 119.99894 * 354.90080 * 15 13 11 45 45 H 1.08006 * 119.91323 * 359.97438 * 17 16 15 46 46 H 1.08001 * 120.08730 * 180.24850 * 18 17 16 47 47 H 0.96999 * 120.00033 * 179.97438 * 23 22 20 48 48 H 1.07998 * 120.08781 * 179.97438 * 28 19 18 49 49 H 1.07997 * 119.91101 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 3.2403 -1.2592 1.1943 6 8 3.9372 -1.1994 0.1998 7 7 3.6897 -1.8942 2.2950 8 6 2.9545 -2.0413 3.5596 9 6 3.8473 -2.8596 4.5161 10 6 4.7980 -3.6147 3.5500 11 6 4.9996 -2.5571 2.4297 12 1 5.7617 -1.8351 2.7229 13 6 5.3836 -3.2277 1.1360 14 8 4.5365 -3.4645 0.3009 15 7 6.6684 -3.5642 0.9069 16 6 7.0074 -4.2779 -0.2396 17 6 6.1265 -5.2320 -0.7488 18 6 6.4490 -5.9309 -1.8745 19 6 7.6803 -5.6952 -2.5170 20 6 8.0235 -6.4180 -3.6797 21 1 9.0619 -6.5612 -3.9398 22 6 7.0185 -6.9491 -4.4953 23 7 5.7886 -6.5156 -4.3846 24 14 7.4319 -8.2770 -5.7424 25 1 8.8818 -8.5902 -5.6696 26 1 6.6460 -9.5006 -5.4417 27 1 7.0968 -7.7963 -7.1069 28 6 8.5672 -4.7340 -1.9935 29 6 8.2287 -4.0396 -0.8696 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 3.1301 1.4424 -0.0005 37 1 1.4622 -0.7387 1.9895 38 1 2.0173 -2.5695 3.3843 39 1 2.7545 -1.0593 3.9884 40 1 4.4116 -2.2004 5.1756 41 1 3.2487 -3.5623 5.0958 42 1 5.7419 -3.8552 4.0395 43 1 4.3229 -4.5139 3.1578 44 1 7.3570 -3.3092 1.5407 45 1 5.1847 -5.4147 -0.2526 46 1 5.7642 -6.6665 -2.2699 47 1 5.0919 -6.8836 -4.9503 48 1 9.5131 -4.5481 -2.4804 49 1 8.9075 -3.3021 -0.4674 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159020823.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:38 Heat of formation + Delta-G solvation = -35.323450 kcal Electronic energy + Delta-G solvation = -30695.075093 eV Core-core repulsion = 26622.008052 eV Total energy + Delta-G solvation = -4073.067041 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.64686 -39.06852 -37.78513 -36.74350 -35.69049 -34.24912 -32.85005 -32.28872 -30.55312 -29.83941 -29.34129 -28.49654 -27.32932 -25.09491 -23.98426 -22.06947 -21.71241 -21.21046 -20.70799 -19.98736 -19.29456 -18.13980 -17.21707 -17.10489 -16.42655 -15.99858 -15.36623 -15.11477 -14.78985 -14.62415 -14.45536 -14.29726 -13.83728 -13.52411 -13.31383 -13.15671 -13.11837 -12.91267 -12.51304 -12.46967 -12.29987 -12.22572 -11.95479 -11.86614 -11.70250 -11.59865 -11.46099 -11.31173 -11.10547 -11.03834 -11.00083 -10.82015 -10.42083 -9.85880 -9.81832 -9.64631 -9.31661 -9.09891 -8.94183 -8.62091 -8.36615 -7.40605 -6.86817 -6.62505 -4.18447 2.51872 2.72773 3.09599 3.13352 3.19118 3.20648 3.46619 3.49272 3.79896 4.01128 4.10090 4.30676 4.40857 4.66466 4.75573 4.78097 4.98188 5.01782 5.06599 5.16465 5.24405 5.39525 5.43495 5.45660 5.57949 5.58722 5.64724 5.66485 5.81425 5.83300 5.91493 5.96874 6.17252 6.19343 6.27337 6.48773 6.64737 6.93388 7.02194 7.11782 7.16697 7.27307 7.41731 7.70345 7.81483 8.08038 8.10928 8.15685 8.34230 8.46041 8.73624 8.83741 8.99017 9.00041 9.16034 10.30058 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012159 B = 0.002839 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.247245 B = 9861.111842 C =11179.741197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.154 3.846 3 C -0.162 4.162 4 N -0.743 5.743 5 C 0.722 3.278 6 O -0.550 6.550 7 N -0.625 5.625 8 C 0.102 3.898 9 C -0.127 4.127 10 C -0.121 4.121 11 C 0.138 3.862 12 H 0.088 0.912 13 C 0.497 3.503 14 O -0.492 6.492 15 N -0.656 5.656 16 C 0.008 3.992 17 C -0.086 4.086 18 C -0.153 4.153 19 C 0.104 3.896 20 C -0.461 4.461 21 H 0.077 0.923 22 C 0.073 3.927 23 N -0.790 5.790 24 Si 0.907 3.093 25 H -0.261 1.261 26 H -0.273 1.273 27 H -0.275 1.275 28 C -0.214 4.214 29 C -0.107 4.107 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.389 0.611 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.390 0.610 45 H 0.097 0.903 46 H 0.119 0.881 47 H 0.279 0.721 48 H 0.094 0.906 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.838 10.224 18.554 22.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 C -0.220 4.220 4 N -0.399 5.399 5 C 0.424 3.576 6 O -0.424 6.424 7 N -0.365 5.365 8 C -0.021 4.021 9 C -0.165 4.165 10 C -0.160 4.160 11 C 0.030 3.970 12 H 0.106 0.894 13 C 0.281 3.719 14 O -0.364 6.364 15 N -0.300 5.300 16 C -0.084 4.084 17 C -0.106 4.106 18 C -0.173 4.173 19 C 0.101 3.899 20 C -0.491 4.491 21 H 0.095 0.905 22 C -0.144 4.144 23 N -0.416 5.416 24 Si 0.731 3.269 25 H -0.185 1.185 26 H -0.198 1.198 27 H -0.201 1.201 28 C -0.234 4.234 29 C -0.127 4.127 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.222 0.778 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.223 0.777 45 H 0.115 0.885 46 H 0.136 0.864 47 H 0.090 0.910 48 H 0.113 0.887 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.246 10.134 16.976 21.826 hybrid contribution 0.091 -0.295 0.110 0.328 sum -9.156 9.838 17.086 21.738 Atomic orbital electron populations 1.22062 0.94398 1.02581 1.02533 1.20775 0.93330 0.92516 0.88506 1.22194 1.02343 0.95999 1.01499 1.45165 1.17048 1.60687 1.17033 1.15368 0.82035 0.78171 0.82055 1.91051 1.56650 1.63307 1.31345 1.47261 1.17834 1.58720 1.12684 1.21958 0.95859 0.99902 0.84413 1.22593 0.97873 0.98979 0.97086 1.22840 1.01074 0.97587 0.94486 1.21696 0.86287 0.94484 0.94531 0.89377 1.20214 0.83387 0.80247 0.88077 1.90750 1.49246 1.51528 1.44842 1.42878 1.07828 1.55968 1.23355 1.17125 0.97788 1.00520 0.92977 1.20355 0.97504 0.95186 0.97528 1.20963 0.99113 1.02248 0.95006 1.17644 0.91148 0.89414 0.91654 1.19540 0.94040 1.29425 1.06067 0.90467 1.25928 0.94526 0.96090 0.97872 1.69884 1.01947 1.35196 1.34545 0.86291 0.79926 0.80796 0.79842 1.18457 1.19796 1.20071 1.20543 1.01616 1.01739 0.99528 1.20046 0.95867 1.00103 0.96728 0.92421 0.90926 0.91973 0.89154 0.91808 0.92941 0.92014 0.77759 0.91721 0.91613 0.90219 0.89661 0.88882 0.89791 0.77683 0.88491 0.86356 0.90979 0.88744 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.38 37.16 0.35 -0.98 16 2 C 0.15 1.84 3.18 -67.93 -0.22 1.62 16 3 C -0.16 -1.75 9.48 37.16 0.35 -1.39 16 4 N -0.74 -9.27 5.04 -58.67 -0.30 -9.57 16 5 C 0.72 12.13 7.71 -86.91 -0.67 11.46 16 6 O -0.55 -12.37 13.49 -18.42 -0.25 -12.61 16 7 N -0.62 -8.53 3.14 -169.75 -0.53 -9.06 16 8 C 0.10 0.86 6.15 -3.07 -0.02 0.84 16 9 C -0.13 -0.84 6.94 -24.90 -0.17 -1.01 16 10 C -0.12 -1.16 6.53 -24.33 -0.16 -1.32 16 11 C 0.14 1.88 3.57 -67.32 -0.24 1.64 16 12 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 13 C 0.50 9.70 5.87 -10.99 -0.06 9.64 16 14 O -0.49 -12.19 11.74 -18.16 -0.21 -12.40 16 15 N -0.66 -12.54 5.31 -9.74 -0.05 -12.59 16 16 C 0.01 0.19 6.27 -83.58 -0.52 -0.33 16 17 C -0.09 -2.26 8.57 -39.79 -0.34 -2.60 16 18 C -0.15 -4.33 8.63 -39.26 -0.34 -4.66 16 19 C 0.10 2.93 5.57 -106.80 -0.59 2.33 16 20 C -0.46 -12.76 9.04 -37.85 -0.34 -13.10 16 21 H 0.08 2.04 7.90 -52.49 -0.41 1.62 16 22 C 0.07 1.94 5.15 -17.34 -0.09 1.85 16 23 N -0.79 -21.90 10.94 55.55 0.61 -21.29 16 24 Si 0.91 19.46 29.59 -169.99 -5.03 14.43 16 25 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 26 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 27 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 28 C -0.21 -5.50 9.74 -39.26 -0.38 -5.88 16 29 C -0.11 -2.52 9.90 -39.79 -0.39 -2.92 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 1.41 7.58 -51.93 -0.39 1.01 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.39 3.57 7.59 -40.82 -0.31 3.26 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 43 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 44 H 0.39 5.75 8.82 -40.82 -0.36 5.39 16 45 H 0.10 2.57 6.48 -52.48 -0.34 2.23 16 46 H 0.12 3.45 6.18 -52.49 -0.32 3.13 16 47 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 48 H 0.09 2.25 8.06 -52.49 -0.42 1.83 16 49 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 396.94 15.07 5.98 5.98 Total: -1.00 -37.66 396.94 -11.24 -48.90 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -7.61 Total: 13.02 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -3.85 Total: -4.82 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.27 Total: -52.51 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.46 Total: -25.01 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.43 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.66 -11.24 -48.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159020823.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.577 kcal (2) G-P(sol) polarization free energy of solvation -37.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds