Wall clock time and date at job start Wed Apr 1 2020 03:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47242 * 2 1 4 4 N 1.46501 * 109.47497 * 179.97438 * 3 2 1 5 5 C 1.46704 * 119.81326 * 89.99887 * 4 3 2 6 6 C 1.53036 * 109.06836 * 108.72949 * 5 4 3 7 7 C 1.52444 * 110.17150 * 88.68248 * 6 5 4 8 8 N 1.46071 * 111.51758 * 297.32943 * 7 6 5 9 9 C 1.34777 * 119.81229 * 242.92395 * 8 7 6 10 10 O 1.21578 * 119.99933 * 4.95028 * 9 8 7 11 11 N 1.34772 * 119.99678 * 184.95510 * 9 8 7 12 12 C 1.39242 * 119.99893 * 185.04751 * 11 9 8 13 13 C 1.39475 * 119.83631 * 324.02854 * 12 11 9 14 14 C 1.36374 * 120.17262 * 180.22772 * 13 12 11 15 15 C 1.40875 * 119.82273 * 359.50041 * 14 13 12 16 16 C 1.41158 * 120.15985 * 180.24886 * 15 14 13 17 17 H 1.08004 * 119.99967 * 204.49607 * 16 15 14 18 18 C 1.39895 * 120.00331 * 24.49926 * 16 15 14 19 19 N 1.30889 * 119.99761 * 17.80455 * 18 16 15 20 20 Si 1.86793 * 120.00363 * 197.80172 * 18 16 15 21 21 H 1.48495 * 109.47418 * 84.99060 * 20 18 16 22 22 H 1.48498 * 109.47282 * 204.99142 * 20 18 16 23 23 H 1.48500 * 109.47045 * 324.99145 * 20 18 16 24 24 C 1.40858 * 119.67460 * 0.49255 * 15 14 13 25 25 C 1.36377 * 119.82930 * 359.76240 * 24 15 14 26 26 C 1.46664 * 120.37414 * 63.19312 * 8 7 6 27 27 C 1.34240 * 119.81932 * 269.98195 * 4 3 2 28 28 O 1.21289 * 120.35067 * 357.11966 * 27 4 3 29 29 H 1.09007 * 109.47070 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47764 * 299.99813 * 1 2 3 31 31 H 1.09004 * 109.46947 * 59.99992 * 1 2 3 32 32 H 1.08999 * 109.47781 * 239.99632 * 2 1 3 33 33 H 1.09004 * 109.46947 * 120.00008 * 2 1 3 34 34 H 1.09006 * 109.46967 * 60.00057 * 3 2 1 35 35 H 1.09000 * 109.47533 * 300.00200 * 3 2 1 36 36 H 1.09001 * 109.53767 * 348.85402 * 5 4 3 37 37 H 1.08992 * 109.60665 * 228.64635 * 5 4 3 38 38 H 1.09003 * 109.35364 * 328.46387 * 6 5 4 39 39 H 1.09004 * 109.35262 * 208.89786 * 6 5 4 40 40 H 1.09011 * 109.07158 * 176.80778 * 7 6 5 41 41 H 1.08998 * 109.02269 * 57.81986 * 7 6 5 42 42 H 0.97003 * 120.00344 * 5.04968 * 11 9 8 43 43 H 1.08001 * 119.91705 * 359.94792 * 13 12 11 44 44 H 1.08006 * 120.08872 * 179.74044 * 14 13 12 45 45 H 0.97002 * 120.00011 * 179.97438 * 19 18 16 46 46 H 1.08005 * 120.08702 * 179.73415 * 24 15 14 47 47 H 1.08002 * 119.91319 * 179.97438 * 25 24 15 48 48 H 1.08995 * 109.60149 * 37.51991 * 26 8 7 49 49 H 1.08998 * 109.59716 * 157.99546 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.2349 1.4423 -1.2720 6 6 4.8864 2.8121 -1.4748 7 6 6.2730 2.8337 -0.8416 8 7 6.2052 2.6320 0.6035 9 6 6.6245 3.6053 1.4362 10 8 6.9729 4.6804 0.9881 11 7 6.6576 3.3866 2.7657 12 6 6.9896 4.4235 3.6337 13 6 7.9479 5.3642 3.2567 14 6 8.2816 6.3799 4.1033 15 6 7.6481 6.4834 5.3573 16 6 7.9843 7.5348 6.2371 17 1 7.8293 7.4202 7.2998 18 6 8.5182 8.7254 5.7326 19 7 8.3892 9.0140 4.4624 20 14 9.4152 9.9033 6.8715 21 1 10.8349 9.4862 6.9967 22 1 9.3506 11.2777 6.3128 23 1 8.7732 9.8825 8.2104 24 6 6.6813 5.5296 5.7310 25 6 6.3618 4.5165 4.8758 26 6 5.6891 1.3742 1.1534 27 6 4.1720 1.4431 1.1656 28 8 3.5694 1.4962 2.2168 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.5420 1.2436 -2.0896 37 1 5.0053 0.6717 -1.2516 38 1 4.2659 3.5794 -1.0118 39 1 4.9734 3.0163 -2.5420 40 1 6.7427 3.7961 -1.0453 41 1 6.8777 2.0419 -1.2837 42 1 6.4502 2.5069 3.1179 43 1 8.4301 5.2856 2.2935 44 1 9.0269 7.1052 3.8117 45 1 8.7591 9.8396 4.1126 46 1 6.1945 5.6001 6.6926 47 1 5.6210 3.7843 5.1611 48 1 6.0137 0.5417 0.5292 49 1 6.0609 1.2393 2.1691 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189460562.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:21 Heat of formation + Delta-G solvation = -29.660457 kcal Electronic energy + Delta-G solvation = -30545.941163 eV Core-core repulsion = 26473.119688 eV Total energy + Delta-G solvation = -4072.821475 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.97125 -39.54945 -37.56991 -36.75894 -35.79862 -34.47723 -33.70868 -32.88670 -31.70777 -29.40317 -28.88840 -28.66908 -26.28044 -25.80072 -24.66242 -22.52921 -22.10539 -21.22335 -20.72970 -19.69632 -18.98811 -18.35424 -17.53658 -17.22242 -16.67058 -16.47058 -15.33650 -15.30472 -15.17797 -15.08594 -14.68708 -14.19470 -14.01687 -13.92275 -13.75826 -13.52548 -13.27777 -12.94769 -12.70950 -12.62270 -12.39694 -12.29309 -12.20026 -11.97136 -11.76640 -11.65056 -11.52829 -11.37110 -11.24836 -11.07156 -11.00552 -10.87187 -10.43258 -10.26716 -9.94874 -9.81880 -9.46572 -9.14784 -8.98295 -8.68132 -8.58963 -7.42439 -6.93110 -6.66642 -4.21382 2.17954 2.66403 2.75824 3.02080 3.11754 3.14670 3.15570 3.22231 3.65627 3.98831 4.17171 4.21358 4.49125 4.55440 4.59030 4.68462 4.72060 4.73342 4.91093 4.97271 5.02467 5.15858 5.16456 5.31539 5.35858 5.40115 5.50651 5.69157 5.74354 5.79348 5.80331 5.90355 5.93954 6.23504 6.27432 6.40217 6.48620 6.81902 6.90294 7.09840 7.12908 7.16364 7.32761 7.38756 7.70747 7.86092 7.95271 8.07833 8.14190 8.34192 8.47054 8.71674 8.96182 8.96817 9.13832 10.26153 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019828 B = 0.002352 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.777870 B =11902.755106 C =12568.660098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.111 3.889 4 N -0.609 5.609 5 C 0.111 3.889 6 C -0.160 4.160 7 C 0.125 3.875 8 N -0.627 5.627 9 C 0.698 3.302 10 O -0.566 6.566 11 N -0.661 5.661 12 C 0.008 3.992 13 C -0.084 4.084 14 C -0.158 4.158 15 C 0.105 3.895 16 C -0.460 4.460 17 H 0.077 0.923 18 C 0.074 3.926 19 N -0.789 5.789 20 Si 0.908 3.092 21 H -0.267 1.267 22 H -0.279 1.279 23 H -0.263 1.263 24 C -0.215 4.215 25 C -0.103 4.103 26 C 0.098 3.902 27 C 0.502 3.498 28 O -0.529 6.529 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.067 0.933 42 H 0.391 0.609 43 H 0.107 0.893 44 H 0.120 0.880 45 H 0.280 0.720 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.100 0.900 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.203 -17.909 -14.610 24.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C -0.012 4.012 4 N -0.342 5.342 5 C -0.012 4.012 6 C -0.200 4.200 7 C 0.002 3.998 8 N -0.367 5.367 9 C 0.400 3.600 10 O -0.442 6.442 11 N -0.308 5.308 12 C -0.085 4.085 13 C -0.105 4.105 14 C -0.178 4.178 15 C 0.102 3.898 16 C -0.489 4.489 17 H 0.096 0.904 18 C -0.144 4.144 19 N -0.414 5.414 20 Si 0.733 3.267 21 H -0.192 1.192 22 H -0.204 1.204 23 H -0.187 1.187 24 C -0.236 4.236 25 C -0.123 4.123 26 C -0.029 4.029 27 C 0.287 3.713 28 O -0.404 6.404 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.120 0.880 41 H 0.085 0.915 42 H 0.226 0.774 43 H 0.125 0.875 44 H 0.137 0.863 45 H 0.091 0.909 46 H 0.113 0.887 47 H 0.108 0.892 48 H 0.118 0.882 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.224 -16.869 -14.549 23.746 hybrid contribution 0.057 0.086 0.454 0.465 sum -8.168 -16.782 -14.095 23.389 Atomic orbital electron populations 1.21691 0.95057 1.01925 1.02075 1.21869 0.96281 0.97059 1.02357 1.21581 0.79151 0.97025 1.03436 1.47965 1.06690 1.73375 1.06217 1.21753 0.96525 0.97558 0.85383 1.22383 0.97835 0.97803 1.01969 1.21184 0.96209 1.04211 0.78219 1.46930 1.68067 1.15400 1.06319 1.15957 0.79041 0.83299 0.81698 1.90924 1.54437 1.23324 1.75550 1.42260 1.71673 1.13069 1.03822 1.17001 1.04580 0.95053 0.91834 1.20548 0.96045 0.95157 0.98711 1.21000 1.02652 0.98571 0.95617 1.17669 0.88710 0.91094 0.92281 1.19529 1.36585 0.97784 0.95038 0.90448 1.25937 0.94223 0.98812 0.95422 1.69879 1.33923 1.23266 1.14362 0.86327 0.80521 0.78799 0.81048 1.19235 1.20417 1.18728 1.20530 1.03220 0.99628 1.00179 1.20076 0.98932 0.98927 0.94355 1.21907 0.89884 0.88804 1.02338 1.21412 0.90797 0.75653 0.83391 1.90753 1.70362 1.48429 1.30808 0.92473 0.92349 0.92647 0.92003 0.91581 0.89753 0.90622 0.89515 0.90582 0.90489 0.89268 0.88015 0.91494 0.77355 0.87537 0.86252 0.90866 0.88678 0.89203 0.88167 0.87404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.15 0.37 -0.60 16 2 C -0.14 -1.02 6.26 -26.74 -0.17 -1.19 16 3 C 0.11 0.99 5.36 -4.04 -0.02 0.97 16 4 N -0.61 -5.85 2.48 -173.15 -0.43 -6.28 16 5 C 0.11 0.70 5.83 -3.91 -0.02 0.67 16 6 C -0.16 -1.28 5.92 -27.00 -0.16 -1.44 16 7 C 0.13 1.28 5.90 -4.56 -0.03 1.25 16 8 N -0.63 -8.33 2.67 -180.66 -0.48 -8.82 16 9 C 0.70 13.22 8.10 -86.92 -0.70 12.51 16 10 O -0.57 -13.06 13.09 5.30 0.07 -12.99 16 11 N -0.66 -12.83 5.19 -14.10 -0.07 -12.90 16 12 C 0.01 0.18 6.30 -83.57 -0.53 -0.34 16 13 C -0.08 -2.19 8.61 -39.79 -0.34 -2.53 16 14 C -0.16 -4.38 8.64 -39.26 -0.34 -4.72 16 15 C 0.11 2.92 5.58 -106.80 -0.60 2.32 16 16 C -0.46 -12.56 9.04 -37.85 -0.34 -12.90 16 17 H 0.08 2.02 7.91 -52.48 -0.41 1.60 16 18 C 0.07 1.92 5.14 -17.33 -0.09 1.83 16 19 N -0.79 -21.36 10.95 55.55 0.61 -20.75 16 20 Si 0.91 19.21 29.59 -169.99 -5.03 14.18 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 24 C -0.22 -5.49 9.74 -39.26 -0.38 -5.88 16 25 C -0.10 -2.42 9.90 -39.79 -0.39 -2.82 16 26 C 0.10 1.04 5.56 -4.53 -0.03 1.01 16 27 C 0.50 6.33 7.27 -10.65 -0.08 6.26 16 28 O -0.53 -8.83 16.68 5.55 0.09 -8.74 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.98 7.37 -51.93 -0.38 0.59 16 35 H 0.08 0.53 8.02 -51.93 -0.42 0.12 16 36 H 0.09 0.37 7.91 -51.93 -0.41 -0.04 16 37 H 0.08 0.36 6.71 -51.93 -0.35 0.01 16 38 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.10 1.30 6.87 -51.92 -0.36 0.95 16 41 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 42 H 0.39 6.37 6.32 -40.82 -0.26 6.11 16 43 H 0.11 2.76 6.25 -52.49 -0.33 2.43 16 44 H 0.12 3.40 6.15 -52.48 -0.32 3.08 16 45 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 46 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 47 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 48 H 0.10 0.68 7.18 -51.93 -0.37 0.31 16 49 H 0.11 1.15 5.77 -51.93 -0.30 0.85 16 LS Contribution 390.85 15.07 5.89 5.89 Total: -1.00 -34.72 390.85 -10.47 -45.19 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -7.26 Total: 10.80 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -3.85 Total: -5.57 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: -0.38 Total: -48.75 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: 0.16 Total: -21.73 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.72 -10.47 -45.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189460562.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.528 kcal (2) G-P(sol) polarization free energy of solvation -34.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds