Wall clock time and date at job start Wed Apr 1 2020 03:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47351 * 2 1 4 4 N 1.46505 * 109.47028 * 120.00161 * 2 1 3 5 5 C 1.34775 * 119.99666 * 154.99856 * 4 2 1 6 6 O 1.21586 * 120.00456 * 359.97438 * 5 4 2 7 7 N 1.34785 * 119.99596 * 179.97438 * 5 4 2 8 8 C 1.47016 * 125.64856 * 0.02562 * 7 5 4 9 9 C 1.54322 * 107.27031 * 178.90472 * 8 7 5 10 10 C 1.55150 * 103.10059 * 337.71947 * 9 8 7 11 11 C 1.47420 * 125.64510 * 179.97438 * 7 5 4 12 12 H 1.09002 * 110.36424 * 85.32702 * 11 7 5 13 13 C 1.50696 * 110.36908 * 323.11220 * 11 7 5 14 14 O 1.21281 * 120.00038 * 341.45406 * 13 11 7 15 15 N 1.34779 * 120.00040 * 161.45303 * 13 11 7 16 16 C 1.39228 * 120.00352 * 174.90163 * 15 13 11 17 17 C 1.39482 * 119.83344 * 325.34268 * 16 15 13 18 18 C 1.36374 * 120.17097 * 179.72210 * 17 16 15 19 19 C 1.40870 * 119.82879 * 0.52084 * 18 17 16 20 20 C 1.41150 * 120.16725 * 179.76698 * 19 18 17 21 21 H 1.07998 * 120.00494 * 205.32591 * 20 19 18 22 22 C 1.39906 * 119.99724 * 25.32718 * 20 19 18 23 23 N 1.30874 * 120.00024 * 16.84452 * 22 20 19 24 24 Si 1.86798 * 120.00336 * 196.84345 * 22 20 19 25 25 H 1.48511 * 109.46713 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47473 * 119.99652 * 24 22 20 27 27 H 1.48499 * 109.47329 * 240.00682 * 24 22 20 28 28 C 1.40870 * 119.67059 * 359.74757 * 19 18 17 29 29 C 1.36383 * 119.82772 * 0.02562 * 28 19 18 30 30 H 1.09002 * 109.46676 * 300.00305 * 1 2 3 31 31 H 1.08997 * 109.47231 * 59.99440 * 1 2 3 32 32 H 1.09001 * 109.47331 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47061 * 239.99986 * 2 1 3 34 34 H 1.08997 * 109.46887 * 300.00486 * 3 2 1 35 35 H 1.08998 * 109.47050 * 59.99979 * 3 2 1 36 36 H 1.09000 * 109.46917 * 180.02562 * 3 2 1 37 37 H 0.97003 * 119.99776 * 334.99646 * 4 2 1 38 38 H 1.09004 * 109.88616 * 59.48670 * 8 7 5 39 39 H 1.09002 * 109.88263 * 298.32193 * 8 7 5 40 40 H 1.09000 * 110.71742 * 96.17143 * 9 8 7 41 41 H 1.09004 * 110.72115 * 219.26046 * 9 8 7 42 42 H 1.09009 * 111.00156 * 153.66905 * 10 9 8 43 43 H 1.09002 * 111.00294 * 277.51466 * 10 9 8 44 44 H 0.97000 * 119.99894 * 354.90080 * 15 13 11 45 45 H 1.08006 * 119.91323 * 359.97438 * 17 16 15 46 46 H 1.08001 * 120.08730 * 180.24850 * 18 17 16 47 47 H 0.96999 * 120.00033 * 179.97438 * 23 22 20 48 48 H 1.07998 * 120.08781 * 179.97438 * 28 19 18 49 49 H 1.07997 * 119.91101 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 3.2403 -1.2592 1.1943 6 8 3.9372 -1.1994 0.1998 7 7 3.6897 -1.8942 2.2950 8 6 2.9545 -2.0413 3.5596 9 6 3.8473 -2.8596 4.5161 10 6 4.7980 -3.6147 3.5500 11 6 4.9996 -2.5571 2.4297 12 1 5.7617 -1.8351 2.7229 13 6 5.3836 -3.2277 1.1360 14 8 4.5365 -3.4645 0.3009 15 7 6.6684 -3.5642 0.9069 16 6 7.0074 -4.2779 -0.2396 17 6 6.1265 -5.2320 -0.7488 18 6 6.4490 -5.9309 -1.8745 19 6 7.6803 -5.6952 -2.5170 20 6 8.0235 -6.4180 -3.6797 21 1 9.0619 -6.5612 -3.9398 22 6 7.0185 -6.9491 -4.4953 23 7 5.7886 -6.5156 -4.3846 24 14 7.4319 -8.2770 -5.7424 25 1 8.8818 -8.5902 -5.6696 26 1 6.6460 -9.5006 -5.4417 27 1 7.0968 -7.7963 -7.1069 28 6 8.5672 -4.7340 -1.9935 29 6 8.2287 -4.0396 -0.8696 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 3.1301 1.4424 -0.0005 37 1 1.4622 -0.7387 1.9895 38 1 2.0173 -2.5695 3.3843 39 1 2.7545 -1.0593 3.9884 40 1 4.4116 -2.2004 5.1756 41 1 3.2487 -3.5623 5.0958 42 1 5.7419 -3.8552 4.0395 43 1 4.3229 -4.5139 3.1578 44 1 7.3570 -3.3092 1.5407 45 1 5.1847 -5.4147 -0.2526 46 1 5.7642 -6.6665 -2.2699 47 1 5.0919 -6.8836 -4.9503 48 1 9.5131 -4.5481 -2.4804 49 1 8.9075 -3.3021 -0.4674 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159020823.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:36 Heat of formation + Delta-G solvation = -61.136316 kcal Electronic energy + Delta-G solvation = -30696.194423 eV Core-core repulsion = 26622.008052 eV Total energy + Delta-G solvation = -4074.186371 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.88097 -40.60646 -39.21033 -38.25015 -36.83704 -36.11759 -34.71865 -33.35854 -31.61598 -31.36359 -31.17116 -29.98998 -28.12756 -26.88786 -25.11779 -23.56099 -23.15221 -22.45517 -22.11728 -21.32854 -20.68509 -19.42942 -19.23141 -18.23572 -18.02223 -17.23327 -17.05820 -16.55056 -16.06959 -15.80526 -15.71608 -15.61376 -15.31484 -14.88741 -14.72407 -14.45676 -14.21626 -14.16743 -13.96742 -13.87937 -13.71436 -13.36422 -13.25401 -13.14334 -13.06822 -12.83587 -12.73517 -12.64544 -12.33879 -12.32250 -12.24428 -11.93421 -11.75214 -11.72160 -11.62412 -11.23470 -11.17745 -10.74361 -10.45520 -10.11945 -9.53661 -9.45911 -8.85640 -8.61149 -6.28023 0.82423 1.11228 1.35675 1.42345 1.48412 1.53220 1.92565 2.19250 2.21159 2.43940 2.76841 3.09251 3.53104 3.59220 3.72502 3.88663 3.91217 4.11493 4.13720 4.19295 4.29489 4.40839 4.42085 4.45871 4.70088 4.71510 4.72948 4.84288 4.87389 4.89364 4.93995 4.99774 5.08237 5.08756 5.17212 5.18643 5.24936 5.28954 5.29905 5.34973 5.45057 5.63385 5.65697 5.85983 6.02531 6.07122 6.11494 6.33278 6.66232 6.79984 6.91301 7.00344 7.04841 7.51782 7.70735 8.33862 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012159 B = 0.002839 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.247245 B = 9861.111842 C =11179.741197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.148 3.852 3 C -0.152 4.152 4 N -0.727 5.727 5 C 0.710 3.290 6 O -0.619 6.619 7 N -0.629 5.629 8 C 0.092 3.908 9 C -0.112 4.112 10 C -0.116 4.116 11 C 0.138 3.862 12 H 0.116 0.884 13 C 0.489 3.511 14 O -0.551 6.551 15 N -0.648 5.648 16 C 0.019 3.981 17 C -0.099 4.099 18 C -0.178 4.178 19 C 0.071 3.929 20 C -0.494 4.494 21 H 0.083 0.917 22 C 0.026 3.974 23 N -0.834 5.834 24 Si 0.989 3.011 25 H -0.251 1.251 26 H -0.265 1.265 27 H -0.267 1.267 28 C -0.222 4.222 29 C -0.105 4.105 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.026 0.974 37 H 0.408 0.592 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.123 0.877 43 H 0.058 0.942 44 H 0.416 0.584 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.285 0.715 48 H 0.111 0.889 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.863 11.489 21.768 26.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.043 3.957 3 C -0.211 4.211 4 N -0.384 5.384 5 C 0.411 3.589 6 O -0.498 6.498 7 N -0.368 5.368 8 C -0.030 4.030 9 C -0.149 4.149 10 C -0.155 4.155 11 C 0.030 3.970 12 H 0.134 0.866 13 C 0.276 3.724 14 O -0.427 6.427 15 N -0.294 5.294 16 C -0.075 4.075 17 C -0.120 4.120 18 C -0.198 4.198 19 C 0.069 3.931 20 C -0.524 4.524 21 H 0.101 0.899 22 C -0.187 4.187 23 N -0.461 5.461 24 Si 0.809 3.191 25 H -0.174 1.174 26 H -0.190 1.190 27 H -0.192 1.192 28 C -0.242 4.242 29 C -0.125 4.125 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.046 0.954 37 H 0.245 0.755 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.142 0.858 43 H 0.077 0.923 44 H 0.253 0.747 45 H 0.103 0.897 46 H 0.113 0.887 47 H 0.096 0.904 48 H 0.129 0.871 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.286 11.423 20.312 25.085 hybrid contribution 0.049 -0.579 -0.765 0.961 sum -9.237 10.844 19.546 24.186 Atomic orbital electron populations 1.21991 0.91086 1.02796 1.04543 1.20848 0.95783 0.92535 0.86578 1.22106 1.00042 0.95444 1.03489 1.45021 1.15893 1.59672 1.17850 1.15776 0.82640 0.78396 0.82040 1.90994 1.58731 1.65893 1.34203 1.47416 1.18411 1.57459 1.13536 1.22363 0.95943 1.02147 0.82501 1.22640 0.97069 0.99047 0.96148 1.22907 1.03355 0.95582 0.93625 1.21945 0.87238 0.95837 0.91950 0.86606 1.21428 0.82435 0.78985 0.89560 1.90730 1.50836 1.53737 1.47368 1.42826 1.08984 1.55207 1.22418 1.17237 0.97107 0.99237 0.93931 1.20368 0.97724 0.96323 0.97538 1.20860 0.99608 1.03106 0.96270 1.17996 0.91704 0.90841 0.92590 1.19837 0.94747 1.31091 1.06724 0.89886 1.26938 0.93925 0.97952 0.99895 1.69981 1.03288 1.36751 1.36033 0.85067 0.80056 0.77182 0.76778 1.17409 1.19019 1.19197 1.20841 1.01870 1.01245 1.00286 1.20420 0.96162 1.00104 0.95820 0.89501 0.89758 0.92661 0.94175 0.90457 0.90232 0.95435 0.75525 0.91372 0.88660 0.87371 0.87428 0.85849 0.92313 0.74739 0.89733 0.88683 0.90418 0.87090 0.85058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.38 71.98 0.68 -1.59 16 2 C 0.15 3.63 3.18 44.99 0.14 3.77 16 3 C -0.15 -3.26 9.48 71.98 0.68 -2.57 16 4 N -0.73 -18.06 5.04 -457.80 -2.31 -20.36 16 5 C 0.71 24.44 7.71 179.05 1.38 25.82 16 6 O -0.62 -29.63 13.49 18.68 0.25 -29.38 16 7 N -0.63 -16.48 3.14 -809.22 -2.54 -19.02 16 8 C 0.09 1.24 6.15 86.73 0.53 1.77 16 9 C -0.11 -0.94 6.94 31.78 0.22 -0.72 16 10 C -0.12 -1.88 6.53 32.15 0.21 -1.67 16 11 C 0.14 3.55 3.57 44.88 0.16 3.71 16 12 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 13 C 0.49 19.42 5.87 87.66 0.51 19.93 16 14 O -0.55 -28.92 11.74 19.64 0.23 -28.69 16 15 N -0.65 -24.55 5.31 -303.12 -1.61 -26.16 16 16 C 0.02 0.90 6.27 38.57 0.24 1.14 16 17 C -0.10 -5.56 8.57 22.13 0.19 -5.37 16 18 C -0.18 -10.76 8.63 22.48 0.19 -10.57 16 19 C 0.07 4.19 5.57 -21.28 -0.12 4.08 16 20 C -0.49 -28.46 9.04 23.39 0.21 -28.25 16 21 H 0.08 4.50 7.90 -2.91 -0.02 4.48 16 22 C 0.03 1.45 5.15 85.24 0.44 1.89 16 23 N -0.83 -48.80 10.94 21.82 0.24 -48.56 16 24 Si 0.99 40.96 29.59 68.60 2.03 42.99 16 25 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 26 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 27 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 28 C -0.22 -11.60 9.74 22.48 0.22 -11.38 16 29 C -0.11 -4.90 9.90 22.14 0.22 -4.68 16 30 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.04 1.39 7.58 -2.39 -0.02 1.37 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.41 6.74 7.59 -92.71 -0.70 6.04 16 38 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.11 0.53 8.14 -2.39 -0.02 0.52 16 42 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 43 H 0.06 1.27 8.06 -2.39 -0.02 1.25 16 44 H 0.42 11.36 8.82 -92.71 -0.82 10.54 16 45 H 0.08 4.85 6.48 -2.91 -0.02 4.83 16 46 H 0.10 6.04 6.18 -2.91 -0.02 6.02 16 47 H 0.29 15.16 8.30 -92.71 -0.77 14.39 16 48 H 0.11 5.29 8.06 -2.91 -0.02 5.27 16 49 H 0.13 4.95 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -93.26 396.94 1.87 -91.39 By element: Atomic # 1 Polarization: 43.05 SS G_CDS: -0.55 Total: 42.51 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 6.12 Total: -4.71 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -6.21 Total: -114.11 kcal Atomic # 8 Polarization: -58.56 SS G_CDS: 0.48 Total: -58.07 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -93.26 1.87 -91.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159020823.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.252 kcal (2) G-P(sol) polarization free energy of solvation -93.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds