Wall clock time and date at job start Wed Apr 1 2020 02:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47172 * 2 1 4 4 H 1.08999 * 109.46738 * 55.00210 * 3 2 1 5 5 C 1.50697 * 109.46682 * 175.00443 * 3 2 1 6 6 H 1.07999 * 120.00300 * 120.00498 * 5 3 2 7 7 C 1.37881 * 120.00181 * 299.99683 * 5 3 2 8 8 N 1.31513 * 119.99562 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00047 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47250 * 60.00410 * 9 7 5 11 11 H 1.48500 * 109.47331 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47217 * 300.00039 * 9 7 5 13 13 N 1.46497 * 109.47128 * 295.00124 * 3 2 1 14 14 C 1.34784 * 119.99814 * 85.00196 * 13 3 2 15 15 O 1.21282 * 120.00001 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99818 * 179.97438 * 14 13 3 17 17 H 1.08999 * 110.32835 * 39.21839 * 16 14 13 18 18 C 1.54905 * 110.46077 * 276.91658 * 16 14 13 19 19 C 1.55155 * 101.58503 * 204.10712 * 18 16 14 20 20 C 1.54326 * 102.93873 * 35.50145 * 19 18 16 21 21 N 1.47018 * 107.27320 * 337.80690 * 20 19 18 22 22 C 1.34776 * 125.64783 * 178.90084 * 21 20 19 23 23 O 1.21586 * 120.00007 * 180.02562 * 22 21 20 24 24 N 1.34774 * 120.00338 * 0.03366 * 22 21 20 25 25 C 1.39937 * 120.00514 * 174.68160 * 24 22 21 26 26 C 1.38872 * 120.07088 * 326.56476 * 25 24 22 27 27 C 1.38110 * 119.93002 * 179.76730 * 26 25 24 28 28 C 1.38277 * 120.07074 * 0.50525 * 27 26 25 29 29 C 1.38285 * 120.14192 * 359.74849 * 28 27 26 30 30 C 1.38115 * 120.06751 * 359.97438 * 29 28 27 31 31 H 1.09001 * 109.47421 * 59.99527 * 1 2 3 32 32 H 1.08996 * 109.47482 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46362 * 299.99692 * 1 2 3 34 34 H 1.09004 * 109.46362 * 240.00308 * 2 1 3 35 35 H 1.09000 * 109.46901 * 120.00512 * 2 1 3 36 36 H 0.97003 * 119.99760 * 180.02562 * 8 7 5 37 37 H 0.97001 * 120.00457 * 265.00088 * 13 3 2 38 38 H 1.09006 * 111.00489 * 322.17960 * 18 16 14 39 39 H 1.09003 * 111.00435 * 85.98971 * 18 16 14 40 40 H 1.08998 * 110.72029 * 277.14311 * 19 18 16 41 41 H 1.08999 * 110.72412 * 153.86134 * 19 18 16 42 42 H 1.09006 * 109.88057 * 218.38871 * 20 19 18 43 43 H 1.09002 * 109.88053 * 97.22607 * 20 19 18 44 44 H 0.97003 * 119.99672 * 354.67599 * 24 22 21 45 45 H 1.08005 * 120.03009 * 359.97438 * 26 25 24 46 46 H 1.07997 * 119.96061 * 180.25296 * 27 26 25 47 47 H 1.08005 * 119.93175 * 179.71643 * 28 27 26 48 48 H 1.07993 * 119.96437 * 180.02562 * 29 28 27 49 49 H 1.07999 * 120.03316 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1237 6 1 4.1473 1.8888 -0.6524 7 6 4.1434 0.8783 1.2278 8 7 3.4063 0.3365 2.1727 9 14 6.0050 0.8810 1.3815 10 1 6.4997 2.2812 1.3819 11 1 6.3980 0.2164 2.6500 12 1 6.5975 0.1470 0.2346 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3668 15 8 -0.3395 2.6320 -0.4342 16 6 0.0367 3.3388 -2.6543 17 1 0.4018 2.7691 -3.5089 18 6 0.5834 4.7874 -2.6987 19 6 -0.4018 5.4621 -3.6894 20 6 -1.7431 4.7697 -3.3682 21 7 -1.4285 3.4861 -2.7242 22 6 -2.3303 2.5924 -2.2718 23 8 -1.9545 1.5589 -1.7532 24 7 -3.6486 2.8443 -2.3944 25 6 -4.5842 1.8705 -2.0274 26 6 -4.2929 0.5242 -2.2036 27 6 -5.2164 -0.4346 -1.8359 28 6 -6.4343 -0.0549 -1.3024 29 6 -6.7296 1.2850 -1.1305 30 6 -5.8080 2.2485 -1.4909 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3632 0.5138 0.8901 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 3.8294 -0.0613 2.9497 37 1 2.2719 2.1232 -1.9978 38 1 0.5304 5.2553 -1.7155 39 1 1.6025 4.8088 -3.0847 40 1 -0.1051 5.2686 -4.7202 41 1 -0.4659 6.5336 -3.5000 42 1 -2.3003 4.5959 -4.2888 43 1 -2.3280 5.3912 -2.6901 44 1 -3.9490 3.7006 -2.7370 45 1 -3.3437 0.2272 -2.6247 46 1 -4.9887 -1.4819 -1.9690 47 1 -7.1567 -0.8065 -1.0199 48 1 -7.6815 1.5784 -0.7132 49 1 -6.0391 3.2949 -1.3560 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183956634.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:58 Heat of formation + Delta-G solvation = -47.543761 kcal Electronic energy + Delta-G solvation = -31501.856580 eV Core-core repulsion = 27428.259626 eV Total energy + Delta-G solvation = -4073.596954 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.98646 -40.67332 -39.43739 -38.25312 -36.76158 -35.66347 -34.27204 -32.99493 -32.58286 -31.79737 -30.61538 -29.88756 -28.71595 -25.50674 -24.84210 -23.76689 -23.33569 -22.73299 -21.90034 -21.17411 -20.66382 -19.69229 -18.70715 -18.21645 -17.92576 -17.15213 -17.06493 -16.59991 -16.36793 -16.14411 -15.93440 -15.41475 -15.14245 -14.89648 -14.64918 -14.57743 -14.44021 -14.28083 -14.21847 -13.71613 -13.53981 -13.52968 -13.21091 -13.15142 -12.88413 -12.67333 -12.57527 -12.55714 -12.24733 -12.16336 -12.13291 -12.00305 -11.69205 -11.54759 -11.33738 -11.04465 -10.94583 -10.59158 -10.45066 -9.83323 -9.65137 -9.50441 -8.98469 -8.14376 -6.33135 0.40421 0.50340 1.39583 1.43705 1.46744 1.54399 2.01104 2.17644 2.37369 2.65536 2.95592 3.02310 3.14163 3.59026 3.62360 3.99537 4.01823 4.10677 4.18356 4.21763 4.32434 4.46587 4.47950 4.54644 4.59951 4.61650 4.69031 4.72300 4.83392 4.87836 4.90447 5.07589 5.11035 5.12367 5.22235 5.30358 5.31543 5.41994 5.44248 5.51106 5.57960 5.64548 5.67623 5.68622 5.84764 5.94591 5.99867 6.15729 6.18895 6.76474 6.91444 7.09288 7.35102 7.59901 7.75320 8.90913 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012476 B = 0.003299 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.753240 B = 8484.749495 C =10346.178923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.116 4.116 3 C 0.289 3.711 4 H -0.011 1.011 5 C -0.546 4.546 6 H 0.076 0.924 7 C 0.010 3.990 8 N -0.919 5.919 9 Si 0.975 3.025 10 H -0.267 1.267 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.709 5.709 14 C 0.493 3.507 15 O -0.563 6.563 16 C 0.136 3.864 17 H 0.109 0.891 18 C -0.117 4.117 19 C -0.110 4.110 20 C 0.089 3.911 21 N -0.622 5.622 22 C 0.707 3.293 23 O -0.580 6.580 24 N -0.674 5.674 25 C 0.154 3.846 26 C -0.148 4.148 27 C -0.114 4.114 28 C -0.144 4.144 29 C -0.099 4.099 30 C -0.154 4.154 31 H 0.079 0.921 32 H 0.021 0.979 33 H 0.006 0.994 34 H 0.034 0.966 35 H 0.065 0.935 36 H 0.263 0.737 37 H 0.401 0.599 38 H 0.059 0.941 39 H 0.116 0.884 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.418 0.582 45 H 0.105 0.895 46 H 0.130 0.870 47 H 0.147 0.853 48 H 0.157 0.843 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.856 10.888 -17.262 25.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.155 4.155 3 C 0.185 3.815 4 H 0.006 0.994 5 C -0.584 4.584 6 H 0.094 0.906 7 C -0.189 4.189 8 N -0.557 5.557 9 Si 0.799 3.201 10 H -0.192 1.192 11 H -0.214 1.214 12 H -0.188 1.188 13 N -0.359 5.359 14 C 0.278 3.722 15 O -0.441 6.441 16 C 0.028 3.972 17 H 0.127 0.873 18 C -0.156 4.156 19 C -0.148 4.148 20 C -0.032 4.032 21 N -0.361 5.361 22 C 0.410 3.590 23 O -0.455 6.455 24 N -0.323 5.323 25 C 0.059 3.941 26 C -0.168 4.168 27 C -0.132 4.132 28 C -0.163 4.163 29 C -0.118 4.118 30 C -0.174 4.174 31 H 0.097 0.903 32 H 0.040 0.960 33 H 0.026 0.974 34 H 0.053 0.947 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.235 0.765 38 H 0.078 0.922 39 H 0.134 0.866 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.113 0.887 43 H 0.091 0.909 44 H 0.256 0.744 45 H 0.123 0.877 46 H 0.148 0.852 47 H 0.165 0.835 48 H 0.175 0.825 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.115 10.010 -16.043 24.845 hybrid contribution 1.188 -0.190 0.463 1.289 sum -14.927 9.820 -15.579 23.706 Atomic orbital electron populations 1.21758 0.96854 0.97832 1.01610 1.21771 0.93493 0.99805 1.00467 1.18168 0.93481 0.88463 0.81393 0.99360 1.21579 0.91248 1.38882 1.06719 0.90590 1.25878 1.03673 0.94354 0.95016 1.70096 1.37295 1.38432 1.09917 0.85366 0.78665 0.78617 0.77477 1.19205 1.21433 1.18811 1.46132 1.15676 1.56699 1.17407 1.21095 0.81701 0.78980 0.90419 1.90691 1.51512 1.59627 1.42273 1.21884 0.80824 0.99717 0.94811 0.87303 1.22796 1.01690 0.89968 1.01151 1.22637 0.91041 1.00963 1.00142 1.22411 1.00030 0.82796 0.97983 1.47383 1.04332 1.21251 1.63085 1.15689 0.80986 0.83563 0.78794 1.90960 1.78708 1.27976 1.47903 1.42381 1.02931 1.18655 1.68345 1.17758 0.89939 0.88340 0.98042 1.21156 0.99935 0.92725 1.03024 1.21252 0.93995 0.99486 0.98504 1.21439 0.96928 0.97266 1.00677 1.21328 0.99890 0.92291 0.98242 1.21152 0.93348 1.01584 1.01329 0.90266 0.95991 0.97429 0.94700 0.91656 0.92761 0.76461 0.92178 0.86571 0.87645 0.87261 0.88669 0.90861 0.74404 0.87726 0.85218 0.83526 0.82547 0.83490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.77 8.51 71.98 0.61 -6.16 16 2 C -0.12 -6.48 5.45 30.60 0.17 -6.31 16 3 C 0.29 15.92 2.24 44.25 0.10 16.02 16 4 H -0.01 -0.76 7.58 -2.39 -0.02 -0.78 16 5 C -0.55 -30.02 8.73 25.60 0.22 -29.79 16 6 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 7 C 0.01 0.58 5.29 84.66 0.45 1.03 16 8 N -0.92 -55.53 11.29 21.45 0.24 -55.29 16 9 Si 0.97 43.26 29.54 68.60 2.03 45.28 16 10 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 13 N -0.71 -31.11 5.02 -446.09 -2.24 -33.35 16 14 C 0.49 20.78 4.88 87.66 0.43 21.21 16 15 O -0.56 -29.52 11.44 19.64 0.22 -29.30 16 16 C 0.14 3.83 3.56 44.72 0.16 3.99 16 17 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 18 C -0.12 -2.26 6.49 31.98 0.21 -2.06 16 19 C -0.11 -1.15 6.95 31.78 0.22 -0.93 16 20 C 0.09 1.28 6.16 86.73 0.53 1.82 16 21 N -0.62 -16.75 3.14 -810.13 -2.54 -19.29 16 22 C 0.71 24.10 7.48 179.06 1.34 25.44 16 23 O -0.58 -25.93 9.44 18.69 0.18 -25.76 16 24 N -0.67 -17.63 5.30 -317.18 -1.68 -19.31 16 25 C 0.15 4.34 6.28 38.15 0.24 4.58 16 26 C -0.15 -4.70 8.65 22.39 0.19 -4.51 16 27 C -0.11 -3.01 10.04 22.25 0.22 -2.79 16 28 C -0.14 -3.03 10.04 22.29 0.22 -2.81 16 29 C -0.10 -1.89 10.04 22.25 0.22 -1.66 16 30 C -0.15 -3.32 9.96 22.39 0.22 -3.10 16 31 H 0.08 4.29 3.40 -2.39 -0.01 4.28 16 32 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.01 0.40 7.85 -2.38 -0.02 0.38 16 34 H 0.03 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.07 4.01 5.95 -2.39 -0.01 3.99 16 36 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 37 H 0.40 14.63 8.54 -92.71 -0.79 13.84 16 38 H 0.06 1.46 8.05 -2.38 -0.02 1.44 16 39 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 43 H 0.07 0.95 8.12 -2.39 -0.02 0.93 16 44 H 0.42 7.35 7.80 -92.71 -0.72 6.62 16 45 H 0.10 3.91 6.43 -2.91 -0.02 3.89 16 46 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 47 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 48 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 49 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -86.12 386.24 1.44 -84.68 By element: Atomic # 1 Polarization: 38.90 SS G_CDS: -0.53 Total: 38.36 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: 5.77 Total: 13.97 kcal Atomic # 7 Polarization: -121.02 SS G_CDS: -6.22 Total: -127.24 kcal Atomic # 8 Polarization: -55.46 SS G_CDS: 0.40 Total: -55.06 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -86.12 1.44 -84.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183956634.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.134 kcal (2) G-P(sol) polarization free energy of solvation -86.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds