Wall clock time and date at job start Wed Apr 1 2020 02:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47172 * 2 1 4 4 H 1.08999 * 109.46738 * 55.00210 * 3 2 1 5 5 C 1.50697 * 109.46682 * 175.00443 * 3 2 1 6 6 H 1.07999 * 120.00300 * 120.00498 * 5 3 2 7 7 C 1.37881 * 120.00181 * 299.99683 * 5 3 2 8 8 N 1.31513 * 119.99562 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00047 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47250 * 60.00410 * 9 7 5 11 11 H 1.48500 * 109.47331 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47217 * 300.00039 * 9 7 5 13 13 N 1.46497 * 109.47128 * 295.00124 * 3 2 1 14 14 C 1.34784 * 119.99814 * 85.00196 * 13 3 2 15 15 O 1.21282 * 120.00001 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99818 * 179.97438 * 14 13 3 17 17 H 1.08999 * 110.32835 * 39.21839 * 16 14 13 18 18 C 1.54905 * 110.46077 * 276.91658 * 16 14 13 19 19 C 1.55155 * 101.58503 * 204.10712 * 18 16 14 20 20 C 1.54326 * 102.93873 * 35.50145 * 19 18 16 21 21 N 1.47018 * 107.27320 * 337.80690 * 20 19 18 22 22 C 1.34776 * 125.64783 * 178.90084 * 21 20 19 23 23 O 1.21586 * 120.00007 * 180.02562 * 22 21 20 24 24 N 1.34774 * 120.00338 * 0.03366 * 22 21 20 25 25 C 1.39937 * 120.00514 * 174.68160 * 24 22 21 26 26 C 1.38872 * 120.07088 * 326.56476 * 25 24 22 27 27 C 1.38110 * 119.93002 * 179.76730 * 26 25 24 28 28 C 1.38277 * 120.07074 * 0.50525 * 27 26 25 29 29 C 1.38285 * 120.14192 * 359.74849 * 28 27 26 30 30 C 1.38115 * 120.06751 * 359.97438 * 29 28 27 31 31 H 1.09001 * 109.47421 * 59.99527 * 1 2 3 32 32 H 1.08996 * 109.47482 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46362 * 299.99692 * 1 2 3 34 34 H 1.09004 * 109.46362 * 240.00308 * 2 1 3 35 35 H 1.09000 * 109.46901 * 120.00512 * 2 1 3 36 36 H 0.97003 * 119.99760 * 180.02562 * 8 7 5 37 37 H 0.97001 * 120.00457 * 265.00088 * 13 3 2 38 38 H 1.09006 * 111.00489 * 322.17960 * 18 16 14 39 39 H 1.09003 * 111.00435 * 85.98971 * 18 16 14 40 40 H 1.08998 * 110.72029 * 277.14311 * 19 18 16 41 41 H 1.08999 * 110.72412 * 153.86134 * 19 18 16 42 42 H 1.09006 * 109.88057 * 218.38871 * 20 19 18 43 43 H 1.09002 * 109.88053 * 97.22607 * 20 19 18 44 44 H 0.97003 * 119.99672 * 354.67599 * 24 22 21 45 45 H 1.08005 * 120.03009 * 359.97438 * 26 25 24 46 46 H 1.07997 * 119.96061 * 180.25296 * 27 26 25 47 47 H 1.08005 * 119.93175 * 179.71643 * 28 27 26 48 48 H 1.07993 * 119.96437 * 180.02562 * 29 28 27 49 49 H 1.07999 * 120.03316 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1237 6 1 4.1473 1.8888 -0.6524 7 6 4.1434 0.8783 1.2278 8 7 3.4063 0.3365 2.1727 9 14 6.0050 0.8810 1.3815 10 1 6.4997 2.2812 1.3819 11 1 6.3980 0.2164 2.6500 12 1 6.5975 0.1470 0.2346 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3668 15 8 -0.3395 2.6320 -0.4342 16 6 0.0367 3.3388 -2.6543 17 1 0.4018 2.7691 -3.5089 18 6 0.5834 4.7874 -2.6987 19 6 -0.4018 5.4621 -3.6894 20 6 -1.7431 4.7697 -3.3682 21 7 -1.4285 3.4861 -2.7242 22 6 -2.3303 2.5924 -2.2718 23 8 -1.9545 1.5589 -1.7532 24 7 -3.6486 2.8443 -2.3944 25 6 -4.5842 1.8705 -2.0274 26 6 -4.2929 0.5242 -2.2036 27 6 -5.2164 -0.4346 -1.8359 28 6 -6.4343 -0.0549 -1.3024 29 6 -6.7296 1.2850 -1.1305 30 6 -5.8080 2.2485 -1.4909 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3632 0.5138 0.8901 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 3.8294 -0.0613 2.9497 37 1 2.2719 2.1232 -1.9978 38 1 0.5304 5.2553 -1.7155 39 1 1.6025 4.8088 -3.0847 40 1 -0.1051 5.2686 -4.7202 41 1 -0.4659 6.5336 -3.5000 42 1 -2.3003 4.5959 -4.2888 43 1 -2.3280 5.3912 -2.6901 44 1 -3.9490 3.7006 -2.7370 45 1 -3.3437 0.2272 -2.6247 46 1 -4.9887 -1.4819 -1.9690 47 1 -7.1567 -0.8065 -1.0199 48 1 -7.6815 1.5784 -0.7132 49 1 -6.0391 3.2949 -1.3560 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183956634.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:59 Heat of formation + Delta-G solvation = -23.802552 kcal Electronic energy + Delta-G solvation = -31500.827084 eV Core-core repulsion = 27428.259626 eV Total energy + Delta-G solvation = -4072.567458 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.83021 -39.44368 -38.08850 -37.14054 -34.87179 -34.45527 -32.33422 -31.74223 -30.88721 -30.84106 -29.47967 -28.83333 -26.74330 -24.32356 -23.02998 -22.73140 -22.15590 -21.71301 -20.63140 -19.41852 -19.19554 -18.38785 -17.49992 -17.04169 -16.41577 -15.99493 -15.32559 -15.27069 -15.03448 -14.77801 -14.36205 -14.18009 -14.02900 -13.67561 -13.56536 -13.37628 -13.31991 -12.98500 -12.67773 -12.51594 -12.27153 -11.88944 -11.67633 -11.55156 -11.52039 -11.24830 -11.17529 -11.07940 -10.95617 -10.89067 -10.68928 -10.26352 -10.22516 -10.01904 -9.68595 -9.28990 -9.03607 -8.89125 -8.87196 -8.43295 -8.32637 -7.99634 -7.61507 -6.02964 -4.12685 1.36594 1.46255 2.45994 3.29307 3.33095 3.34761 3.35742 3.53226 3.80226 3.93747 4.23287 4.36490 4.45122 4.54418 4.74201 4.90385 4.97715 5.14087 5.16476 5.18650 5.27248 5.34724 5.43031 5.51840 5.56536 5.62295 5.64701 5.71908 5.76428 6.00436 6.03892 6.14872 6.35268 6.41455 6.55996 6.62889 6.68172 6.82011 6.96472 7.00941 7.12037 7.36159 7.48789 7.61372 7.70266 7.76763 7.92802 7.94025 8.04486 8.33304 8.78087 8.82659 8.90517 9.32643 9.55159 11.01876 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012476 B = 0.003299 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.753240 B = 8484.749495 C =10346.178923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C 0.277 3.723 4 H 0.045 0.955 5 C -0.533 4.533 6 H 0.059 0.941 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.710 5.710 14 C 0.500 3.500 15 O -0.515 6.515 16 C 0.133 3.867 17 H 0.089 0.911 18 C -0.121 4.121 19 C -0.127 4.127 20 C 0.099 3.901 21 N -0.619 5.619 22 C 0.719 3.281 23 O -0.524 6.524 24 N -0.689 5.689 25 C 0.178 3.822 26 C -0.119 4.119 27 C -0.099 4.099 28 C -0.145 4.145 29 C -0.102 4.102 30 C -0.154 4.154 31 H 0.072 0.928 32 H 0.012 0.988 33 H 0.039 0.961 34 H 0.026 0.974 35 H 0.093 0.907 36 H 0.264 0.736 37 H 0.384 0.616 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.400 0.600 45 H 0.136 0.864 46 H 0.123 0.877 47 H 0.119 0.881 48 H 0.122 0.878 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.439 8.742 -14.832 23.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C 0.175 3.825 4 H 0.063 0.937 5 C -0.572 4.572 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.727 3.273 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.359 5.359 14 C 0.282 3.718 15 O -0.391 6.391 16 C 0.025 3.975 17 H 0.107 0.893 18 C -0.160 4.160 19 C -0.165 4.165 20 C -0.025 4.025 21 N -0.358 5.358 22 C 0.421 3.579 23 O -0.396 6.396 24 N -0.336 5.336 25 C 0.083 3.917 26 C -0.139 4.139 27 C -0.117 4.117 28 C -0.164 4.164 29 C -0.120 4.120 30 C -0.175 4.175 31 H 0.091 0.909 32 H 0.031 0.969 33 H 0.059 0.941 34 H 0.045 0.955 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.216 0.784 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.235 0.765 45 H 0.153 0.847 46 H 0.141 0.859 47 H 0.137 0.863 48 H 0.140 0.860 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.677 7.789 -13.530 22.124 hybrid contribution 1.181 0.476 -0.324 1.314 sum -14.496 8.265 -13.854 21.688 Atomic orbital electron populations 1.21941 0.97261 0.97770 1.02938 1.21912 0.93391 0.99527 1.01586 1.18689 0.93710 0.89247 0.80865 0.93711 1.21218 0.90905 1.38946 1.06134 0.92274 1.24892 0.98393 0.94947 0.95504 1.69913 1.35065 1.37544 1.09304 0.86548 0.85155 0.78186 0.77397 1.20276 1.21210 1.20225 1.46377 1.14471 1.56555 1.18493 1.20015 0.83015 0.80033 0.88731 1.90715 1.50409 1.58095 1.39853 1.21793 0.79755 0.97686 0.98259 0.89326 1.22751 0.99518 0.92749 1.00959 1.22595 0.93660 1.00206 1.00013 1.22014 0.98432 0.85009 0.97004 1.47244 1.05079 1.20009 1.63500 1.15339 0.79820 0.83734 0.78968 1.91018 1.77593 1.25531 1.45420 1.42620 1.04151 1.18059 1.68810 1.17494 0.88838 0.88583 0.96831 1.21222 1.00401 0.91222 1.01097 1.21046 0.93319 0.99348 0.98023 1.21075 0.97393 0.96008 1.01900 1.20858 0.98876 0.92777 0.99531 1.20810 0.94403 0.99852 1.02477 0.90902 0.96934 0.94137 0.95534 0.88917 0.92628 0.78425 0.89800 0.88831 0.90196 0.89684 0.91513 0.91720 0.76466 0.84651 0.85907 0.86282 0.86013 0.86107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 8.51 37.16 0.32 -3.33 16 2 C -0.13 -3.31 5.45 -26.73 -0.15 -3.46 16 3 C 0.28 7.27 2.24 -69.08 -0.15 7.11 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.53 -14.42 8.73 -34.44 -0.30 -14.72 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -25.60 11.29 55.43 0.63 -24.97 16 9 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.71 -15.14 5.02 -54.93 -0.28 -15.41 16 14 C 0.50 10.18 4.88 -10.98 -0.05 10.12 16 15 O -0.52 -12.71 11.44 -18.16 -0.21 -12.92 16 16 C 0.13 1.93 3.56 -67.57 -0.24 1.69 16 17 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 18 C -0.12 -1.31 6.49 -24.59 -0.16 -1.46 16 19 C -0.13 -0.93 6.95 -24.90 -0.17 -1.10 16 20 C 0.10 0.86 6.16 -3.07 -0.02 0.84 16 21 N -0.62 -8.57 3.14 -170.03 -0.53 -9.10 16 22 C 0.72 11.93 7.48 -86.92 -0.65 11.28 16 23 O -0.52 -11.02 9.44 -18.42 -0.17 -11.20 16 24 N -0.69 -9.00 5.30 -14.22 -0.08 -9.08 16 25 C 0.18 2.47 6.28 -83.69 -0.53 1.94 16 26 C -0.12 -1.78 8.65 -39.39 -0.34 -2.12 16 27 C -0.10 -1.27 10.04 -39.61 -0.40 -1.66 16 28 C -0.14 -1.62 10.04 -39.55 -0.40 -2.02 16 29 C -0.10 -1.09 10.04 -39.61 -0.40 -1.49 16 30 C -0.15 -1.79 9.96 -39.39 -0.39 -2.18 16 31 H 0.07 1.85 3.40 -51.93 -0.18 1.68 16 32 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.04 1.12 7.85 -51.93 -0.41 0.71 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 2.69 5.95 -51.93 -0.31 2.38 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 37 H 0.38 7.04 8.54 -40.82 -0.35 6.69 16 38 H 0.08 1.06 8.05 -51.93 -0.42 0.64 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 44 H 0.40 3.79 7.80 -40.82 -0.32 3.47 16 45 H 0.14 2.27 6.43 -52.48 -0.34 1.93 16 46 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 47 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 48 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 49 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 386.24 15.07 5.82 5.82 Total: -1.00 -35.79 386.24 -11.29 -47.08 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -7.32 Total: 12.63 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -4.13 Total: 1.17 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.26 Total: -58.56 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.38 Total: -24.12 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.79 -11.29 -47.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183956634.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.273 kcal (2) G-P(sol) polarization free energy of solvation -35.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds