Wall clock time and date at job start Wed Apr 1 2020 02:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46869 * 2 1 4 4 H 1.09002 * 109.47272 * 305.06965 * 3 2 1 5 5 C 1.50697 * 109.47048 * 185.07331 * 3 2 1 6 6 H 1.08002 * 120.00634 * 267.02322 * 5 3 2 7 7 C 1.37882 * 120.00025 * 87.02549 * 5 3 2 8 8 N 1.31511 * 120.00217 * 185.35732 * 7 5 3 9 9 Si 1.86799 * 119.99928 * 5.35781 * 7 5 3 10 10 H 1.48497 * 109.47331 * 93.38351 * 9 7 5 11 11 H 1.48497 * 109.47180 * 213.38386 * 9 7 5 12 12 H 1.48505 * 109.47041 * 333.38256 * 9 7 5 13 13 N 1.46498 * 109.47360 * 65.07234 * 3 2 1 14 14 C 1.34775 * 120.00365 * 275.00332 * 13 3 2 15 15 O 1.21280 * 119.99479 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00328 * 179.97438 * 14 13 3 17 17 H 1.09001 * 109.49760 * 300.06848 * 16 14 13 18 18 C 1.53035 * 109.50122 * 179.97438 * 16 14 13 19 19 C 1.53041 * 109.54045 * 178.68435 * 18 16 14 20 20 C 1.53182 * 109.31124 * 61.36651 * 19 18 16 21 21 N 1.46924 * 108.77963 * 305.36296 * 20 19 18 22 22 C 1.34767 * 120.63453 * 233.58696 * 21 20 19 23 23 O 1.21514 * 120.00076 * 181.20569 * 22 21 20 24 24 C 1.48148 * 120.00129 * 1.20861 * 22 21 20 25 25 C 1.39819 * 120.92204 * 148.46539 * 24 22 21 26 26 C 1.38158 * 118.99909 * 180.02562 * 25 24 22 27 27 N 1.31811 * 120.89775 * 0.02908 * 26 25 24 28 28 C 1.31818 * 122.04745 * 359.97438 * 27 26 25 29 29 C 1.38144 * 120.89664 * 359.97438 * 28 27 26 30 30 C 1.46934 * 118.73466 * 53.86057 * 21 20 19 31 31 H 1.09005 * 109.46777 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47031 * 299.99915 * 1 2 3 33 33 H 1.08997 * 109.47351 * 60.00134 * 1 2 3 34 34 H 1.09000 * 109.47031 * 240.00085 * 2 1 3 35 35 H 1.08997 * 109.47351 * 119.99866 * 2 1 3 36 36 H 0.96997 * 120.00333 * 180.02562 * 8 7 5 37 37 H 0.97001 * 119.99658 * 94.99462 * 13 3 2 38 38 H 1.09007 * 109.45967 * 58.66393 * 18 16 14 39 39 H 1.09003 * 109.46316 * 298.70839 * 18 16 14 40 40 H 1.08996 * 109.49605 * 301.41213 * 19 18 16 41 41 H 1.09003 * 109.49694 * 181.32217 * 19 18 16 42 42 H 1.09002 * 109.58595 * 185.57866 * 20 19 18 43 43 H 1.09003 * 109.59161 * 65.15443 * 20 19 18 44 44 H 1.07997 * 120.50244 * 0.04776 * 25 24 22 45 45 H 1.07998 * 119.54920 * 180.02562 * 26 25 24 46 46 H 1.08000 * 119.55268 * 179.97438 * 28 27 26 47 47 H 1.07998 * 120.49919 * 180.02562 * 29 28 27 48 48 H 1.08999 * 109.58556 * 65.92900 * 30 21 20 49 49 H 1.08998 * 109.58184 * 186.35273 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6043 1.9819 -0.8411 5 6 3.5417 1.4444 -0.1256 6 1 4.1578 1.4661 0.7611 7 6 4.1292 1.4185 -1.3728 8 7 5.4355 1.3138 -1.4822 9 14 3.0695 1.5322 -2.9069 10 1 2.9701 2.9503 -3.3360 11 1 3.6841 0.7281 -3.9937 12 1 1.7119 1.0083 -2.6107 13 7 1.6539 2.0970 1.2525 14 6 0.4367 2.6638 1.3694 15 8 -0.3388 2.6324 0.4375 16 6 0.0394 3.3365 2.6580 17 1 0.0724 2.6122 3.4719 18 6 -1.3799 3.8938 2.5269 19 6 -1.7966 4.5485 3.8460 20 6 -0.8479 5.7102 4.1569 21 7 0.5335 5.2099 4.1416 22 6 1.3490 5.4127 5.1952 23 8 2.4960 5.0131 5.1614 24 6 0.8470 6.1229 6.3946 25 6 1.3348 5.8152 7.6683 26 6 0.8383 6.5019 8.7595 27 7 -0.0818 7.4341 8.6112 28 6 -0.5684 7.7548 7.4289 29 6 -0.1277 7.1192 6.2843 30 6 1.0107 4.4895 2.9533 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 5.8489 1.2959 -2.3595 37 1 2.2743 2.1223 1.9977 38 1 -2.0683 3.0823 2.2908 39 1 -1.4064 4.6359 1.7289 40 1 -1.7466 3.8130 4.6488 41 1 -2.8161 4.9244 3.7594 42 1 -1.0784 6.1167 5.1417 43 1 -0.9631 6.4882 3.4021 44 1 2.0885 5.0525 7.7972 45 1 1.2090 6.2717 9.7474 46 1 -1.3219 8.5249 7.3540 47 1 -0.5305 7.3873 5.3188 48 1 1.0440 5.1699 2.1024 49 1 2.0069 4.0903 3.1437 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183862475.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:11 Heat of formation + Delta-G solvation = -21.602862 kcal Electronic energy + Delta-G solvation = -30751.511183 eV Core-core repulsion = 26679.039111 eV Total energy + Delta-G solvation = -4072.472072 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.33127 -40.00097 -39.08250 -37.35028 -35.27265 -33.88971 -32.59793 -32.44626 -31.97919 -31.66750 -30.60875 -27.55022 -26.51456 -24.92760 -24.08269 -23.50406 -22.76649 -21.74026 -20.37225 -19.77701 -19.48449 -18.14822 -17.30027 -17.09144 -16.60896 -16.20715 -15.93035 -15.58402 -15.56385 -15.24863 -14.86687 -14.54313 -14.19290 -14.11567 -14.05402 -13.86635 -13.56979 -13.41336 -13.15356 -12.83639 -12.62934 -12.36550 -12.14161 -11.91632 -11.81518 -11.54769 -11.19516 -11.09917 -10.95632 -10.78884 -10.73832 -10.65175 -10.58114 -10.24375 -9.98513 -9.83510 -9.78692 -9.53501 -9.23658 -9.17172 -8.90413 -8.69242 -8.05040 -6.22497 -4.25426 0.35649 0.62065 2.41123 2.57533 3.20041 3.25220 3.33545 3.37100 3.40666 3.88064 3.91835 3.98573 4.32284 4.33411 4.43609 4.54185 4.58088 4.62397 4.69208 4.85416 5.01880 5.04590 5.08959 5.16451 5.27446 5.29076 5.34143 5.48703 5.49036 5.56567 5.63435 5.68940 5.82296 6.03287 6.04157 6.06755 6.10874 6.16213 6.22469 6.23748 6.63605 6.75499 6.94797 6.98733 7.01547 7.27325 7.34118 7.45887 7.53750 7.78014 8.12219 8.54421 8.77453 8.92955 9.39144 10.89390 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017385 B = 0.002633 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.207856 B =10629.692198 C =11478.956014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 C 0.238 3.762 4 H 0.051 0.949 5 C -0.532 4.532 6 H 0.079 0.921 7 C 0.081 3.919 8 N -0.889 5.889 9 Si 0.869 3.131 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.255 1.255 13 N -0.700 5.700 14 C 0.507 3.493 15 O -0.548 6.548 16 C -0.123 4.123 17 H 0.095 0.905 18 C -0.099 4.099 19 C -0.135 4.135 20 C 0.070 3.930 21 N -0.599 5.599 22 C 0.556 3.444 23 O -0.521 6.521 24 C -0.078 4.078 25 C -0.119 4.119 26 C 0.099 3.901 27 N -0.473 5.473 28 C 0.096 3.904 29 C -0.161 4.161 30 C 0.121 3.879 31 H 0.029 0.971 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.267 0.733 37 H 0.394 0.606 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.111 0.889 43 H 0.078 0.922 44 H 0.147 0.853 45 H 0.164 0.836 46 H 0.163 0.837 47 H 0.158 0.842 48 H 0.079 0.921 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.201 10.950 17.340 25.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C 0.136 3.864 4 H 0.068 0.932 5 C -0.570 4.570 6 H 0.097 0.903 7 C -0.123 4.123 8 N -0.525 5.525 9 Si 0.695 3.305 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.179 1.179 13 N -0.348 5.348 14 C 0.291 3.709 15 O -0.427 6.427 16 C -0.145 4.145 17 H 0.113 0.887 18 C -0.137 4.137 19 C -0.173 4.173 20 C -0.051 4.051 21 N -0.331 5.331 22 C 0.343 3.657 23 O -0.396 6.396 24 C -0.089 4.089 25 C -0.139 4.139 26 C -0.058 4.058 27 N -0.182 5.182 28 C -0.061 4.061 29 C -0.180 4.180 30 C -0.001 4.001 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.227 0.773 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.129 0.871 43 H 0.096 0.904 44 H 0.165 0.835 45 H 0.181 0.819 46 H 0.180 0.820 47 H 0.176 0.824 48 H 0.098 0.902 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.239 11.103 17.207 25.526 hybrid contribution 0.235 -0.468 -1.349 1.447 sum -15.004 10.635 15.859 24.284 Atomic orbital electron populations 1.21893 0.97480 0.98786 1.01913 1.22115 0.93619 0.99618 1.01213 1.19180 0.95473 0.88936 0.82860 0.93163 1.21019 0.88587 1.52719 0.94689 0.90333 1.24888 0.94815 0.93723 0.98869 1.69888 1.09407 1.48667 1.24555 0.86966 0.81751 0.78825 0.82929 1.20127 1.21104 1.17851 1.46521 1.14568 1.55464 1.18208 1.20160 0.82743 0.79351 0.88601 1.90662 1.51441 1.60310 1.40331 1.21807 0.97073 0.97880 0.97749 0.88667 1.21323 0.94526 1.01114 0.96745 1.21965 0.98995 0.97793 0.98535 1.22808 0.80777 0.97357 1.04202 1.47963 1.12767 1.55877 1.16542 1.18253 0.85472 0.79643 0.82321 1.90845 1.17430 1.50356 1.81010 1.20354 0.96829 0.97303 0.94446 1.22324 0.99443 1.00463 0.91687 1.22835 0.92529 0.91308 0.99153 1.67571 1.09663 1.13951 1.27033 1.22817 0.98221 0.97831 0.87234 1.22836 0.96723 0.96704 1.01772 1.21738 0.98617 0.93163 0.86588 0.95167 0.93312 0.93070 0.92196 0.92977 0.92297 0.77266 0.90615 0.90827 0.91416 0.90139 0.87141 0.90427 0.83526 0.81899 0.82001 0.82439 0.90230 0.87804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.52 37.16 0.32 -2.49 16 2 C -0.13 -2.72 5.25 -26.73 -0.14 -2.86 16 3 C 0.24 5.51 1.77 -69.08 -0.12 5.38 16 4 H 0.05 1.27 5.03 -51.93 -0.26 1.01 16 5 C -0.53 -14.18 9.06 -34.44 -0.31 -14.50 16 6 H 0.08 2.23 8.03 -52.49 -0.42 1.81 16 7 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 8 N -0.89 -26.25 13.96 55.43 0.77 -25.47 16 9 Si 0.87 21.24 26.47 -169.99 -4.50 16.74 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.25 -6.07 6.13 56.52 0.35 -5.72 16 13 N -0.70 -13.49 4.93 -54.94 -0.27 -13.76 16 14 C 0.51 8.90 5.73 -10.99 -0.06 8.84 16 15 O -0.55 -11.24 13.12 5.56 0.07 -11.17 16 16 C -0.12 -1.58 2.69 -91.43 -0.25 -1.83 16 17 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 18 C -0.10 -1.08 4.46 -26.69 -0.12 -1.20 16 19 C -0.13 -1.02 6.08 -26.62 -0.16 -1.19 16 20 C 0.07 0.51 4.94 -3.72 -0.02 0.49 16 21 N -0.60 -6.37 2.97 -173.50 -0.51 -6.89 16 22 C 0.56 6.77 7.50 -12.20 -0.09 6.68 16 23 O -0.52 -8.38 16.24 5.35 0.09 -8.29 16 24 C -0.08 -0.74 5.56 -104.65 -0.58 -1.32 16 25 C -0.12 -1.03 9.71 -39.02 -0.38 -1.41 16 26 C 0.10 0.75 11.17 -17.59 -0.20 0.56 16 27 N -0.47 -4.04 10.34 -13.30 -0.14 -4.18 16 28 C 0.10 0.64 11.17 -17.59 -0.20 0.44 16 29 C -0.16 -1.10 7.58 -39.02 -0.30 -1.40 16 30 C 0.12 1.54 5.60 -3.48 -0.02 1.52 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.93 5.64 -51.93 -0.29 0.64 16 33 H 0.05 1.07 7.85 -51.93 -0.41 0.66 16 34 H 0.06 1.34 7.19 -51.93 -0.37 0.97 16 35 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 37 H 0.39 7.00 8.14 -40.82 -0.33 6.67 16 38 H 0.08 0.90 8.07 -51.92 -0.42 0.48 16 39 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.11 0.62 3.52 -52.77 -0.19 0.43 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.15 1.22 8.01 -52.49 -0.42 0.80 16 45 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 46 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16 47 H 0.16 0.74 5.34 -52.49 -0.28 0.46 16 48 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.10 1.50 6.63 -51.93 -0.34 1.16 16 LS Contribution 383.62 15.07 5.78 5.78 Total: -1.00 -33.87 383.62 -8.59 -42.46 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -7.16 Total: 6.90 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -2.72 Total: -2.12 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.15 Total: -50.30 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: 0.16 Total: -19.45 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.50 Total: 16.74 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.87 -8.59 -42.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183862475.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.858 kcal (2) G-P(sol) polarization free energy of solvation -33.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds