Wall clock time and date at job start Wed Apr 1 2020 03:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47242 * 2 1 4 4 N 1.46501 * 109.47497 * 179.97438 * 3 2 1 5 5 C 1.46704 * 119.81326 * 89.99887 * 4 3 2 6 6 C 1.53036 * 109.06836 * 108.72949 * 5 4 3 7 7 C 1.52444 * 110.17150 * 88.68248 * 6 5 4 8 8 N 1.46071 * 111.51758 * 297.32943 * 7 6 5 9 9 C 1.34777 * 119.81229 * 242.92395 * 8 7 6 10 10 O 1.21578 * 119.99933 * 4.95028 * 9 8 7 11 11 N 1.34772 * 119.99678 * 184.95510 * 9 8 7 12 12 C 1.39242 * 119.99893 * 185.04751 * 11 9 8 13 13 C 1.39475 * 119.83631 * 324.02854 * 12 11 9 14 14 C 1.36374 * 120.17262 * 180.22772 * 13 12 11 15 15 C 1.40875 * 119.82273 * 359.50041 * 14 13 12 16 16 C 1.41158 * 120.15985 * 180.24886 * 15 14 13 17 17 H 1.08004 * 119.99967 * 204.49607 * 16 15 14 18 18 C 1.39895 * 120.00331 * 24.49926 * 16 15 14 19 19 N 1.30889 * 119.99761 * 17.80455 * 18 16 15 20 20 Si 1.86793 * 120.00363 * 197.80172 * 18 16 15 21 21 H 1.48495 * 109.47418 * 84.99060 * 20 18 16 22 22 H 1.48498 * 109.47282 * 204.99142 * 20 18 16 23 23 H 1.48500 * 109.47045 * 324.99145 * 20 18 16 24 24 C 1.40858 * 119.67460 * 0.49255 * 15 14 13 25 25 C 1.36377 * 119.82930 * 359.76240 * 24 15 14 26 26 C 1.46664 * 120.37414 * 63.19312 * 8 7 6 27 27 C 1.34240 * 119.81932 * 269.98195 * 4 3 2 28 28 O 1.21289 * 120.35067 * 357.11966 * 27 4 3 29 29 H 1.09007 * 109.47070 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47764 * 299.99813 * 1 2 3 31 31 H 1.09004 * 109.46947 * 59.99992 * 1 2 3 32 32 H 1.08999 * 109.47781 * 239.99632 * 2 1 3 33 33 H 1.09004 * 109.46947 * 120.00008 * 2 1 3 34 34 H 1.09006 * 109.46967 * 60.00057 * 3 2 1 35 35 H 1.09000 * 109.47533 * 300.00200 * 3 2 1 36 36 H 1.09001 * 109.53767 * 348.85402 * 5 4 3 37 37 H 1.08992 * 109.60665 * 228.64635 * 5 4 3 38 38 H 1.09003 * 109.35364 * 328.46387 * 6 5 4 39 39 H 1.09004 * 109.35262 * 208.89786 * 6 5 4 40 40 H 1.09011 * 109.07158 * 176.80778 * 7 6 5 41 41 H 1.08998 * 109.02269 * 57.81986 * 7 6 5 42 42 H 0.97003 * 120.00344 * 5.04968 * 11 9 8 43 43 H 1.08001 * 119.91705 * 359.94792 * 13 12 11 44 44 H 1.08006 * 120.08872 * 179.74044 * 14 13 12 45 45 H 0.97002 * 120.00011 * 179.97438 * 19 18 16 46 46 H 1.08005 * 120.08702 * 179.73415 * 24 15 14 47 47 H 1.08002 * 119.91319 * 179.97438 * 25 24 15 48 48 H 1.08995 * 109.60149 * 37.51991 * 26 8 7 49 49 H 1.08998 * 109.59716 * 157.99546 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.2349 1.4423 -1.2720 6 6 4.8864 2.8121 -1.4748 7 6 6.2730 2.8337 -0.8416 8 7 6.2052 2.6320 0.6035 9 6 6.6245 3.6053 1.4362 10 8 6.9729 4.6804 0.9881 11 7 6.6576 3.3866 2.7657 12 6 6.9896 4.4235 3.6337 13 6 7.9479 5.3642 3.2567 14 6 8.2816 6.3799 4.1033 15 6 7.6481 6.4834 5.3573 16 6 7.9843 7.5348 6.2371 17 1 7.8293 7.4202 7.2998 18 6 8.5182 8.7254 5.7326 19 7 8.3892 9.0140 4.4624 20 14 9.4152 9.9033 6.8715 21 1 10.8349 9.4862 6.9967 22 1 9.3506 11.2777 6.3128 23 1 8.7732 9.8825 8.2104 24 6 6.6813 5.5296 5.7310 25 6 6.3618 4.5165 4.8758 26 6 5.6891 1.3742 1.1534 27 6 4.1720 1.4431 1.1656 28 8 3.5694 1.4962 2.2168 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.5420 1.2436 -2.0896 37 1 5.0053 0.6717 -1.2516 38 1 4.2659 3.5794 -1.0118 39 1 4.9734 3.0163 -2.5420 40 1 6.7427 3.7961 -1.0453 41 1 6.8777 2.0419 -1.2837 42 1 6.4502 2.5069 3.1179 43 1 8.4301 5.2856 2.2935 44 1 9.0269 7.1052 3.8117 45 1 8.7591 9.8396 4.1126 46 1 6.1945 5.6001 6.6926 47 1 5.6210 3.7843 5.1611 48 1 6.0137 0.5417 0.5292 49 1 6.0609 1.2393 2.1691 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189460562.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:20 Heat of formation + Delta-G solvation = -51.196525 kcal Electronic energy + Delta-G solvation = -30546.875037 eV Core-core repulsion = 26473.119688 eV Total energy + Delta-G solvation = -4073.755349 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.10368 -40.83986 -39.31403 -37.79328 -36.86137 -36.25637 -34.93624 -34.22685 -32.64419 -31.42009 -30.75247 -29.53236 -27.47300 -26.52649 -26.26091 -23.71682 -23.16861 -22.73738 -22.34520 -20.91298 -20.02495 -19.69767 -19.23807 -18.51538 -17.86642 -17.59183 -17.08916 -16.57974 -16.28138 -16.09609 -15.77547 -15.68821 -15.21930 -15.06672 -14.86779 -14.62541 -14.47895 -14.22699 -14.02867 -13.96912 -13.73076 -13.56413 -13.35216 -13.04822 -12.97568 -12.89598 -12.78993 -12.68465 -12.30434 -12.27412 -12.18111 -12.00574 -11.75596 -11.74232 -11.61807 -11.29861 -11.20458 -10.99197 -10.51760 -9.85754 -9.68990 -9.46568 -8.87271 -8.61457 -6.26956 0.84840 1.12449 1.15603 1.37905 1.49059 1.52350 1.84601 1.91983 2.15546 2.21601 2.75557 2.93052 3.38430 3.72889 3.79445 3.89069 3.93508 4.03120 4.08035 4.26452 4.33507 4.39638 4.40053 4.46797 4.48771 4.55211 4.68441 4.73938 4.82595 4.88994 4.92400 4.99133 5.07567 5.14223 5.15742 5.20948 5.25687 5.28603 5.33388 5.41358 5.47160 5.54702 5.63583 5.72566 5.99311 6.09798 6.10901 6.30762 6.34100 6.67573 6.88753 6.92422 7.00638 7.06127 7.54486 8.33705 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019828 B = 0.002352 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.777870 B =11902.755106 C =12568.660098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.107 3.893 4 N -0.603 5.603 5 C 0.107 3.893 6 C -0.151 4.151 7 C 0.115 3.885 8 N -0.614 5.614 9 C 0.692 3.308 10 O -0.615 6.615 11 N -0.659 5.659 12 C 0.020 3.980 13 C -0.094 4.094 14 C -0.180 4.180 15 C 0.074 3.926 16 C -0.493 4.493 17 H 0.082 0.918 18 C 0.029 3.971 19 N -0.828 5.828 20 Si 0.988 3.012 21 H -0.261 1.261 22 H -0.270 1.270 23 H -0.255 1.255 24 C -0.224 4.224 25 C -0.102 4.102 26 C 0.098 3.902 27 C 0.492 3.508 28 O -0.582 6.582 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.047 0.953 35 H 0.099 0.901 36 H 0.120 0.880 37 H 0.107 0.893 38 H 0.038 0.962 39 H 0.122 0.878 40 H 0.069 0.931 41 H 0.113 0.887 42 H 0.408 0.592 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.287 0.713 46 H 0.109 0.891 47 H 0.120 0.880 48 H 0.153 0.847 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.657 -20.283 -16.481 27.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.015 4.015 4 N -0.334 5.334 5 C -0.014 4.014 6 C -0.191 4.191 7 C -0.006 4.006 8 N -0.352 5.352 9 C 0.395 3.605 10 O -0.494 6.494 11 N -0.308 5.308 12 C -0.073 4.073 13 C -0.115 4.115 14 C -0.200 4.200 15 C 0.071 3.929 16 C -0.523 4.523 17 H 0.100 0.900 18 C -0.185 4.185 19 N -0.454 5.454 20 Si 0.808 3.192 21 H -0.185 1.185 22 H -0.194 1.194 23 H -0.178 1.178 24 C -0.244 4.244 25 C -0.123 4.123 26 C -0.028 4.028 27 C 0.278 3.722 28 O -0.461 6.461 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.118 0.882 36 H 0.138 0.862 37 H 0.125 0.875 38 H 0.057 0.943 39 H 0.140 0.860 40 H 0.088 0.912 41 H 0.131 0.869 42 H 0.246 0.754 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.098 0.902 46 H 0.127 0.873 47 H 0.138 0.862 48 H 0.171 0.829 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.711 -19.326 -16.498 26.862 hybrid contribution 0.089 0.691 0.848 1.098 sum -8.622 -18.635 -15.650 25.817 Atomic orbital electron populations 1.21691 0.94424 1.02498 1.02043 1.21776 0.96772 0.95694 1.02307 1.21663 0.78995 0.98068 1.02809 1.48134 1.07141 1.71437 1.06723 1.22096 0.97802 0.97047 0.84469 1.22338 0.95575 0.97902 1.03258 1.21556 0.98369 1.04306 0.76390 1.46914 1.66396 1.14965 1.06955 1.16199 0.78785 0.83812 0.81735 1.90897 1.56469 1.25754 1.76326 1.42098 1.71840 1.12885 1.03949 1.17039 1.02907 0.95028 0.92369 1.20571 0.96958 0.95747 0.98195 1.20920 1.03301 0.99220 0.96593 1.18007 0.89815 0.92387 0.92673 1.19808 1.38519 0.98685 0.95239 0.90034 1.26902 0.94256 1.00337 0.97035 1.69956 1.34777 1.24242 1.16399 0.85130 0.78997 0.76290 0.78735 1.18521 1.19443 1.17836 1.20773 1.02813 0.99695 1.01123 1.20346 0.99053 0.98979 0.93879 1.22157 0.88550 0.88683 1.03449 1.21785 0.91600 0.75266 0.83538 1.90730 1.71429 1.51101 1.32846 0.91593 0.93884 0.91217 0.89632 0.93849 0.93394 0.88240 0.86194 0.87541 0.94332 0.85970 0.91207 0.86920 0.75374 0.88211 0.88180 0.90209 0.87337 0.86177 0.82902 0.87707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.95 16 2 C -0.13 -1.63 6.26 30.59 0.19 -1.43 16 3 C 0.11 1.75 5.36 86.38 0.46 2.21 16 4 N -0.60 -10.06 2.48 -820.42 -2.03 -12.09 16 5 C 0.11 0.83 5.83 86.35 0.50 1.33 16 6 C -0.15 -1.93 5.92 30.42 0.18 -1.75 16 7 C 0.12 2.07 5.90 86.28 0.51 2.58 16 8 N -0.61 -15.30 2.67 -843.76 -2.25 -17.55 16 9 C 0.69 26.37 8.10 179.06 1.45 27.82 16 10 O -0.61 -29.38 13.09 -3.96 -0.05 -29.43 16 11 N -0.66 -25.57 5.19 -316.80 -1.64 -27.22 16 12 C 0.02 0.99 6.30 38.56 0.24 1.23 16 13 C -0.09 -5.12 8.61 22.13 0.19 -4.93 16 14 C -0.18 -10.53 8.64 22.48 0.19 -10.34 16 15 C 0.07 4.27 5.58 -21.28 -0.12 4.15 16 16 C -0.49 -27.86 9.04 23.39 0.21 -27.65 16 17 H 0.08 4.36 7.91 -2.91 -0.02 4.34 16 18 C 0.03 1.56 5.14 85.23 0.44 1.99 16 19 N -0.83 -46.64 10.95 21.82 0.24 -46.40 16 20 Si 0.99 40.00 29.59 68.60 2.03 42.03 16 21 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 22 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 23 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 24 C -0.22 -11.66 9.74 22.48 0.22 -11.44 16 25 C -0.10 -4.85 9.90 22.14 0.22 -4.63 16 26 C 0.10 1.80 5.56 85.98 0.48 2.28 16 27 C 0.49 11.69 7.27 88.11 0.64 12.33 16 28 O -0.58 -19.64 16.68 -3.06 -0.05 -19.69 16 29 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.05 1.14 7.37 -2.38 -0.02 1.13 16 35 H 0.10 1.13 8.02 -2.39 -0.02 1.11 16 36 H 0.12 0.26 7.91 -2.39 -0.02 0.24 16 37 H 0.11 0.29 6.71 -2.39 -0.02 0.27 16 38 H 0.04 0.81 8.04 -2.39 -0.02 0.79 16 39 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.07 1.76 6.87 -2.38 -0.02 1.74 16 41 H 0.11 1.06 8.08 -2.39 -0.02 1.04 16 42 H 0.41 12.96 6.32 -92.71 -0.59 12.37 16 43 H 0.10 5.47 6.25 -2.91 -0.02 5.45 16 44 H 0.10 6.12 6.15 -2.91 -0.02 6.10 16 45 H 0.29 14.67 8.30 -92.71 -0.77 13.90 16 46 H 0.11 5.22 8.06 -2.91 -0.02 5.20 16 47 H 0.12 4.92 8.06 -2.91 -0.02 4.90 16 48 H 0.15 1.23 7.18 -2.39 -0.02 1.22 16 49 H 0.10 2.03 5.77 -2.39 -0.01 2.01 16 Total: -1.00 -83.47 390.85 3.35 -80.11 By element: Atomic # 1 Polarization: 37.04 SS G_CDS: 0.39 Total: 37.43 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 6.73 Total: -7.20 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -5.69 Total: -103.25 kcal Atomic # 8 Polarization: -49.01 SS G_CDS: -0.10 Total: -49.12 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Total: -83.47 3.35 -80.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189460562.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.917 kcal (2) G-P(sol) polarization free energy of solvation -83.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds