Wall clock time and date at job start Wed Apr 1 2020 02:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47088 * 2 1 4 4 H 1.09004 * 109.47007 * 55.00522 * 3 2 1 5 5 C 1.50704 * 109.46970 * 175.00047 * 3 2 1 6 6 H 1.07997 * 119.99857 * 120.00464 * 5 3 2 7 7 C 1.37877 * 120.00127 * 300.00206 * 5 3 2 8 8 N 1.31522 * 119.99896 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00090 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47022 * 90.00093 * 9 7 5 11 11 H 1.48501 * 109.46714 * 210.00022 * 9 7 5 12 12 H 1.48498 * 109.47024 * 329.99875 * 9 7 5 13 13 N 1.46501 * 109.47656 * 294.99896 * 3 2 1 14 14 C 1.34783 * 119.99549 * 84.99713 * 13 3 2 15 15 O 1.21282 * 120.00080 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99450 * 180.02562 * 14 13 3 17 17 H 1.08998 * 109.49652 * 59.94488 * 16 14 13 18 18 C 1.53042 * 109.49229 * 180.02562 * 16 14 13 19 19 C 1.53035 * 109.53626 * 181.32044 * 18 16 14 20 20 C 1.53200 * 109.31212 * 298.63159 * 19 18 16 21 21 N 1.46925 * 108.88992 * 54.56263 * 20 19 18 22 22 C 1.34784 * 120.62646 * 126.46227 * 21 20 19 23 23 O 1.21516 * 119.99652 * 176.18341 * 22 21 20 24 24 C 1.48145 * 120.00157 * 356.17542 * 22 21 20 25 25 C 1.39820 * 120.92084 * 49.94281 * 24 22 21 26 26 C 1.38145 * 119.00137 * 179.75133 * 25 24 22 27 27 N 1.31813 * 120.89884 * 0.53699 * 26 25 24 28 28 C 1.31809 * 122.04437 * 359.73245 * 27 26 25 29 29 C 1.38150 * 120.90087 * 359.97438 * 28 27 26 30 30 C 1.46962 * 118.71805 * 306.64408 * 21 20 19 31 31 H 1.09002 * 109.47082 * 300.00165 * 1 2 3 32 32 H 1.08996 * 109.46839 * 59.99549 * 1 2 3 33 33 H 1.09000 * 109.47320 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.46817 * 240.00227 * 2 1 3 35 35 H 1.08996 * 109.46839 * 120.00451 * 2 1 3 36 36 H 0.96997 * 119.99714 * 179.97438 * 8 7 5 37 37 H 0.96995 * 120.00223 * 265.00204 * 13 3 2 38 38 H 1.09001 * 109.46335 * 61.29465 * 18 16 14 39 39 H 1.09004 * 109.44822 * 301.33217 * 18 16 14 40 40 H 1.09000 * 109.50282 * 178.68283 * 19 18 16 41 41 H 1.09003 * 109.50408 * 58.58253 * 19 18 16 42 42 H 1.08994 * 109.58709 * 174.42419 * 20 19 18 43 43 H 1.08996 * 109.58796 * 294.70650 * 20 19 18 44 44 H 1.08003 * 120.49842 * 359.97438 * 25 24 22 45 45 H 1.08005 * 119.55250 * 180.27047 * 26 25 24 46 46 H 1.08001 * 119.55421 * 179.97438 * 28 27 26 47 47 H 1.08004 * 120.50308 * 180.02562 * 29 28 27 48 48 H 1.08995 * 109.46605 * 293.57281 * 30 21 20 49 49 H 1.08996 * 109.70848 * 173.28322 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8811 1.3817 10 1 6.4417 2.1140 2.0850 11 1 6.4395 -0.3100 2.1548 12 1 6.6136 0.8415 0.0278 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6326 -0.4340 16 6 0.0363 3.3378 -2.6548 17 1 0.0682 2.6138 -3.4689 18 6 -1.3828 3.8951 -2.5215 19 6 -1.8011 4.5503 -3.8397 20 6 -0.8527 5.7123 -4.1514 21 7 0.5297 5.2149 -4.1369 22 6 1.3444 5.4202 -5.1909 23 8 2.5055 5.0653 -5.1395 24 6 0.8243 6.0782 -6.4121 25 6 0.1120 7.2788 -6.3334 26 6 -0.3505 7.8607 -7.4978 27 7 -0.1373 7.2941 -8.6687 28 6 0.5244 6.1603 -8.7868 29 6 1.0273 5.5131 -7.6747 30 6 1.0056 4.4860 -2.9529 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 3.8293 -0.0612 2.9499 37 1 2.2720 2.1232 -1.9977 38 1 -1.4082 4.6368 -1.7232 39 1 -2.0708 3.0833 -2.2850 40 1 -2.8205 4.9263 -3.7518 41 1 -1.7521 3.8152 -4.6431 42 1 -1.0844 6.1192 -5.1356 43 1 -0.9687 6.4910 -3.3976 44 1 -0.0707 7.7460 -5.3769 45 1 -0.8980 8.7904 -7.4477 46 1 0.6755 5.7313 -9.7664 47 1 1.5688 4.5845 -7.7790 48 1 1.0428 5.1635 -2.0999 49 1 2.0005 4.0839 -3.1440 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183862492.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:17 Heat of formation + Delta-G solvation = -39.114176 kcal Electronic energy + Delta-G solvation = -30645.175049 eV Core-core repulsion = 26571.943630 eV Total energy + Delta-G solvation = -4073.231419 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.22315 -39.97099 -39.00148 -37.26010 -35.10813 -33.71382 -32.58443 -32.47155 -31.78822 -31.50410 -30.43256 -27.03383 -26.41391 -24.73946 -24.06646 -23.61167 -22.95885 -21.64251 -20.23277 -19.65633 -19.27193 -18.13367 -17.07525 -17.00015 -16.52691 -16.23404 -15.73119 -15.57291 -15.42266 -15.10186 -14.80691 -14.43587 -14.23201 -14.18088 -14.09885 -13.79123 -13.47361 -13.42118 -13.11650 -12.68964 -12.58563 -12.17014 -12.10330 -11.59276 -11.41234 -11.32761 -11.17480 -11.06375 -10.96549 -10.83964 -10.75228 -10.62298 -10.32131 -10.22206 -10.16815 -9.79692 -9.64149 -9.59703 -9.10295 -9.05733 -8.86018 -8.49760 -7.84682 -6.12629 -4.21780 0.44129 0.62909 2.29915 2.57560 3.25153 3.31950 3.33165 3.33954 3.35616 3.90357 3.98583 4.01267 4.35302 4.38273 4.47394 4.59353 4.61354 4.65786 4.70037 4.91390 5.05171 5.06301 5.18617 5.19530 5.28776 5.30048 5.36669 5.51906 5.54617 5.60669 5.66508 5.71297 5.85929 6.10121 6.12108 6.17777 6.27665 6.37126 6.43292 6.63794 7.01164 7.01944 7.17239 7.34744 7.42883 7.46554 7.61228 7.72100 7.76002 7.88992 8.17262 8.64502 8.77113 9.09790 9.45650 10.92645 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015259 B = 0.002613 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.602099 B =10714.966752 C =11951.997904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.706 5.706 14 C 0.507 3.493 15 O -0.544 6.544 16 C -0.124 4.124 17 H 0.093 0.907 18 C -0.099 4.099 19 C -0.135 4.135 20 C 0.093 3.907 21 N -0.599 5.599 22 C 0.557 3.443 23 O -0.521 6.521 24 C -0.073 4.073 25 C -0.148 4.148 26 C 0.098 3.902 27 N -0.475 5.475 28 C 0.101 3.899 29 C -0.126 4.126 30 C 0.122 3.878 31 H 0.049 0.951 32 H 0.037 0.963 33 H 0.022 0.978 34 H 0.030 0.970 35 H 0.099 0.901 36 H 0.264 0.736 37 H 0.388 0.612 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.144 0.856 45 H 0.163 0.837 46 H 0.163 0.837 47 H 0.144 0.856 48 H 0.079 0.921 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.570 12.253 -18.430 24.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.354 5.354 14 C 0.291 3.709 15 O -0.423 6.423 16 C -0.146 4.146 17 H 0.111 0.889 18 C -0.137 4.137 19 C -0.173 4.173 20 C -0.029 4.029 21 N -0.332 5.332 22 C 0.344 3.656 23 O -0.397 6.397 24 C -0.085 4.085 25 C -0.168 4.168 26 C -0.058 4.058 27 N -0.184 5.184 28 C -0.056 4.056 29 C -0.146 4.146 30 C 0.000 4.000 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.041 0.959 34 H 0.049 0.951 35 H 0.117 0.883 36 H 0.074 0.926 37 H 0.221 0.779 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.161 0.839 45 H 0.180 0.820 46 H 0.181 0.819 47 H 0.162 0.838 48 H 0.097 0.903 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.767 12.319 -18.241 24.504 hybrid contribution 1.603 -0.520 0.574 1.780 sum -9.164 11.799 -17.667 23.137 Atomic orbital electron populations 1.21832 0.98390 0.97997 1.01134 1.21936 0.92566 0.99870 1.02300 1.18788 0.94229 0.89161 0.80960 0.93301 1.21241 0.90729 1.38953 1.06278 0.92059 1.24878 0.98579 0.94782 0.95395 1.69895 1.35113 1.37679 1.09336 0.86471 0.84921 0.77625 0.78252 1.20569 1.21090 1.19793 1.46573 1.14531 1.55647 1.18600 1.20045 0.82898 0.79528 0.88427 1.90674 1.51367 1.60134 1.40130 1.21742 0.97025 0.97793 0.98053 0.88853 1.21314 0.94601 1.01128 0.96610 1.21959 0.98985 0.97716 0.98618 1.22154 0.80502 0.97086 1.03177 1.48031 1.12897 1.55564 1.16719 1.18297 0.85696 0.79135 0.82456 1.90850 1.16463 1.50696 1.81659 1.20329 0.97627 0.96126 0.94379 1.22396 0.97711 0.95567 1.01126 1.22781 0.96824 0.99181 0.87060 1.67579 1.12788 1.10122 1.27909 1.22809 0.93075 0.90853 0.98856 1.22253 0.99150 1.01553 0.91655 1.21631 0.98530 0.93163 0.86654 0.93155 0.94391 0.95898 0.95067 0.88273 0.92589 0.77909 0.90796 0.90546 0.90148 0.91462 0.89101 0.90550 0.83872 0.82024 0.81934 0.83825 0.90295 0.88040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.52 37.16 0.32 -2.67 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.67 2.24 -69.08 -0.15 6.52 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.01 8.73 -34.44 -0.30 -14.31 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.61 11.30 55.43 0.63 -23.98 16 9 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 13 N -0.71 -14.17 4.93 -54.93 -0.27 -14.44 16 14 C 0.51 9.34 5.72 -10.98 -0.06 9.28 16 15 O -0.54 -11.82 13.12 5.56 0.07 -11.75 16 16 C -0.12 -1.66 2.68 -91.65 -0.25 -1.91 16 17 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 18 C -0.10 -1.14 4.46 -26.69 -0.12 -1.26 16 19 C -0.13 -1.09 6.08 -26.61 -0.16 -1.25 16 20 C 0.09 0.72 5.41 -3.71 -0.02 0.70 16 21 N -0.60 -6.45 2.98 -173.75 -0.52 -6.97 16 22 C 0.56 6.77 7.30 -12.19 -0.09 6.68 16 23 O -0.52 -8.37 16.49 5.35 0.09 -8.29 16 24 C -0.07 -0.69 5.05 -104.65 -0.53 -1.22 16 25 C -0.15 -1.05 7.48 -39.02 -0.29 -1.35 16 26 C 0.10 0.67 11.17 -17.59 -0.20 0.48 16 27 N -0.47 -4.07 10.34 -13.30 -0.14 -4.21 16 28 C 0.10 0.77 11.17 -17.59 -0.20 0.57 16 29 C -0.13 -1.07 9.86 -39.02 -0.38 -1.46 16 30 C 0.12 1.57 5.55 -3.69 -0.02 1.55 16 31 H 0.05 1.17 7.85 -51.93 -0.41 0.77 16 32 H 0.04 0.80 5.64 -51.93 -0.29 0.50 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 36 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.39 7.05 8.08 -40.82 -0.33 6.72 16 38 H 0.07 0.91 8.13 -51.93 -0.42 0.48 16 39 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 0.57 4.51 -51.93 -0.23 0.33 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.14 0.75 7.07 -52.48 -0.37 0.38 16 45 H 0.16 0.64 8.06 -52.48 -0.42 0.22 16 46 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 47 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 48 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 49 H 0.10 1.46 6.64 -51.93 -0.34 1.11 16 LS Contribution 388.91 15.07 5.86 5.86 Total: -1.00 -32.63 388.91 -9.29 -41.91 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -7.29 Total: 7.32 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -2.70 Total: -1.19 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.30 Total: -49.59 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: 0.16 Total: -20.04 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.63 -9.29 -41.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183862492.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.800 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds