Wall clock time and date at job start Wed Apr 1 2020 02:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46869 * 2 1 4 4 H 1.09002 * 109.47272 * 305.06965 * 3 2 1 5 5 C 1.50697 * 109.47048 * 185.07331 * 3 2 1 6 6 H 1.08002 * 120.00634 * 267.02322 * 5 3 2 7 7 C 1.37882 * 120.00025 * 87.02549 * 5 3 2 8 8 N 1.31511 * 120.00217 * 185.35732 * 7 5 3 9 9 Si 1.86799 * 119.99928 * 5.35781 * 7 5 3 10 10 H 1.48497 * 109.47331 * 93.38351 * 9 7 5 11 11 H 1.48497 * 109.47180 * 213.38386 * 9 7 5 12 12 H 1.48505 * 109.47041 * 333.38256 * 9 7 5 13 13 N 1.46498 * 109.47360 * 65.07234 * 3 2 1 14 14 C 1.34775 * 120.00365 * 275.00332 * 13 3 2 15 15 O 1.21280 * 119.99479 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00328 * 179.97438 * 14 13 3 17 17 H 1.09001 * 109.49760 * 300.06848 * 16 14 13 18 18 C 1.53035 * 109.50122 * 179.97438 * 16 14 13 19 19 C 1.53041 * 109.54045 * 178.68435 * 18 16 14 20 20 C 1.53182 * 109.31124 * 61.36651 * 19 18 16 21 21 N 1.46924 * 108.77963 * 305.36296 * 20 19 18 22 22 C 1.34767 * 120.63453 * 233.58696 * 21 20 19 23 23 O 1.21514 * 120.00076 * 181.20569 * 22 21 20 24 24 C 1.48148 * 120.00129 * 1.20861 * 22 21 20 25 25 C 1.39819 * 120.92204 * 148.46539 * 24 22 21 26 26 C 1.38158 * 118.99909 * 180.02562 * 25 24 22 27 27 N 1.31811 * 120.89775 * 0.02908 * 26 25 24 28 28 C 1.31818 * 122.04745 * 359.97438 * 27 26 25 29 29 C 1.38144 * 120.89664 * 359.97438 * 28 27 26 30 30 C 1.46934 * 118.73466 * 53.86057 * 21 20 19 31 31 H 1.09005 * 109.46777 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47031 * 299.99915 * 1 2 3 33 33 H 1.08997 * 109.47351 * 60.00134 * 1 2 3 34 34 H 1.09000 * 109.47031 * 240.00085 * 2 1 3 35 35 H 1.08997 * 109.47351 * 119.99866 * 2 1 3 36 36 H 0.96997 * 120.00333 * 180.02562 * 8 7 5 37 37 H 0.97001 * 119.99658 * 94.99462 * 13 3 2 38 38 H 1.09007 * 109.45967 * 58.66393 * 18 16 14 39 39 H 1.09003 * 109.46316 * 298.70839 * 18 16 14 40 40 H 1.08996 * 109.49605 * 301.41213 * 19 18 16 41 41 H 1.09003 * 109.49694 * 181.32217 * 19 18 16 42 42 H 1.09002 * 109.58595 * 185.57866 * 20 19 18 43 43 H 1.09003 * 109.59161 * 65.15443 * 20 19 18 44 44 H 1.07997 * 120.50244 * 0.04776 * 25 24 22 45 45 H 1.07998 * 119.54920 * 180.02562 * 26 25 24 46 46 H 1.08000 * 119.55268 * 179.97438 * 28 27 26 47 47 H 1.07998 * 120.49919 * 180.02562 * 29 28 27 48 48 H 1.08999 * 109.58556 * 65.92900 * 30 21 20 49 49 H 1.08998 * 109.58184 * 186.35273 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6043 1.9819 -0.8411 5 6 3.5417 1.4444 -0.1256 6 1 4.1578 1.4661 0.7611 7 6 4.1292 1.4185 -1.3728 8 7 5.4355 1.3138 -1.4822 9 14 3.0695 1.5322 -2.9069 10 1 2.9701 2.9503 -3.3360 11 1 3.6841 0.7281 -3.9937 12 1 1.7119 1.0083 -2.6107 13 7 1.6539 2.0970 1.2525 14 6 0.4367 2.6638 1.3694 15 8 -0.3388 2.6324 0.4375 16 6 0.0394 3.3365 2.6580 17 1 0.0724 2.6122 3.4719 18 6 -1.3799 3.8938 2.5269 19 6 -1.7966 4.5485 3.8460 20 6 -0.8479 5.7102 4.1569 21 7 0.5335 5.2099 4.1416 22 6 1.3490 5.4127 5.1952 23 8 2.4960 5.0131 5.1614 24 6 0.8470 6.1229 6.3946 25 6 1.3348 5.8152 7.6683 26 6 0.8383 6.5019 8.7595 27 7 -0.0818 7.4341 8.6112 28 6 -0.5684 7.7548 7.4289 29 6 -0.1277 7.1192 6.2843 30 6 1.0107 4.4895 2.9533 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 5.8489 1.2959 -2.3595 37 1 2.2743 2.1223 1.9977 38 1 -2.0683 3.0823 2.2908 39 1 -1.4064 4.6359 1.7289 40 1 -1.7466 3.8130 4.6488 41 1 -2.8161 4.9244 3.7594 42 1 -1.0784 6.1167 5.1417 43 1 -0.9631 6.4882 3.4021 44 1 2.0885 5.0525 7.7972 45 1 1.2090 6.2717 9.7474 46 1 -1.3219 8.5249 7.3540 47 1 -0.5305 7.3873 5.3188 48 1 1.0440 5.1699 2.1024 49 1 2.0069 4.0903 3.1437 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183862475.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:10 Heat of formation + Delta-G solvation = -45.016437 kcal Electronic energy + Delta-G solvation = -30752.526472 eV Core-core repulsion = 26679.039111 eV Total energy + Delta-G solvation = -4073.487361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.12690 -41.09802 -40.13989 -38.39449 -36.96521 -34.79806 -34.40943 -33.36011 -33.32386 -32.42748 -31.66444 -29.41781 -27.35258 -25.90304 -24.78445 -24.64885 -24.14093 -22.76351 -21.66035 -21.20631 -20.61307 -19.32644 -18.73428 -17.86290 -17.67566 -17.33145 -17.19378 -16.93214 -16.49797 -16.20791 -15.91697 -15.79487 -15.43052 -14.98182 -14.91067 -14.82071 -14.77780 -14.66556 -14.35092 -14.08130 -13.82896 -13.76186 -13.72795 -13.39985 -12.93227 -12.76489 -12.65263 -12.47178 -12.38626 -12.00969 -11.86021 -11.81748 -11.69789 -11.67933 -11.46795 -11.22359 -10.90961 -10.83947 -10.67341 -10.40652 -10.06902 -9.86431 -9.71365 -8.39448 -6.45265 -0.30883 0.07943 1.27641 1.32612 1.44401 1.47769 1.69941 1.86346 2.26411 2.47179 2.77853 2.99940 3.17280 3.52430 3.66347 3.68332 3.78295 3.84467 3.89126 3.97268 4.08281 4.11403 4.22193 4.30594 4.40417 4.43771 4.50675 4.53555 4.54711 4.67319 4.72601 4.75691 4.81464 4.82850 4.87669 4.98190 5.07384 5.08551 5.17685 5.23110 5.25804 5.32245 5.38651 5.40841 5.54476 5.61017 5.73828 6.11715 6.17490 6.59066 6.87261 6.88444 6.91536 7.19436 7.43424 8.76101 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017385 B = 0.002633 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.207856 B =10629.692198 C =11478.956014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.125 4.125 3 C 0.244 3.756 4 H 0.033 0.967 5 C -0.529 4.529 6 H 0.049 0.951 7 C 0.030 3.970 8 N -0.934 5.934 9 Si 0.926 3.074 10 H -0.275 1.275 11 H -0.278 1.278 12 H -0.246 1.246 13 N -0.705 5.705 14 C 0.508 3.492 15 O -0.574 6.574 16 C -0.108 4.108 17 H 0.105 0.895 18 C -0.096 4.096 19 C -0.125 4.125 20 C 0.064 3.936 21 N -0.593 5.593 22 C 0.552 3.448 23 O -0.573 6.573 24 C -0.095 4.095 25 C -0.131 4.131 26 C 0.099 3.901 27 N -0.491 5.491 28 C 0.100 3.900 29 C -0.151 4.151 30 C 0.125 3.875 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.036 0.964 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.270 0.730 37 H 0.400 0.600 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.111 0.889 42 H 0.134 0.866 43 H 0.098 0.902 44 H 0.140 0.860 45 H 0.185 0.815 46 H 0.197 0.803 47 H 0.184 0.816 48 H 0.076 0.924 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.733 12.391 18.450 29.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.164 4.164 3 C 0.140 3.860 4 H 0.051 0.949 5 C -0.568 4.568 6 H 0.067 0.933 7 C -0.170 4.170 8 N -0.572 5.572 9 Si 0.750 3.250 10 H -0.201 1.201 11 H -0.203 1.203 12 H -0.169 1.169 13 N -0.353 5.353 14 C 0.295 3.705 15 O -0.454 6.454 16 C -0.130 4.130 17 H 0.123 0.877 18 C -0.134 4.134 19 C -0.163 4.163 20 C -0.056 4.056 21 N -0.324 5.324 22 C 0.342 3.658 23 O -0.453 6.453 24 C -0.106 4.106 25 C -0.152 4.152 26 C -0.057 4.057 27 N -0.201 5.201 28 C -0.057 4.057 29 C -0.170 4.170 30 C 0.002 3.998 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.234 0.766 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.130 0.870 42 H 0.151 0.849 43 H 0.116 0.884 44 H 0.158 0.842 45 H 0.202 0.798 46 H 0.214 0.786 47 H 0.201 0.799 48 H 0.094 0.906 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.822 12.557 18.345 29.129 hybrid contribution 1.327 -0.876 -1.610 2.263 sum -17.495 11.682 16.735 26.881 Atomic orbital electron populations 1.21755 0.95509 1.00324 1.01284 1.22025 0.95287 0.98101 1.01017 1.18887 0.92923 0.90177 0.83995 0.94940 1.21239 0.90473 1.51446 0.93610 0.93280 1.25621 0.95758 0.93748 1.01866 1.70002 1.11107 1.50754 1.25381 0.86054 0.80532 0.78795 0.79588 1.20058 1.20342 1.16937 1.46365 1.15756 1.55994 1.17187 1.20867 0.81451 0.78362 0.89870 1.90646 1.51951 1.61044 1.41767 1.21732 0.98507 0.97739 0.95053 0.87664 1.21338 0.92498 1.00878 0.98728 1.21945 1.00520 0.97622 0.96232 1.23170 0.78363 0.97770 1.06254 1.48016 1.14083 1.55032 1.15285 1.18738 0.84893 0.79100 0.83114 1.90816 1.19728 1.52711 1.82024 1.20253 0.98453 0.98593 0.93288 1.22386 0.99784 1.00957 0.92090 1.23138 0.92141 0.90755 0.99704 1.67648 1.10057 1.14252 1.28144 1.23400 0.98098 0.97791 0.86396 1.23058 0.95478 0.95357 1.03144 1.21500 0.97587 0.93254 0.87504 0.92516 0.93089 0.94475 0.93231 0.92386 0.92112 0.76585 0.91312 0.91452 0.91337 0.87041 0.84862 0.88424 0.84193 0.79814 0.78632 0.79915 0.90586 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.94 8.52 71.98 0.61 -4.33 16 2 C -0.13 -5.34 5.25 30.59 0.16 -5.18 16 3 C 0.24 11.43 1.77 44.25 0.08 11.51 16 4 H 0.03 1.65 5.03 -2.39 -0.01 1.64 16 5 C -0.53 -29.13 9.06 25.60 0.23 -28.90 16 6 H 0.05 2.93 8.03 -2.91 -0.02 2.90 16 7 C 0.03 1.71 5.47 84.66 0.46 2.17 16 8 N -0.93 -56.83 13.96 21.45 0.30 -56.53 16 9 Si 0.93 44.47 26.47 68.60 1.82 46.28 16 10 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.25 -11.35 6.13 99.48 0.61 -10.74 16 13 N -0.70 -27.61 4.93 -446.11 -2.20 -29.80 16 14 C 0.51 17.69 5.73 87.66 0.50 18.20 16 15 O -0.57 -23.16 13.12 -3.03 -0.04 -23.20 16 16 C -0.11 -2.70 2.69 -11.32 -0.03 -2.73 16 17 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 18 C -0.10 -1.89 4.46 30.62 0.14 -1.75 16 19 C -0.13 -1.44 6.08 30.67 0.19 -1.25 16 20 C 0.06 0.70 4.94 86.36 0.43 1.13 16 21 N -0.59 -11.85 2.97 -821.14 -2.44 -14.28 16 22 C 0.55 13.32 7.50 86.88 0.65 13.97 16 23 O -0.57 -19.31 16.24 -3.76 -0.06 -19.37 16 24 C -0.09 -1.67 5.56 -19.88 -0.11 -1.78 16 25 C -0.13 -2.22 9.71 22.63 0.22 -2.00 16 26 C 0.10 1.35 11.17 84.68 0.95 2.30 16 27 N -0.49 -7.10 10.34 -196.00 -2.03 -9.12 16 28 C 0.10 0.97 11.17 84.67 0.95 1.92 16 29 C -0.15 -1.58 7.58 22.63 0.17 -1.41 16 30 C 0.12 3.17 5.60 86.51 0.48 3.65 16 31 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.05 1.87 5.64 -2.39 -0.01 1.86 16 33 H 0.04 1.49 7.85 -2.39 -0.02 1.47 16 34 H 0.05 2.19 7.19 -2.39 -0.02 2.17 16 35 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 37 H 0.40 14.75 8.14 -92.71 -0.75 14.00 16 38 H 0.07 1.47 8.07 -2.38 -0.02 1.45 16 39 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16 40 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.13 0.90 3.52 -3.18 -0.01 0.89 16 43 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.14 2.44 8.01 -2.91 -0.02 2.42 16 45 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 46 H 0.20 0.48 8.06 -2.91 -0.02 0.46 16 47 H 0.18 0.90 5.34 -2.91 -0.02 0.88 16 48 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.08 2.43 6.63 -2.39 -0.02 2.42 16 Total: -1.00 -76.54 383.62 1.56 -74.98 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.13 Total: 25.52 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 6.08 Total: 5.52 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -6.36 Total: -109.74 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -0.10 Total: -42.56 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.82 Total: 46.28 kcal Total: -76.54 1.56 -74.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183862475.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.967 kcal (2) G-P(sol) polarization free energy of solvation -76.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds