Wall clock time and date at job start Wed Apr 1 2020 03:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46630 * 2 1 4 4 N 1.46502 * 109.47050 * 185.38736 * 3 2 1 5 5 C 1.37104 * 120.00033 * 85.35267 * 4 3 2 6 6 H 1.07999 * 119.99997 * 170.36020 * 5 4 3 7 7 C 1.38945 * 120.00136 * 350.63947 * 5 4 3 8 8 N 1.31412 * 119.99804 * 3.08474 * 7 5 4 9 9 Si 1.86803 * 120.00122 * 183.09024 * 7 5 4 10 10 H 1.48496 * 109.47017 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47071 * 119.99905 * 9 7 5 12 12 H 1.48502 * 109.46959 * 239.99457 * 9 7 5 13 13 C 1.34778 * 120.00373 * 265.35968 * 4 3 2 14 14 O 1.21294 * 119.99650 * 5.81935 * 13 4 3 15 15 C 1.50695 * 120.00519 * 185.82237 * 13 4 3 16 16 H 1.09009 * 109.49487 * 310.12411 * 15 13 4 17 17 C 1.53041 * 109.49743 * 190.03116 * 15 13 4 18 18 C 1.53044 * 109.53486 * 178.68352 * 17 15 13 19 19 C 1.53188 * 109.31630 * 61.36220 * 18 17 15 20 20 N 1.46927 * 108.77352 * 305.36210 * 19 18 17 21 21 C 1.34780 * 120.63307 * 233.58582 * 20 19 18 22 22 O 1.21509 * 120.00078 * 184.74777 * 21 20 19 23 23 C 1.48148 * 119.99553 * 4.74897 * 21 20 19 24 24 C 1.39814 * 120.92484 * 318.60313 * 23 21 20 25 25 C 1.38147 * 119.00203 * 179.75773 * 24 23 21 26 26 N 1.31815 * 120.89458 * 0.53374 * 25 24 23 27 27 C 1.31809 * 122.04725 * 359.74423 * 26 25 24 28 28 C 1.38142 * 120.89753 * 359.96858 * 27 26 25 29 29 C 1.46925 * 118.73928 * 53.61275 * 20 19 18 30 30 H 1.09007 * 109.46938 * 299.99920 * 1 2 3 31 31 H 1.08993 * 109.47444 * 60.00105 * 1 2 3 32 32 H 1.09001 * 109.46545 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47384 * 239.99925 * 2 1 3 34 34 H 1.08997 * 109.47104 * 119.99566 * 2 1 3 35 35 H 1.08992 * 109.47415 * 65.39097 * 3 2 1 36 36 H 1.08999 * 109.47244 * 305.38435 * 3 2 1 37 37 H 0.97008 * 120.00068 * 180.02562 * 8 7 5 38 38 H 1.09000 * 109.45373 * 298.69588 * 17 15 13 39 39 H 1.08992 * 109.46263 * 58.65847 * 17 15 13 40 40 H 1.08997 * 109.49724 * 301.40385 * 18 17 15 41 41 H 1.08999 * 109.49613 * 181.31652 * 18 17 15 42 42 H 1.08994 * 109.58837 * 185.57730 * 19 18 17 43 43 H 1.08998 * 109.58513 * 65.14913 * 19 18 17 44 44 H 1.07999 * 120.49855 * 0.02562 * 24 23 21 45 45 H 1.08001 * 119.55238 * 180.27837 * 25 24 23 46 46 H 1.07999 * 119.54992 * 179.97438 * 27 26 25 47 47 H 1.08003 * 120.49863 * 180.02562 * 28 27 26 48 48 H 1.08998 * 109.59139 * 186.60457 * 29 20 19 49 49 H 1.08999 * 109.59037 * 66.17086 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.4992 1.4447 -0.1297 5 6 4.0771 1.3866 -1.3716 6 1 5.1400 1.5442 -1.4805 7 6 3.2945 1.1306 -2.4908 8 7 1.9923 1.0044 -2.3671 9 14 4.0934 0.9657 -4.1713 10 1 5.5613 1.1491 -4.0417 11 1 3.8095 -0.3830 -4.7242 12 1 3.5444 2.0004 -5.0841 13 6 4.2736 1.5037 0.9718 14 8 3.7674 1.4485 2.0727 15 6 5.7683 1.6383 0.8358 16 1 6.1389 0.8888 0.1363 17 6 6.4262 1.4321 2.2021 18 6 7.9464 1.5361 2.0591 19 6 8.3132 2.9342 1.5518 20 7 7.5711 3.1969 0.3113 21 6 8.2177 3.5773 -0.8084 22 8 7.5866 3.8749 -1.8032 23 6 9.6981 3.6326 -0.8262 24 6 10.4113 4.1405 0.2639 25 6 11.7913 4.1687 0.2069 26 7 12.4337 3.7353 -0.8594 27 6 11.7999 3.2543 -1.9103 28 6 10.4205 3.1839 -1.9359 29 6 6.1105 3.0376 0.3146 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3632 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.7575 1.9278 0.9342 36 1 1.5999 1.9835 -0.8378 37 1 1.4460 0.8253 -3.1484 38 1 6.0735 2.1969 2.8940 39 1 6.1641 0.4464 2.5863 40 1 8.2970 0.7876 1.3485 41 1 8.4155 1.3660 3.0282 42 1 9.3840 2.9819 1.3541 43 1 8.0447 3.6774 2.3026 44 1 9.8913 4.5012 1.1390 45 1 12.3513 4.5550 1.0458 46 1 12.3668 2.9104 -2.7628 47 1 9.9078 2.7881 -2.8002 48 1 5.7279 3.1534 -0.6994 49 1 5.6623 3.7891 0.9645 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172863201.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:26 Heat of formation + Delta-G solvation = -26.230113 kcal Electronic energy + Delta-G solvation = -31490.663676 eV Core-core repulsion = 27417.990952 eV Total energy + Delta-G solvation = -4072.672725 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.05185 -40.96791 -40.05566 -38.33954 -37.15177 -34.71281 -33.93980 -33.45327 -33.29033 -32.41492 -31.78152 -27.72962 -27.28078 -26.66678 -25.06727 -24.74870 -24.08303 -22.67204 -21.90402 -21.01785 -20.52827 -19.16796 -18.33630 -18.03848 -17.78316 -17.17092 -16.93208 -16.34498 -16.24407 -16.16164 -15.89895 -15.64191 -15.40922 -15.12432 -14.88137 -14.78667 -14.67955 -14.59998 -14.19920 -14.01765 -13.86532 -13.57815 -13.23477 -13.14626 -12.79914 -12.73922 -12.51740 -12.32849 -12.29524 -12.11807 -12.01844 -11.90009 -11.78582 -11.61961 -11.54408 -11.44384 -10.89300 -10.74753 -10.47239 -10.29310 -10.08784 -9.79331 -9.71181 -8.12791 -5.87800 -0.25743 0.08135 1.32900 1.42584 1.48536 1.53247 1.77235 2.03112 2.25793 2.77112 2.96299 3.13280 3.21063 3.52614 3.80045 3.81696 3.88733 3.93149 3.93787 4.01654 4.09130 4.18739 4.30138 4.44878 4.50780 4.52018 4.54880 4.65998 4.71832 4.74360 4.76359 4.77900 4.81565 4.91401 4.92823 5.01596 5.08518 5.12832 5.20544 5.30189 5.34225 5.39763 5.41579 5.43634 5.60987 5.65408 5.80473 5.93529 6.23644 6.52583 6.90728 6.91194 7.12319 7.59745 7.98471 8.70496 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013757 B = 0.003561 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.784548 B = 7860.355181 C = 9470.835600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.095 4.095 3 C 0.133 3.867 4 N -0.449 5.449 5 C -0.339 4.339 6 H 0.100 0.900 7 C 0.001 3.999 8 N -0.873 5.873 9 Si 0.978 3.022 10 H -0.275 1.275 11 H -0.274 1.274 12 H -0.280 1.280 13 C 0.442 3.558 14 O -0.636 6.636 15 C -0.091 4.091 16 H 0.076 0.924 17 C -0.092 4.092 18 C -0.125 4.125 19 C 0.080 3.920 20 N -0.594 5.594 21 C 0.549 3.451 22 O -0.574 6.574 23 C -0.090 4.090 24 C -0.143 4.143 25 C 0.104 3.896 26 N -0.490 5.490 27 C 0.103 3.897 28 C -0.137 4.137 29 C 0.133 3.867 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.008 0.992 35 H 0.018 0.982 36 H 0.110 0.890 37 H 0.268 0.732 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.114 0.886 42 H 0.125 0.875 43 H 0.098 0.902 44 H 0.174 0.826 45 H 0.200 0.800 46 H 0.186 0.814 47 H 0.135 0.865 48 H 0.079 0.921 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.291 3.471 5.269 18.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.133 4.133 3 C 0.010 3.990 4 N -0.166 5.166 5 C -0.467 4.467 6 H 0.117 0.883 7 C -0.201 4.201 8 N -0.513 5.513 9 Si 0.803 3.197 10 H -0.200 1.200 11 H -0.199 1.199 12 H -0.205 1.205 13 C 0.231 3.769 14 O -0.525 6.525 15 C -0.113 4.113 16 H 0.094 0.906 17 C -0.130 4.130 18 C -0.163 4.163 19 C -0.040 4.040 20 N -0.325 5.325 21 C 0.338 3.662 22 O -0.453 6.453 23 C -0.102 4.102 24 C -0.163 4.163 25 C -0.053 4.053 26 N -0.199 5.199 27 C -0.054 4.054 28 C -0.158 4.158 29 C 0.009 3.991 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.027 0.973 35 H 0.037 0.963 36 H 0.127 0.873 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.132 0.868 42 H 0.143 0.857 43 H 0.116 0.884 44 H 0.191 0.809 45 H 0.216 0.784 46 H 0.203 0.797 47 H 0.153 0.847 48 H 0.097 0.903 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 17.400 3.599 5.106 18.487 hybrid contribution -1.500 -0.335 -1.188 1.943 sum 15.900 3.263 3.918 16.697 Atomic orbital electron populations 1.21460 0.94625 1.00969 1.01046 1.21509 0.96453 0.96897 0.98441 1.21667 0.80262 0.97997 0.99073 1.44125 1.06062 1.60892 1.05476 1.19956 0.94755 1.48720 0.83236 0.88273 1.25846 0.96012 0.96019 1.02212 1.70223 1.04201 1.46603 1.30292 0.85073 0.78265 0.77855 0.78462 1.20009 1.19912 1.20549 1.20509 0.89665 0.82958 0.83742 1.90482 1.76059 1.59058 1.26938 1.21267 0.91998 0.98020 1.00007 0.90574 1.21284 0.95525 1.02281 0.93915 1.21946 0.94211 0.96718 1.03432 1.22786 0.98541 0.98016 0.84688 1.48104 1.07086 1.65837 1.11516 1.18856 0.88053 0.76858 0.82425 1.90813 1.69051 1.50265 1.35203 1.20243 0.91721 1.01201 0.96992 1.22765 0.96325 0.99068 0.98157 1.23382 0.91081 0.94304 0.96543 1.67658 1.42040 1.09123 1.01099 1.23101 0.90603 0.94563 0.97091 1.22344 0.96219 0.99354 0.97895 1.21329 0.79852 0.95202 1.02694 0.93558 0.92548 0.92631 0.91899 0.97295 0.96324 0.87260 0.92082 0.91547 0.92534 0.91993 0.86798 0.85727 0.88364 0.80909 0.78377 0.79676 0.84719 0.90291 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.74 9.91 71.98 0.71 -4.03 16 2 C -0.09 -4.45 5.43 30.60 0.17 -4.28 16 3 C 0.13 6.72 4.68 86.38 0.40 7.13 16 4 N -0.45 -23.17 2.63 -635.54 -1.67 -24.84 16 5 C -0.34 -17.42 8.51 84.04 0.71 -16.71 16 6 H 0.10 5.06 5.00 -2.91 -0.01 5.04 16 7 C 0.00 0.05 5.24 84.93 0.45 0.50 16 8 N -0.87 -43.61 7.48 21.66 0.16 -43.45 16 9 Si 0.98 41.73 29.55 68.60 2.03 43.76 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 12 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 13 C 0.44 21.59 6.90 87.66 0.60 22.19 16 14 O -0.64 -33.82 15.57 -3.07 -0.05 -33.87 16 15 C -0.09 -3.53 1.82 -11.46 -0.02 -3.55 16 16 H 0.08 3.13 7.25 -2.38 -0.02 3.11 16 17 C -0.09 -2.82 4.50 30.62 0.14 -2.68 16 18 C -0.13 -2.55 6.08 30.67 0.19 -2.36 16 19 C 0.08 1.48 5.18 86.36 0.45 1.93 16 20 N -0.59 -17.21 2.97 -821.99 -2.44 -19.65 16 21 C 0.55 17.45 7.40 86.88 0.64 18.10 16 22 O -0.57 -24.03 16.40 -3.74 -0.06 -24.09 16 23 C -0.09 -2.11 5.36 -19.88 -0.11 -2.22 16 24 C -0.14 -2.17 7.47 22.63 0.17 -2.00 16 25 C 0.10 1.36 11.17 84.67 0.95 2.31 16 26 N -0.49 -8.63 10.34 -196.01 -2.03 -10.65 16 27 C 0.10 1.79 11.17 84.67 0.95 2.74 16 28 C -0.14 -3.03 9.78 22.63 0.22 -2.80 16 29 C 0.13 4.91 5.39 86.36 0.47 5.37 16 30 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.06 3.21 6.34 -2.39 -0.02 3.19 16 34 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.02 0.96 7.37 -2.39 -0.02 0.94 16 36 H 0.11 5.78 5.70 -2.39 -0.01 5.76 16 37 H 0.27 12.70 8.31 -92.70 -0.77 11.93 16 38 H 0.07 2.08 8.03 -2.39 -0.02 2.06 16 39 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.13 1.66 3.88 -2.39 -0.01 1.65 16 43 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.17 1.70 6.17 -2.91 -0.02 1.68 16 45 H 0.20 1.07 8.06 -2.91 -0.02 1.04 16 46 H 0.19 2.17 8.06 -2.91 -0.02 2.14 16 47 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 48 H 0.08 3.52 5.08 -2.39 -0.01 3.51 16 49 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -70.42 382.82 3.99 -66.43 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.97 Total: 26.74 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: 7.08 Total: 19.62 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -5.98 Total: -98.59 kcal Atomic # 8 Polarization: -57.85 SS G_CDS: -0.11 Total: -57.96 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -70.42 3.99 -66.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172863201.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.196 kcal (2) G-P(sol) polarization free energy of solvation -70.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds