Wall clock time and date at job start Wed Apr 1 2020 02:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47088 * 2 1 4 4 H 1.09004 * 109.47007 * 55.00522 * 3 2 1 5 5 C 1.50704 * 109.46970 * 175.00047 * 3 2 1 6 6 H 1.07997 * 119.99857 * 120.00464 * 5 3 2 7 7 C 1.37877 * 120.00127 * 300.00206 * 5 3 2 8 8 N 1.31522 * 119.99896 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00090 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47022 * 90.00093 * 9 7 5 11 11 H 1.48501 * 109.46714 * 210.00022 * 9 7 5 12 12 H 1.48498 * 109.47024 * 329.99875 * 9 7 5 13 13 N 1.46501 * 109.47656 * 294.99896 * 3 2 1 14 14 C 1.34783 * 119.99549 * 84.99713 * 13 3 2 15 15 O 1.21282 * 120.00080 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99450 * 180.02562 * 14 13 3 17 17 H 1.08998 * 109.49652 * 59.94488 * 16 14 13 18 18 C 1.53042 * 109.49229 * 180.02562 * 16 14 13 19 19 C 1.53035 * 109.53626 * 181.32044 * 18 16 14 20 20 C 1.53200 * 109.31212 * 298.63159 * 19 18 16 21 21 N 1.46925 * 108.88992 * 54.56263 * 20 19 18 22 22 C 1.34784 * 120.62646 * 126.46227 * 21 20 19 23 23 O 1.21516 * 119.99652 * 176.18341 * 22 21 20 24 24 C 1.48145 * 120.00157 * 356.17542 * 22 21 20 25 25 C 1.39820 * 120.92084 * 49.94281 * 24 22 21 26 26 C 1.38145 * 119.00137 * 179.75133 * 25 24 22 27 27 N 1.31813 * 120.89884 * 0.53699 * 26 25 24 28 28 C 1.31809 * 122.04437 * 359.73245 * 27 26 25 29 29 C 1.38150 * 120.90087 * 359.97438 * 28 27 26 30 30 C 1.46962 * 118.71805 * 306.64408 * 21 20 19 31 31 H 1.09002 * 109.47082 * 300.00165 * 1 2 3 32 32 H 1.08996 * 109.46839 * 59.99549 * 1 2 3 33 33 H 1.09000 * 109.47320 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.46817 * 240.00227 * 2 1 3 35 35 H 1.08996 * 109.46839 * 120.00451 * 2 1 3 36 36 H 0.96997 * 119.99714 * 179.97438 * 8 7 5 37 37 H 0.96995 * 120.00223 * 265.00204 * 13 3 2 38 38 H 1.09001 * 109.46335 * 61.29465 * 18 16 14 39 39 H 1.09004 * 109.44822 * 301.33217 * 18 16 14 40 40 H 1.09000 * 109.50282 * 178.68283 * 19 18 16 41 41 H 1.09003 * 109.50408 * 58.58253 * 19 18 16 42 42 H 1.08994 * 109.58709 * 174.42419 * 20 19 18 43 43 H 1.08996 * 109.58796 * 294.70650 * 20 19 18 44 44 H 1.08003 * 120.49842 * 359.97438 * 25 24 22 45 45 H 1.08005 * 119.55250 * 180.27047 * 26 25 24 46 46 H 1.08001 * 119.55421 * 179.97438 * 28 27 26 47 47 H 1.08004 * 120.50308 * 180.02562 * 29 28 27 48 48 H 1.08995 * 109.46605 * 293.57281 * 30 21 20 49 49 H 1.08996 * 109.70848 * 173.28322 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8811 1.3817 10 1 6.4417 2.1140 2.0850 11 1 6.4395 -0.3100 2.1548 12 1 6.6136 0.8415 0.0278 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6326 -0.4340 16 6 0.0363 3.3378 -2.6548 17 1 0.0682 2.6138 -3.4689 18 6 -1.3828 3.8951 -2.5215 19 6 -1.8011 4.5503 -3.8397 20 6 -0.8527 5.7123 -4.1514 21 7 0.5297 5.2149 -4.1369 22 6 1.3444 5.4202 -5.1909 23 8 2.5055 5.0653 -5.1395 24 6 0.8243 6.0782 -6.4121 25 6 0.1120 7.2788 -6.3334 26 6 -0.3505 7.8607 -7.4978 27 7 -0.1373 7.2941 -8.6687 28 6 0.5244 6.1603 -8.7868 29 6 1.0273 5.5131 -7.6747 30 6 1.0056 4.4860 -2.9529 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 3.8293 -0.0612 2.9499 37 1 2.2720 2.1232 -1.9977 38 1 -1.4082 4.6368 -1.7232 39 1 -2.0708 3.0833 -2.2850 40 1 -2.8205 4.9263 -3.7518 41 1 -1.7521 3.8152 -4.6431 42 1 -1.0844 6.1192 -5.1356 43 1 -0.9687 6.4910 -3.3976 44 1 -0.0707 7.7460 -5.3769 45 1 -0.8980 8.7904 -7.4477 46 1 0.6755 5.7313 -9.7664 47 1 1.5688 4.5845 -7.7790 48 1 1.0428 5.1635 -2.0999 49 1 2.0005 4.0839 -3.1440 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183862492.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:17 Heat of formation + Delta-G solvation = -60.382357 kcal Electronic energy + Delta-G solvation = -30646.097307 eV Core-core repulsion = 26571.943630 eV Total energy + Delta-G solvation = -4074.153677 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.03554 -41.05203 -40.13434 -38.34745 -36.91128 -34.65838 -34.30500 -33.32974 -33.06962 -32.31349 -31.75347 -28.95042 -27.26821 -25.85150 -24.84688 -24.73735 -24.24403 -22.72316 -21.66260 -21.05989 -20.51489 -19.18968 -18.53661 -17.80805 -17.37142 -17.25451 -17.18294 -16.97579 -16.49134 -16.24164 -15.95891 -15.68036 -15.42212 -14.98317 -14.84068 -14.79927 -14.63729 -14.63044 -14.33341 -14.07300 -13.74396 -13.70462 -13.33069 -13.18113 -12.91235 -12.72749 -12.70793 -12.50724 -12.20561 -12.15543 -12.01546 -11.93725 -11.70596 -11.59386 -11.49403 -11.07076 -10.87028 -10.67605 -10.52365 -10.41512 -10.12646 -9.87086 -9.63232 -8.18211 -6.34864 -0.20584 0.09617 1.38299 1.41854 1.42635 1.52987 1.67008 1.89894 2.34185 2.63058 2.76709 3.11071 3.16913 3.53536 3.66620 3.70286 3.78548 3.88300 3.92922 3.97151 4.07686 4.11813 4.25713 4.42930 4.48118 4.51293 4.54722 4.56373 4.66649 4.71335 4.76386 4.76646 4.82471 4.86829 4.99736 5.05194 5.07415 5.16579 5.24393 5.31171 5.37275 5.42837 5.54867 5.61101 5.61969 5.78228 5.90402 6.15912 6.16210 6.73135 6.85448 6.92875 6.96115 7.31823 7.54581 8.86886 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015259 B = 0.002613 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.602099 B =10714.966752 C =11951.997904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.122 4.122 3 C 0.279 3.721 4 H 0.001 0.999 5 C -0.548 4.548 6 H 0.066 0.934 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.965 3.035 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.265 1.265 13 N -0.707 5.707 14 C 0.506 3.494 15 O -0.578 6.578 16 C -0.108 4.108 17 H 0.105 0.895 18 C -0.096 4.096 19 C -0.125 4.125 20 C 0.089 3.911 21 N -0.593 5.593 22 C 0.557 3.443 23 O -0.571 6.571 24 C -0.089 4.089 25 C -0.141 4.141 26 C 0.101 3.899 27 N -0.494 5.494 28 C 0.101 3.899 29 C -0.135 4.135 30 C 0.128 3.872 31 H 0.027 0.973 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.037 0.963 35 H 0.072 0.928 36 H 0.265 0.735 37 H 0.399 0.601 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.108 0.892 41 H 0.069 0.931 42 H 0.113 0.887 43 H 0.094 0.906 44 H 0.165 0.835 45 H 0.193 0.807 46 H 0.186 0.814 47 H 0.142 0.858 48 H 0.074 0.926 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.599 13.800 -20.742 27.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.019 0.981 5 C -0.587 4.587 6 H 0.084 0.916 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.790 3.210 10 H -0.204 1.204 11 H -0.207 1.207 12 H -0.189 1.189 13 N -0.355 5.355 14 C 0.292 3.708 15 O -0.458 6.458 16 C -0.130 4.130 17 H 0.123 0.877 18 C -0.134 4.134 19 C -0.162 4.162 20 C -0.031 4.031 21 N -0.325 5.325 22 C 0.345 3.655 23 O -0.450 6.450 24 C -0.100 4.100 25 C -0.161 4.161 26 C -0.055 4.055 27 N -0.203 5.203 28 C -0.055 4.055 29 C -0.156 4.156 30 C 0.005 3.995 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.233 0.767 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.127 0.873 41 H 0.088 0.912 42 H 0.131 0.869 43 H 0.112 0.888 44 H 0.183 0.817 45 H 0.210 0.790 46 H 0.202 0.798 47 H 0.160 0.840 48 H 0.093 0.907 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.833 13.888 -20.590 27.511 hybrid contribution 1.862 -0.957 1.303 2.466 sum -9.971 12.932 -19.287 25.271 Atomic orbital electron populations 1.21662 0.96729 0.99164 1.00330 1.21786 0.93968 0.99159 1.01165 1.18352 0.93425 0.89223 0.81433 0.98064 1.21565 0.91666 1.38872 1.06556 0.91607 1.25705 1.03023 0.94404 0.95074 1.70035 1.36903 1.38336 1.09808 0.85448 0.79529 0.77540 0.78460 1.20381 1.20717 1.18891 1.46385 1.15683 1.55963 1.17476 1.20871 0.81639 0.78547 0.89758 1.90657 1.52128 1.61118 1.41916 1.21645 0.98447 0.97850 0.95055 0.87675 1.21320 0.92713 1.00752 0.98635 1.21926 1.00440 0.97641 0.96241 1.22451 0.78279 0.97319 1.05096 1.48063 1.14102 1.54745 1.15563 1.18747 0.85087 0.78451 0.83182 1.90820 1.18641 1.52956 1.82583 1.20221 0.99216 0.97358 0.93252 1.22601 0.96652 0.94425 1.02386 1.23301 0.96130 0.99799 0.86295 1.67651 1.13258 1.10510 1.28889 1.23138 0.92362 0.90548 0.99468 1.22344 0.99557 1.01886 0.91814 1.21380 0.97550 0.93048 0.87568 0.95347 0.93697 0.93639 0.94383 0.91005 0.92567 0.76710 0.91603 0.91609 0.87320 0.91220 0.86898 0.88782 0.81730 0.78982 0.79752 0.83986 0.90738 0.89876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.52 71.98 0.61 -4.79 16 2 C -0.12 -6.02 5.45 30.59 0.17 -5.85 16 3 C 0.28 14.31 2.24 44.24 0.10 14.41 16 4 H 0.00 0.09 7.58 -2.38 -0.02 0.07 16 5 C -0.55 -29.47 8.73 25.60 0.22 -29.25 16 6 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 7 C 0.02 0.99 5.29 84.65 0.45 1.44 16 8 N -0.91 -52.36 11.30 21.45 0.24 -52.12 16 9 Si 0.97 42.95 29.54 68.60 2.03 44.98 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 13 N -0.71 -29.15 4.93 -446.08 -2.20 -31.35 16 14 C 0.51 18.98 5.72 87.66 0.50 19.48 16 15 O -0.58 -25.83 13.12 -3.04 -0.04 -25.87 16 16 C -0.11 -2.84 2.68 -11.46 -0.03 -2.87 16 17 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 18 C -0.10 -2.08 4.46 30.62 0.14 -1.94 16 19 C -0.12 -1.63 6.08 30.67 0.19 -1.44 16 20 C 0.09 1.09 5.41 86.37 0.47 1.55 16 21 N -0.59 -11.91 2.98 -821.89 -2.45 -14.36 16 22 C 0.56 13.07 7.30 86.87 0.63 13.71 16 23 O -0.57 -18.66 16.49 -3.77 -0.06 -18.73 16 24 C -0.09 -1.53 5.05 -19.88 -0.10 -1.63 16 25 C -0.14 -1.56 7.48 22.63 0.17 -1.39 16 26 C 0.10 1.04 11.17 84.67 0.95 1.98 16 27 N -0.49 -7.11 10.34 -196.01 -2.03 -9.13 16 28 C 0.10 1.32 11.17 84.68 0.95 2.27 16 29 C -0.14 -2.14 9.86 22.63 0.22 -1.91 16 30 C 0.13 3.26 5.55 86.35 0.48 3.74 16 31 H 0.03 1.35 7.85 -2.39 -0.02 1.33 16 32 H 0.04 1.90 5.64 -2.39 -0.01 1.89 16 33 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.07 3.97 5.95 -2.39 -0.01 3.96 16 36 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 37 H 0.40 14.79 8.08 -92.71 -0.75 14.04 16 38 H 0.07 1.54 8.13 -2.39 -0.02 1.52 16 39 H 0.07 1.58 8.07 -2.39 -0.02 1.56 16 40 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.11 0.95 4.51 -2.39 -0.01 0.94 16 43 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.17 1.06 7.07 -2.91 -0.02 1.04 16 45 H 0.19 0.68 8.06 -2.91 -0.02 0.66 16 46 H 0.19 1.39 8.06 -2.91 -0.02 1.37 16 47 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 48 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.08 2.45 6.64 -2.39 -0.02 2.44 16 Total: -1.00 -73.97 388.91 1.82 -72.14 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.22 Total: 26.94 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 6.11 Total: 7.50 kcal Atomic # 7 Polarization: -100.54 SS G_CDS: -6.43 Total: -106.97 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -0.10 Total: -44.60 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -73.97 1.82 -72.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183862492.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.761 kcal (2) G-P(sol) polarization free energy of solvation -73.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds