Wall clock time and date at job start Wed Apr 1 2020 03:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46630 * 2 1 4 4 N 1.46502 * 109.47050 * 185.38736 * 3 2 1 5 5 C 1.37104 * 120.00033 * 85.35267 * 4 3 2 6 6 H 1.07999 * 119.99997 * 170.36020 * 5 4 3 7 7 C 1.38945 * 120.00136 * 350.63947 * 5 4 3 8 8 N 1.31412 * 119.99804 * 3.08474 * 7 5 4 9 9 Si 1.86803 * 120.00122 * 183.09024 * 7 5 4 10 10 H 1.48496 * 109.47017 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47071 * 119.99905 * 9 7 5 12 12 H 1.48502 * 109.46959 * 239.99457 * 9 7 5 13 13 C 1.34778 * 120.00373 * 265.35968 * 4 3 2 14 14 O 1.21294 * 119.99650 * 5.81935 * 13 4 3 15 15 C 1.50695 * 120.00519 * 185.82237 * 13 4 3 16 16 H 1.09009 * 109.49487 * 310.12411 * 15 13 4 17 17 C 1.53041 * 109.49743 * 190.03116 * 15 13 4 18 18 C 1.53044 * 109.53486 * 178.68352 * 17 15 13 19 19 C 1.53188 * 109.31630 * 61.36220 * 18 17 15 20 20 N 1.46927 * 108.77352 * 305.36210 * 19 18 17 21 21 C 1.34780 * 120.63307 * 233.58582 * 20 19 18 22 22 O 1.21509 * 120.00078 * 184.74777 * 21 20 19 23 23 C 1.48148 * 119.99553 * 4.74897 * 21 20 19 24 24 C 1.39814 * 120.92484 * 318.60313 * 23 21 20 25 25 C 1.38147 * 119.00203 * 179.75773 * 24 23 21 26 26 N 1.31815 * 120.89458 * 0.53374 * 25 24 23 27 27 C 1.31809 * 122.04725 * 359.74423 * 26 25 24 28 28 C 1.38142 * 120.89753 * 359.96858 * 27 26 25 29 29 C 1.46925 * 118.73928 * 53.61275 * 20 19 18 30 30 H 1.09007 * 109.46938 * 299.99920 * 1 2 3 31 31 H 1.08993 * 109.47444 * 60.00105 * 1 2 3 32 32 H 1.09001 * 109.46545 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47384 * 239.99925 * 2 1 3 34 34 H 1.08997 * 109.47104 * 119.99566 * 2 1 3 35 35 H 1.08992 * 109.47415 * 65.39097 * 3 2 1 36 36 H 1.08999 * 109.47244 * 305.38435 * 3 2 1 37 37 H 0.97008 * 120.00068 * 180.02562 * 8 7 5 38 38 H 1.09000 * 109.45373 * 298.69588 * 17 15 13 39 39 H 1.08992 * 109.46263 * 58.65847 * 17 15 13 40 40 H 1.08997 * 109.49724 * 301.40385 * 18 17 15 41 41 H 1.08999 * 109.49613 * 181.31652 * 18 17 15 42 42 H 1.08994 * 109.58837 * 185.57730 * 19 18 17 43 43 H 1.08998 * 109.58513 * 65.14913 * 19 18 17 44 44 H 1.07999 * 120.49855 * 0.02562 * 24 23 21 45 45 H 1.08001 * 119.55238 * 180.27837 * 25 24 23 46 46 H 1.07999 * 119.54992 * 179.97438 * 27 26 25 47 47 H 1.08003 * 120.49863 * 180.02562 * 28 27 26 48 48 H 1.08998 * 109.59139 * 186.60457 * 29 20 19 49 49 H 1.08999 * 109.59037 * 66.17086 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.4992 1.4447 -0.1297 5 6 4.0771 1.3866 -1.3716 6 1 5.1400 1.5442 -1.4805 7 6 3.2945 1.1306 -2.4908 8 7 1.9923 1.0044 -2.3671 9 14 4.0934 0.9657 -4.1713 10 1 5.5613 1.1491 -4.0417 11 1 3.8095 -0.3830 -4.7242 12 1 3.5444 2.0004 -5.0841 13 6 4.2736 1.5037 0.9718 14 8 3.7674 1.4485 2.0727 15 6 5.7683 1.6383 0.8358 16 1 6.1389 0.8888 0.1363 17 6 6.4262 1.4321 2.2021 18 6 7.9464 1.5361 2.0591 19 6 8.3132 2.9342 1.5518 20 7 7.5711 3.1969 0.3113 21 6 8.2177 3.5773 -0.8084 22 8 7.5866 3.8749 -1.8032 23 6 9.6981 3.6326 -0.8262 24 6 10.4113 4.1405 0.2639 25 6 11.7913 4.1687 0.2069 26 7 12.4337 3.7353 -0.8594 27 6 11.7999 3.2543 -1.9103 28 6 10.4205 3.1839 -1.9359 29 6 6.1105 3.0376 0.3146 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3632 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.7575 1.9278 0.9342 36 1 1.5999 1.9835 -0.8378 37 1 1.4460 0.8253 -3.1484 38 1 6.0735 2.1969 2.8940 39 1 6.1641 0.4464 2.5863 40 1 8.2970 0.7876 1.3485 41 1 8.4155 1.3660 3.0282 42 1 9.3840 2.9819 1.3541 43 1 8.0447 3.6774 2.3026 44 1 9.8913 4.5012 1.1390 45 1 12.3513 4.5550 1.0458 46 1 12.3668 2.9104 -2.7628 47 1 9.9078 2.7881 -2.8002 48 1 5.7279 3.1534 -0.6994 49 1 5.6623 3.7891 0.9645 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172863201.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:27 Heat of formation + Delta-G solvation = -8.709159 kcal Electronic energy + Delta-G solvation = -31489.903911 eV Core-core repulsion = 27417.990952 eV Total energy + Delta-G solvation = -4071.912959 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.00388 -39.64746 -38.61338 -36.95563 -35.27648 -33.49984 -32.29087 -32.20745 -31.65195 -31.47099 -30.51470 -26.14527 -25.93416 -24.96263 -23.89182 -23.80374 -22.93739 -21.31112 -20.28532 -19.49090 -19.01553 -17.87170 -16.82823 -16.78717 -16.37070 -16.12271 -15.80160 -15.22463 -14.95329 -14.54242 -14.34060 -14.18747 -14.01020 -13.90746 -13.82164 -13.58775 -13.33307 -12.96993 -12.92907 -12.71995 -12.38854 -12.02746 -11.93158 -11.49242 -11.36946 -11.13710 -11.03458 -10.91037 -10.73780 -10.51882 -10.35750 -10.33586 -10.25862 -10.18727 -10.07773 -9.99235 -9.66039 -9.55828 -9.35962 -8.81391 -8.64220 -8.30814 -7.77133 -6.21331 -3.91964 0.61104 0.80805 2.66406 2.92902 3.10894 3.22649 3.28147 3.55291 3.84583 4.07430 4.13880 4.20261 4.54045 4.62773 4.68533 4.79082 4.94020 4.99634 5.04907 5.11386 5.24481 5.39816 5.46117 5.47964 5.56639 5.61386 5.70547 5.82163 5.93731 5.96213 6.12081 6.18542 6.20349 6.26761 6.30372 6.32053 6.48650 6.56231 6.59277 6.71059 6.77686 6.94989 7.12242 7.17742 7.32932 7.39801 7.56996 7.63074 7.75402 7.88684 8.11299 8.46913 9.06069 9.51885 9.90170 10.61167 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013757 B = 0.003561 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.784548 B = 7860.355181 C = 9470.835600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 C 0.130 3.870 4 N -0.437 5.437 5 C -0.325 4.325 6 H 0.102 0.898 7 C 0.035 3.965 8 N -0.863 5.863 9 Si 0.921 3.079 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.453 3.547 14 O -0.609 6.609 15 C -0.101 4.101 16 H 0.088 0.912 17 C -0.097 4.097 18 C -0.135 4.135 19 C 0.085 3.915 20 N -0.597 5.597 21 C 0.553 3.447 22 O -0.519 6.519 23 C -0.073 4.073 24 C -0.152 4.152 25 C 0.095 3.905 26 N -0.476 5.476 27 C 0.098 3.902 28 C -0.122 4.122 29 C 0.121 3.879 30 H 0.034 0.966 31 H 0.057 0.943 32 H 0.033 0.967 33 H 0.082 0.918 34 H 0.023 0.977 35 H 0.030 0.970 36 H 0.121 0.879 37 H 0.265 0.735 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.148 0.852 45 H 0.161 0.839 46 H 0.163 0.837 47 H 0.145 0.855 48 H 0.114 0.886 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.593 3.247 4.129 15.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.144 4.144 3 C 0.008 3.992 4 N -0.153 5.153 5 C -0.453 4.453 6 H 0.119 0.881 7 C -0.169 4.169 8 N -0.503 5.503 9 Si 0.748 3.252 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.206 1.206 13 C 0.241 3.759 14 O -0.496 6.496 15 C -0.123 4.123 16 H 0.107 0.893 17 C -0.135 4.135 18 C -0.173 4.173 19 C -0.038 4.038 20 N -0.330 5.330 21 C 0.339 3.661 22 O -0.394 6.394 23 C -0.084 4.084 24 C -0.172 4.172 25 C -0.062 4.062 26 N -0.185 5.185 27 C -0.059 4.059 28 C -0.143 4.143 29 C -0.001 4.001 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.101 0.899 34 H 0.042 0.958 35 H 0.049 0.951 36 H 0.138 0.862 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.114 0.886 43 H 0.092 0.908 44 H 0.166 0.834 45 H 0.179 0.821 46 H 0.180 0.820 47 H 0.163 0.837 48 H 0.132 0.868 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.684 3.389 3.942 15.577 hybrid contribution -0.657 -0.293 -0.878 1.135 sum 14.028 3.097 3.064 14.689 Atomic orbital electron populations 1.21553 0.97510 0.99418 1.00602 1.21654 0.93950 0.98460 1.00321 1.21729 0.79829 0.97263 1.00384 1.43910 1.05796 1.60692 1.04920 1.19848 0.94625 1.47885 0.82925 0.88079 1.25224 0.95451 0.96317 0.99862 1.70161 1.03725 1.46895 1.29539 0.85923 0.79650 0.77826 0.81827 1.19167 1.20733 1.20588 1.19713 0.87726 0.84004 0.84495 1.90522 1.74967 1.58009 1.26140 1.21349 0.95149 0.97828 0.97991 0.89337 1.21300 0.92559 1.03130 0.96516 1.21964 0.97652 0.96321 1.01359 1.22401 0.97424 0.97828 0.86130 1.48060 1.08421 1.66460 1.10068 1.18248 0.86506 0.78086 0.83227 1.90850 1.67559 1.47763 1.33256 1.20429 0.94111 0.98798 0.95061 1.22536 0.95981 1.00149 0.98549 1.22759 0.91259 0.95968 0.96221 1.67556 1.41626 1.08813 1.00509 1.22783 0.91366 0.95327 0.96388 1.22298 0.95350 0.98456 0.98174 1.21753 0.77355 0.95955 1.04997 0.94663 0.92391 0.94744 0.89938 0.95809 0.95137 0.86201 0.92395 0.91249 0.91332 0.91597 0.90654 0.88584 0.90808 0.83417 0.82134 0.82030 0.83709 0.86756 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 9.91 37.16 0.37 -2.22 16 2 C -0.11 -2.42 5.43 -26.73 -0.15 -2.57 16 3 C 0.13 3.18 4.68 -4.04 -0.02 3.16 16 4 N -0.44 -10.77 2.63 -114.81 -0.30 -11.07 16 5 C -0.33 -8.00 8.51 -14.93 -0.13 -8.13 16 6 H 0.10 2.44 5.00 -52.49 -0.26 2.18 16 7 C 0.03 0.85 5.24 -17.47 -0.09 0.75 16 8 N -0.86 -21.12 7.48 55.50 0.42 -20.71 16 9 Si 0.92 19.84 29.55 -169.99 -5.02 14.82 16 10 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 C 0.45 10.62 6.90 -10.99 -0.08 10.54 16 14 O -0.61 -15.67 15.57 5.55 0.09 -15.59 16 15 C -0.10 -1.91 1.82 -91.65 -0.17 -2.07 16 16 H 0.09 1.74 7.25 -51.92 -0.38 1.37 16 17 C -0.10 -1.52 4.50 -26.69 -0.12 -1.64 16 18 C -0.13 -1.56 6.08 -26.61 -0.16 -1.73 16 19 C 0.08 0.92 5.18 -3.71 -0.02 0.90 16 20 N -0.60 -8.81 2.97 -173.77 -0.52 -9.33 16 21 C 0.55 8.73 7.40 -12.19 -0.09 8.64 16 22 O -0.52 -10.34 16.40 5.36 0.09 -10.26 16 23 C -0.07 -0.90 5.36 -104.65 -0.56 -1.46 16 24 C -0.15 -1.42 7.47 -39.03 -0.29 -1.71 16 25 C 0.09 0.83 11.17 -17.59 -0.20 0.63 16 26 N -0.48 -4.98 10.34 -13.31 -0.14 -5.11 16 27 C 0.10 0.96 11.17 -17.60 -0.20 0.77 16 28 C -0.12 -1.39 9.78 -39.03 -0.38 -1.77 16 29 C 0.12 2.17 5.39 -3.71 -0.02 2.15 16 30 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 2.05 6.34 -51.93 -0.33 1.72 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.03 0.76 7.37 -51.93 -0.38 0.37 16 36 H 0.12 3.05 5.70 -51.93 -0.30 2.76 16 37 H 0.26 6.22 8.31 -40.82 -0.34 5.88 16 38 H 0.07 1.12 8.03 -51.93 -0.42 0.70 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.10 0.85 3.88 -51.93 -0.20 0.65 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.15 1.08 6.17 -52.49 -0.32 0.76 16 45 H 0.16 0.90 8.06 -52.49 -0.42 0.47 16 46 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 47 H 0.15 1.62 8.06 -52.48 -0.42 1.20 16 48 H 0.11 2.39 5.08 -51.93 -0.26 2.13 16 49 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 382.82 15.07 5.77 5.77 Total: -1.00 -30.50 382.82 -8.98 -39.48 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.06 Total: 7.77 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -2.29 Total: 4.23 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -0.54 Total: -46.22 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: 0.17 Total: -25.84 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.50 -8.98 -39.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172863201.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.769 kcal (2) G-P(sol) polarization free energy of solvation -30.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds