Wall clock time and date at job start Wed Apr 1 2020 03:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46792 * 2 1 4 4 N 1.46501 * 109.46773 * 179.97438 * 3 2 1 5 5 C 1.36119 * 120.00084 * 269.67853 * 4 3 2 6 6 H 1.08000 * 119.99693 * 133.44343 * 5 4 3 7 7 C 1.39586 * 120.00340 * 313.44675 * 5 4 3 8 8 N 1.31014 * 119.99793 * 168.46592 * 7 5 4 9 9 Si 1.86791 * 119.99976 * 348.47110 * 7 5 4 10 10 H 1.48504 * 109.47586 * 91.21851 * 9 7 5 11 11 H 1.48504 * 109.47434 * 211.22194 * 9 7 5 12 12 H 1.48505 * 109.47118 * 331.22323 * 9 7 5 13 13 C 1.34776 * 120.00382 * 89.68543 * 4 3 2 14 14 O 1.21506 * 119.99623 * 4.75852 * 13 4 3 15 15 C 1.48821 * 120.00518 * 184.76093 * 13 4 3 16 16 O 1.21440 * 120.00101 * 5.70400 * 15 13 4 17 17 N 1.34774 * 120.00195 * 185.70506 * 15 13 4 18 18 C 1.47082 * 120.88205 * 178.24104 * 17 15 13 19 19 C 1.53245 * 108.52355 * 231.20588 * 18 17 15 20 20 N 1.46896 * 109.34021 * 306.17316 * 19 18 17 21 21 C 1.39671 * 111.00205 * 187.25285 * 20 19 18 22 22 C 1.38910 * 120.07990 * 179.97438 * 21 20 19 23 23 C 1.38097 * 119.92961 * 180.02562 * 22 21 20 24 24 C 1.38293 * 120.07089 * 0.02562 * 23 22 21 25 25 C 1.38285 * 120.15221 * 359.97438 * 24 23 22 26 26 C 1.38102 * 120.07119 * 0.02562 * 25 24 23 27 27 C 1.46901 * 111.27155 * 63.10101 * 20 19 18 28 28 C 1.47081 * 120.88255 * 358.26845 * 17 15 13 29 29 H 1.09000 * 109.47874 * 299.99879 * 1 2 3 30 30 H 1.09003 * 109.47420 * 60.00302 * 1 2 3 31 31 H 1.09011 * 109.47042 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47053 * 239.99709 * 2 1 3 33 33 H 1.08994 * 109.46872 * 119.99913 * 2 1 3 34 34 H 1.08999 * 109.47559 * 60.00019 * 3 2 1 35 35 H 1.08994 * 109.47341 * 299.99626 * 3 2 1 36 36 H 0.97000 * 119.99405 * 179.97438 * 8 7 5 37 37 H 1.09011 * 109.62848 * 111.49823 * 18 17 15 38 38 H 1.08994 * 109.63168 * 350.92005 * 18 17 15 39 39 H 1.09003 * 109.49346 * 186.20948 * 19 18 17 40 40 H 1.09001 * 109.51077 * 66.14432 * 19 18 17 41 41 H 1.08000 * 120.03124 * 0.02562 * 22 21 20 42 42 H 1.08002 * 119.96746 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.91907 * 179.71939 * 24 23 22 44 44 H 1.08001 * 119.96449 * 179.97438 * 25 24 23 45 45 H 1.08001 * 120.03168 * 180.02562 * 26 25 24 46 46 H 1.09001 * 109.49352 * 56.85293 * 27 20 19 47 47 H 1.08998 * 109.49191 * 176.93611 * 27 20 19 48 48 H 1.09001 * 109.62668 * 248.50155 * 28 17 15 49 49 H 1.09002 * 109.62592 * 9.07758 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1850 1.4493 1.1797 6 1 5.0119 0.7710 1.3300 7 6 3.8137 2.3328 2.1946 8 7 4.3089 2.1919 3.3993 9 14 2.6106 3.7157 1.8351 10 1 1.2267 3.2516 2.1087 11 1 2.9224 4.8808 2.7015 12 1 2.7261 4.1141 0.4092 13 6 4.1793 1.4359 -1.1662 14 8 3.5754 1.5173 -2.2174 15 6 5.6637 1.3289 -1.1673 16 8 6.2598 1.1435 -0.1256 17 7 6.3464 1.4378 -2.3242 18 6 7.8157 1.3735 -2.3426 19 6 8.3463 2.5849 -3.1168 20 7 7.7100 2.6335 -4.4399 21 6 8.2858 3.6261 -5.2361 22 6 7.8253 3.8352 -6.5298 23 6 8.3972 4.8171 -7.3146 24 6 9.4278 5.5916 -6.8139 25 6 9.8887 5.3861 -5.5264 26 6 9.3212 4.4058 -4.7364 27 6 6.2581 2.8261 -4.3263 28 6 5.6420 1.6247 -3.6017 29 1 -0.3635 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0278 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 4.0512 2.8061 4.1045 37 1 8.1359 0.4553 -2.8353 38 1 8.1961 1.3962 -1.3215 39 1 9.4262 2.4961 -3.2355 40 1 8.1146 3.4977 -2.5680 41 1 7.0207 3.2304 -6.9215 42 1 8.0398 4.9800 -8.3207 43 1 9.8763 6.3558 -7.4313 44 1 10.6940 5.9924 -5.1386 45 1 9.6815 4.2462 -3.7308 46 1 6.0550 3.7353 -3.7604 47 1 5.8237 2.9123 -5.3222 48 1 5.7532 0.7306 -4.2153 49 1 4.5852 1.8134 -3.4129 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291565097.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:40 Heat of formation + Delta-G solvation = 13.306400 kcal Electronic energy + Delta-G solvation = -31099.009763 eV Core-core repulsion = 27028.051471 eV Total energy + Delta-G solvation = -4070.958293 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.60159 -39.74381 -38.12109 -37.00840 -35.85455 -34.15053 -33.03395 -31.79082 -31.69423 -30.51940 -29.89946 -27.02493 -26.30870 -25.15634 -24.47581 -22.92049 -22.04779 -21.68070 -21.17619 -20.08036 -19.05004 -17.96675 -17.37149 -16.25175 -16.04089 -15.83383 -15.56274 -15.24111 -15.08373 -14.96625 -14.72373 -14.31152 -14.26413 -14.02681 -13.80059 -13.62186 -13.48140 -13.31934 -12.91858 -12.53828 -12.49932 -12.14965 -11.97397 -11.77911 -11.76956 -11.64671 -11.57357 -11.20064 -11.18675 -11.11739 -11.02335 -10.89628 -10.66733 -10.30474 -9.91288 -9.87777 -9.50182 -9.19906 -9.05651 -8.28342 -8.26221 -7.87930 -7.70037 -6.48420 -4.16954 1.27875 1.29511 2.35834 2.99183 3.10699 3.15687 3.18754 3.53942 3.82956 4.02686 4.18075 4.36899 4.70963 4.82182 4.85724 4.92628 4.99792 5.05388 5.19723 5.28983 5.32145 5.42149 5.44163 5.48546 5.49815 5.54530 5.55300 5.68184 5.77768 5.78258 5.90679 5.93072 5.98953 6.10370 6.17768 6.21006 6.23051 6.29458 6.33425 6.43869 6.44125 6.61650 6.65847 6.77745 6.86574 6.97777 7.21849 7.30755 7.76008 7.94816 8.21547 8.73940 8.88986 9.15876 9.43370 10.57981 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015383 B = 0.002917 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.786882 B = 9596.639377 C =10072.457411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C 0.092 3.908 4 N -0.409 5.409 5 C -0.340 4.340 6 H 0.135 0.865 7 C 0.071 3.929 8 N -0.847 5.847 9 Si 0.872 3.128 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.262 1.262 13 C 0.452 3.548 14 O -0.582 6.582 15 C 0.510 3.490 16 O -0.488 6.488 17 N -0.603 5.603 18 C 0.115 3.885 19 C 0.039 3.961 20 N -0.491 5.491 21 C 0.119 3.881 22 C -0.143 4.143 23 C -0.096 4.096 24 C -0.154 4.154 25 C -0.094 4.094 26 C -0.175 4.175 27 C 0.047 3.953 28 C 0.059 3.941 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.277 0.723 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.127 0.873 46 H 0.046 0.954 47 H 0.088 0.912 48 H 0.062 0.938 49 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.400 3.198 -15.501 16.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.030 4.030 4 N -0.126 5.126 5 C -0.468 4.468 6 H 0.152 0.848 7 C -0.138 4.138 8 N -0.482 5.482 9 Si 0.699 3.301 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.186 1.186 13 C 0.239 3.761 14 O -0.471 6.471 15 C 0.295 3.705 16 O -0.360 6.360 17 N -0.341 5.341 18 C -0.008 4.008 19 C -0.089 4.089 20 N -0.205 5.205 21 C 0.021 3.979 22 C -0.164 4.164 23 C -0.115 4.115 24 C -0.174 4.174 25 C -0.112 4.112 26 C -0.196 4.196 27 C -0.079 4.079 28 C -0.063 4.063 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.069 0.931 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.144 0.856 46 H 0.065 0.935 47 H 0.107 0.893 48 H 0.081 0.919 49 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.447 2.668 -15.292 16.147 hybrid contribution -0.382 1.476 0.286 1.551 sum 4.065 4.144 -15.006 16.089 Atomic orbital electron populations 1.21705 0.95963 1.01307 1.01530 1.21744 0.95107 0.97190 1.02819 1.21916 0.81822 0.97410 1.01872 1.43472 1.04406 1.59067 1.05684 1.19844 1.16478 1.21768 0.88672 0.84768 1.25574 0.96539 0.96773 0.94896 1.69484 1.41660 1.36113 1.00917 0.87010 0.80985 0.82390 0.79667 1.19582 1.21116 1.18579 1.19814 0.87735 0.84049 0.84464 1.90090 1.69056 1.57992 1.30004 1.20017 0.89163 0.78361 0.82990 1.90776 1.70155 1.45060 1.30000 1.47978 1.05820 1.73094 1.07178 1.21644 0.80653 0.97027 1.01451 1.22689 0.99373 0.99010 0.87815 1.59112 1.05351 1.42391 1.13692 1.19079 0.95537 0.89769 0.93563 1.20808 1.02412 1.00157 0.92987 1.20995 0.95968 0.95160 0.99339 1.21035 0.98799 1.01252 0.96264 1.20994 0.99026 0.97082 0.94133 1.21364 1.00315 0.97249 1.00636 1.22748 0.84504 0.99171 1.01478 1.23434 1.03419 0.96313 0.83118 0.92875 0.92891 0.92800 0.91901 0.90948 0.91141 0.90657 0.91187 0.91076 0.88282 0.89129 0.93071 0.85737 0.86082 0.86442 0.86243 0.85560 0.93530 0.89329 0.91923 0.81257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.13 -2.36 6.26 -26.73 -0.17 -2.52 16 3 C 0.09 1.93 4.13 -4.04 -0.02 1.91 16 4 N -0.41 -9.78 2.04 -115.59 -0.24 -10.02 16 5 C -0.34 -9.07 8.34 -15.15 -0.13 -9.19 16 6 H 0.14 3.98 6.05 -52.49 -0.32 3.66 16 7 C 0.07 1.90 5.42 -17.40 -0.09 1.81 16 8 N -0.85 -23.58 13.94 55.53 0.77 -22.81 16 9 Si 0.87 20.15 24.90 -169.99 -4.23 15.92 16 10 H -0.27 -5.82 6.69 56.52 0.38 -5.44 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 12 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 13 C 0.45 10.37 7.60 -11.88 -0.09 10.28 16 14 O -0.58 -12.77 12.58 5.36 0.07 -12.71 16 15 C 0.51 11.27 7.64 -11.88 -0.09 11.17 16 16 O -0.49 -12.13 12.92 5.42 0.07 -12.06 16 17 N -0.60 -10.86 3.01 -173.20 -0.52 -11.38 16 18 C 0.12 1.74 6.59 -3.60 -0.02 1.72 16 19 C 0.04 0.51 4.30 -3.70 -0.02 0.49 16 20 N -0.49 -6.49 4.67 -170.82 -0.80 -7.29 16 21 C 0.12 1.48 5.64 -83.79 -0.47 1.01 16 22 C -0.14 -1.61 9.15 -39.38 -0.36 -1.97 16 23 C -0.10 -0.94 10.04 -39.61 -0.40 -1.34 16 24 C -0.15 -1.49 10.04 -39.54 -0.40 -1.88 16 25 C -0.09 -0.96 10.04 -39.61 -0.40 -1.35 16 26 C -0.17 -2.02 8.83 -39.38 -0.35 -2.37 16 27 C 0.05 0.64 5.43 -3.70 -0.02 0.62 16 28 C 0.06 0.93 6.37 -3.60 -0.02 0.91 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.07 1.52 3.59 -51.93 -0.19 1.33 16 35 H 0.08 1.52 7.37 -51.93 -0.38 1.14 16 36 H 0.28 7.15 8.30 -40.82 -0.34 6.81 16 37 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 38 H 0.10 1.59 7.07 -51.93 -0.37 1.22 16 39 H 0.09 1.00 6.89 -51.93 -0.36 0.64 16 40 H 0.05 0.72 7.82 -51.93 -0.41 0.32 16 41 H 0.12 1.27 7.15 -52.49 -0.38 0.90 16 42 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 45 H 0.13 1.36 5.81 -52.49 -0.30 1.05 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.09 1.05 6.66 -51.93 -0.35 0.70 16 48 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.17 3.06 3.88 -56.73 -0.22 2.84 16 LS Contribution 380.57 15.07 5.74 5.74 Total: -1.00 -29.52 380.57 -8.89 -38.41 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -7.07 Total: 8.68 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: -2.67 Total: 7.52 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -0.78 Total: -51.49 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: 0.14 Total: -24.77 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.23 Total: 15.92 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.52 -8.89 -38.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291565097.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.715 kcal (2) G-P(sol) polarization free energy of solvation -29.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds