Wall clock time and date at job start Wed Apr 1 2020 03:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 119.99919 * 2 1 4 4 N 1.46904 * 109.46923 * 124.15356 * 3 2 1 5 5 C 1.46893 * 111.00010 * 59.27608 * 4 3 2 6 6 C 1.52997 * 109.47414 * 66.04429 * 5 4 3 7 7 C 1.50704 * 109.47387 * 179.97438 * 6 5 4 8 8 C 1.34509 * 125.78997 * 89.99533 * 7 6 5 9 9 C 1.41384 * 106.84107 * 180.02562 * 8 7 6 10 10 C 1.34509 * 106.83931 * 0.02562 * 9 8 7 11 11 O 1.34297 * 108.42311 * 359.73717 * 10 9 8 12 12 C 1.46899 * 110.99798 * 295.31982 * 4 3 2 13 13 C 1.50701 * 109.46856 * 287.25940 * 12 4 3 14 14 O 1.21276 * 120.00462 * 354.40110 * 13 12 4 15 15 N 1.34780 * 119.99747 * 174.40272 * 13 12 4 16 16 C 1.46503 * 120.00130 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.46821 * 90.00157 * 16 15 13 18 18 H 1.08002 * 120.00409 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99902 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99822 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00095 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47285 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47315 * 119.99446 * 21 19 17 24 24 H 1.48496 * 109.47176 * 239.99620 * 21 19 17 25 25 C 1.46495 * 120.00158 * 0.02562 * 15 13 12 26 26 C 1.53002 * 109.47361 * 89.99781 * 25 15 13 27 27 C 1.47202 * 109.47334 * 180.02562 * 26 25 15 28 28 N 7.40639 * 87.96856 * 91.15115 * 2 1 3 29 29 H 1.07994 * 120.00423 * 0.02562 * 1 2 3 30 30 H 1.08007 * 119.99703 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.99912 * 179.97438 * 2 1 3 32 32 H 1.08994 * 109.46987 * 4.15144 * 3 2 1 33 33 H 1.08997 * 109.46926 * 244.15158 * 3 2 1 34 34 H 1.09006 * 109.47179 * 186.04844 * 5 4 3 35 35 H 1.09004 * 109.47172 * 306.04015 * 5 4 3 36 36 H 1.08996 * 109.47028 * 299.99635 * 6 5 4 37 37 H 1.09007 * 109.47084 * 60.00125 * 6 5 4 38 38 H 1.08006 * 126.57828 * 359.97115 * 8 7 6 39 39 H 1.08008 * 126.57426 * 179.97438 * 9 8 7 40 40 H 1.08003 * 125.78391 * 179.97438 * 10 9 8 41 41 H 1.08990 * 109.47536 * 47.25944 * 12 4 3 42 42 H 1.09004 * 109.46934 * 167.26584 * 12 4 3 43 43 H 1.09002 * 109.47119 * 210.00089 * 16 15 13 44 44 H 1.09003 * 109.47039 * 330.00412 * 16 15 13 45 45 H 0.96994 * 119.99549 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.47676 * 209.99947 * 25 15 13 47 47 H 1.08998 * 109.47119 * 330.00351 * 25 15 13 48 48 H 1.09002 * 109.47365 * 300.00649 * 26 25 15 49 49 H 1.09002 * 109.47032 * 60.00251 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9817 1.3404 1.1462 5 6 3.9388 0.2276 1.0883 6 6 4.8588 0.4085 -0.1208 7 6 5.8412 -0.7328 -0.1798 8 6 5.6560 -1.8975 -0.8266 9 6 6.8211 -2.6710 -0.6193 10 6 7.6484 -1.9330 0.1424 11 8 7.0519 -0.7578 0.4011 12 6 2.2408 1.3322 2.4146 13 6 1.5872 2.6739 2.6232 14 8 1.8067 3.5822 1.8501 15 7 0.7587 2.8646 3.6691 16 6 0.1237 4.1691 3.8723 17 6 -1.1955 4.2044 3.1445 18 1 -1.5275 3.3416 2.5861 19 6 -1.9782 5.3386 3.1907 20 7 -1.5737 6.3894 3.8702 21 14 -3.6136 5.3821 2.2892 22 1 -3.8368 4.0828 1.6056 23 1 -4.7089 5.6244 3.2623 24 1 -3.5952 6.4737 1.2827 25 6 0.4940 1.7677 4.6033 26 6 1.5199 1.8052 5.7378 27 6 1.2543 0.7026 6.6763 28 7 1.0474 -0.1487 7.4002 29 1 -0.5400 0.9352 -0.0004 30 1 -0.5400 -0.9354 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3575 2.1322 0.0744 33 1 2.6331 1.3957 -0.9248 34 1 4.5358 0.2140 2.0003 35 1 3.3968 -0.7135 0.9949 36 1 4.2619 0.4220 -1.0326 37 1 5.4009 1.3495 -0.0273 38 1 4.7841 -2.1867 -1.3947 39 1 7.0102 -3.6644 -0.9989 40 1 8.6279 -2.2329 0.4845 41 1 1.4759 0.5563 2.3837 42 1 2.9288 1.1316 3.2359 43 1 -0.0445 4.3294 4.9372 44 1 0.7735 4.9538 3.4848 45 1 -2.1245 7.1871 3.9030 46 1 -0.5088 1.8763 5.0166 47 1 0.5690 0.8161 4.0771 48 1 2.5227 1.6966 5.3247 49 1 1.4449 2.7568 6.2642 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272238979.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:53 Heat of formation + Delta-G solvation = 20.775171 kcal Electronic energy + Delta-G solvation = -30090.075695 eV Core-core repulsion = 26019.441273 eV Total energy + Delta-G solvation = -4070.634422 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.41035 -40.94383 -38.95039 -37.88566 -36.55872 -34.84993 -34.65235 -33.83643 -33.04001 -32.10966 -30.16967 -28.74547 -28.03169 -26.02768 -25.27184 -24.27756 -22.79438 -22.56674 -21.32351 -20.38352 -19.70061 -18.79026 -18.31933 -18.21166 -17.88270 -17.23178 -16.95802 -16.77862 -16.62903 -16.06292 -15.81361 -15.59702 -15.49517 -15.15377 -14.66881 -14.49428 -14.28938 -14.24368 -14.06695 -13.66463 -13.59017 -13.52059 -13.44352 -13.21018 -13.13415 -13.03304 -12.88275 -12.70374 -12.63079 -12.50259 -12.48926 -12.17341 -12.14176 -11.84899 -11.74953 -11.59839 -10.78497 -10.56963 -10.48396 -10.33094 -9.39395 -9.31900 -9.15161 -8.15442 -6.27059 0.86637 1.30821 1.39244 1.41960 1.51904 1.70989 1.76756 1.84801 1.98595 2.15075 2.31533 2.45689 3.00513 3.15860 3.24818 3.81920 3.90818 3.99372 4.02090 4.06792 4.13435 4.16472 4.22083 4.26113 4.36588 4.39601 4.45680 4.56242 4.63144 4.71829 4.83589 4.86304 4.97676 5.00069 5.01845 5.07931 5.13494 5.15626 5.16675 5.34052 5.38775 5.64897 5.66332 5.69168 5.71826 5.92810 6.07936 6.13711 6.17066 6.30353 6.61633 6.81278 6.88840 7.38808 7.64510 8.91275 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010773 B = 0.002779 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.580179 B =10074.555829 C =11455.807256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.191 4.191 3 C 0.078 3.922 4 N -0.526 5.526 5 C 0.064 3.936 6 C -0.033 4.033 7 C -0.019 4.019 8 C -0.220 4.220 9 C -0.228 4.228 10 C -0.048 4.048 11 O -0.195 6.195 12 C 0.043 3.957 13 C 0.504 3.496 14 O -0.569 6.569 15 N -0.601 5.601 16 C 0.261 3.739 17 C -0.532 4.532 18 H 0.052 0.948 19 C 0.010 3.990 20 N -0.926 5.926 21 Si 0.955 3.045 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.286 1.286 25 C 0.115 3.885 26 C -0.038 4.038 27 C 0.246 3.754 28 N -0.489 5.489 29 H 0.075 0.925 30 H 0.114 0.886 31 H 0.132 0.868 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.158 0.842 39 H 0.165 0.835 40 H 0.232 0.768 41 H 0.080 0.920 42 H 0.129 0.871 43 H 0.032 0.968 44 H 0.003 0.997 45 H 0.264 0.736 46 H 0.082 0.918 47 H 0.102 0.898 48 H 0.136 0.864 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.465 -19.207 -6.341 24.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.211 4.211 3 C -0.049 4.049 4 N -0.249 5.249 5 C -0.063 4.063 6 C -0.070 4.070 7 C -0.069 4.069 8 C -0.239 4.239 9 C -0.247 4.247 10 C -0.115 4.115 11 O -0.091 6.091 12 C -0.088 4.088 13 C 0.292 3.708 14 O -0.447 6.447 15 N -0.333 5.333 16 C 0.140 3.860 17 C -0.571 4.571 18 H 0.070 0.930 19 C -0.189 4.189 20 N -0.567 5.567 21 Si 0.781 3.219 22 H -0.191 1.191 23 H -0.200 1.200 24 H -0.212 1.212 25 C -0.010 4.010 26 C -0.080 4.080 27 C -0.071 4.071 28 N -0.167 5.167 29 H 0.093 0.907 30 H 0.132 0.868 31 H 0.149 0.851 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.120 0.880 37 H 0.099 0.901 38 H 0.175 0.825 39 H 0.182 0.818 40 H 0.248 0.752 41 H 0.098 0.902 42 H 0.147 0.853 43 H 0.050 0.950 44 H 0.021 0.979 45 H 0.073 0.927 46 H 0.100 0.900 47 H 0.120 0.880 48 H 0.154 0.846 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.617 -19.119 -5.460 24.678 hybrid contribution -1.543 0.145 -0.709 1.704 sum 13.074 -18.974 -6.169 23.854 Atomic orbital electron populations 1.24013 0.96417 1.01876 0.99339 1.23657 0.96408 0.99802 1.01197 1.21380 0.94667 0.94397 0.94503 1.61762 1.17261 1.44721 1.01136 1.22120 0.93328 0.92024 0.98863 1.20047 0.93066 0.93833 1.00066 1.22541 0.85898 0.98862 0.99634 1.21890 1.01515 0.94577 1.05903 1.22168 0.95146 1.02897 1.04485 1.24727 1.00900 0.83524 1.02373 1.84034 1.27456 1.36945 1.60712 1.22086 0.98855 0.93338 0.94502 1.21081 0.78673 0.90697 0.80305 1.90660 1.62820 1.45904 1.45287 1.48088 1.45250 1.13486 1.26449 1.18765 0.91027 0.80211 0.95989 1.21749 1.04451 0.99539 1.31381 0.92962 1.25710 1.01665 0.95208 0.96303 1.70033 1.39391 1.04476 1.42764 0.85551 0.79829 0.78062 0.78480 1.19146 1.20015 1.21207 1.21481 0.99091 0.90555 0.89895 1.19851 1.02990 0.92675 0.92439 1.29179 0.91657 0.93321 0.92982 1.81272 1.10422 1.13029 1.12015 0.90660 0.86754 0.85078 0.92802 0.88765 0.89882 0.92479 0.87969 0.90068 0.82466 0.81775 0.75197 0.90182 0.85311 0.94979 0.97894 0.92681 0.89967 0.88009 0.84589 0.86174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.91 14.32 67.78 0.97 -2.93 16 2 C -0.19 -3.81 7.54 25.65 0.19 -3.61 16 3 C 0.08 1.94 5.27 85.56 0.45 2.39 16 4 N -0.53 -12.53 4.29 -905.39 -3.89 -16.42 16 5 C 0.06 1.10 4.73 86.30 0.41 1.51 16 6 C -0.03 -0.56 5.67 29.85 0.17 -0.39 16 7 C -0.02 -0.35 6.58 24.83 0.16 -0.18 16 8 C -0.22 -3.60 10.81 22.19 0.24 -3.36 16 9 C -0.23 -3.29 10.91 22.19 0.24 -3.05 16 10 C -0.05 -0.68 12.09 66.97 0.81 0.13 16 11 O -0.19 -3.80 10.65 -2.46 -0.03 -3.83 16 12 C 0.04 1.01 4.06 85.56 0.35 1.36 16 13 C 0.50 17.98 7.26 87.66 0.64 18.61 16 14 O -0.57 -26.64 14.78 -3.02 -0.04 -26.69 16 15 N -0.60 -21.30 2.46 -826.15 -2.03 -23.32 16 16 C 0.26 12.55 5.16 85.63 0.44 12.99 16 17 C -0.53 -28.52 9.39 25.60 0.24 -28.28 16 18 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 19 C 0.01 0.55 5.46 84.66 0.46 1.01 16 20 N -0.93 -53.80 13.29 21.45 0.28 -53.52 16 21 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 24 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 25 C 0.11 2.78 5.19 86.38 0.45 3.23 16 26 C -0.04 -0.69 6.03 28.79 0.17 -0.52 16 27 C 0.25 5.30 15.44 89.44 1.38 6.68 16 28 N -0.49 -13.45 18.54 20.01 0.37 -13.08 16 29 H 0.07 2.07 7.84 -2.91 -0.02 2.04 16 30 H 0.11 2.01 8.06 -2.91 -0.02 1.99 16 31 H 0.13 2.00 6.66 -2.91 -0.02 1.98 16 32 H 0.05 1.83 6.28 -2.39 -0.02 1.81 16 33 H 0.09 2.08 6.50 -2.39 -0.02 2.06 16 34 H 0.08 1.37 7.85 -2.38 -0.02 1.35 16 35 H 0.06 0.85 6.12 -2.39 -0.01 0.83 16 36 H 0.10 1.58 6.57 -2.39 -0.02 1.56 16 37 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 39 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 40 H 0.23 1.38 8.06 -2.91 -0.02 1.36 16 41 H 0.08 1.66 5.85 -2.39 -0.01 1.65 16 42 H 0.13 2.17 7.05 -2.39 -0.02 2.16 16 43 H 0.03 1.53 8.07 -2.39 -0.02 1.52 16 44 H 0.00 0.17 7.42 -2.39 -0.02 0.15 16 45 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 46 H 0.08 2.22 8.07 -2.39 -0.02 2.20 16 47 H 0.10 1.91 6.29 -2.39 -0.02 1.90 16 48 H 0.14 1.72 7.39 -2.39 -0.02 1.70 16 49 H 0.12 2.23 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -75.68 413.34 5.43 -70.25 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.95 Total: 15.37 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 7.78 Total: 5.58 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -5.26 Total: -106.34 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.07 Total: -30.51 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -75.68 5.43 -70.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272238979.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.028 kcal (2) G-P(sol) polarization free energy of solvation -75.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds