Wall clock time and date at job start Wed Apr 1 2020 03:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46792 * 2 1 4 4 N 1.46501 * 109.46773 * 179.97438 * 3 2 1 5 5 C 1.36119 * 120.00084 * 269.67853 * 4 3 2 6 6 H 1.08000 * 119.99693 * 133.44343 * 5 4 3 7 7 C 1.39586 * 120.00340 * 313.44675 * 5 4 3 8 8 N 1.31014 * 119.99793 * 168.46592 * 7 5 4 9 9 Si 1.86791 * 119.99976 * 348.47110 * 7 5 4 10 10 H 1.48504 * 109.47586 * 91.21851 * 9 7 5 11 11 H 1.48504 * 109.47434 * 211.22194 * 9 7 5 12 12 H 1.48505 * 109.47118 * 331.22323 * 9 7 5 13 13 C 1.34776 * 120.00382 * 89.68543 * 4 3 2 14 14 O 1.21506 * 119.99623 * 4.75852 * 13 4 3 15 15 C 1.48821 * 120.00518 * 184.76093 * 13 4 3 16 16 O 1.21440 * 120.00101 * 5.70400 * 15 13 4 17 17 N 1.34774 * 120.00195 * 185.70506 * 15 13 4 18 18 C 1.47082 * 120.88205 * 178.24104 * 17 15 13 19 19 C 1.53245 * 108.52355 * 231.20588 * 18 17 15 20 20 N 1.46896 * 109.34021 * 306.17316 * 19 18 17 21 21 C 1.39671 * 111.00205 * 187.25285 * 20 19 18 22 22 C 1.38910 * 120.07990 * 179.97438 * 21 20 19 23 23 C 1.38097 * 119.92961 * 180.02562 * 22 21 20 24 24 C 1.38293 * 120.07089 * 0.02562 * 23 22 21 25 25 C 1.38285 * 120.15221 * 359.97438 * 24 23 22 26 26 C 1.38102 * 120.07119 * 0.02562 * 25 24 23 27 27 C 1.46901 * 111.27155 * 63.10101 * 20 19 18 28 28 C 1.47081 * 120.88255 * 358.26845 * 17 15 13 29 29 H 1.09000 * 109.47874 * 299.99879 * 1 2 3 30 30 H 1.09003 * 109.47420 * 60.00302 * 1 2 3 31 31 H 1.09011 * 109.47042 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47053 * 239.99709 * 2 1 3 33 33 H 1.08994 * 109.46872 * 119.99913 * 2 1 3 34 34 H 1.08999 * 109.47559 * 60.00019 * 3 2 1 35 35 H 1.08994 * 109.47341 * 299.99626 * 3 2 1 36 36 H 0.97000 * 119.99405 * 179.97438 * 8 7 5 37 37 H 1.09011 * 109.62848 * 111.49823 * 18 17 15 38 38 H 1.08994 * 109.63168 * 350.92005 * 18 17 15 39 39 H 1.09003 * 109.49346 * 186.20948 * 19 18 17 40 40 H 1.09001 * 109.51077 * 66.14432 * 19 18 17 41 41 H 1.08000 * 120.03124 * 0.02562 * 22 21 20 42 42 H 1.08002 * 119.96746 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.91907 * 179.71939 * 24 23 22 44 44 H 1.08001 * 119.96449 * 179.97438 * 25 24 23 45 45 H 1.08001 * 120.03168 * 180.02562 * 26 25 24 46 46 H 1.09001 * 109.49352 * 56.85293 * 27 20 19 47 47 H 1.08998 * 109.49191 * 176.93611 * 27 20 19 48 48 H 1.09001 * 109.62668 * 248.50155 * 28 17 15 49 49 H 1.09002 * 109.62592 * 9.07758 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1850 1.4493 1.1797 6 1 5.0119 0.7710 1.3300 7 6 3.8137 2.3328 2.1946 8 7 4.3089 2.1919 3.3993 9 14 2.6106 3.7157 1.8351 10 1 1.2267 3.2516 2.1087 11 1 2.9224 4.8808 2.7015 12 1 2.7261 4.1141 0.4092 13 6 4.1793 1.4359 -1.1662 14 8 3.5754 1.5173 -2.2174 15 6 5.6637 1.3289 -1.1673 16 8 6.2598 1.1435 -0.1256 17 7 6.3464 1.4378 -2.3242 18 6 7.8157 1.3735 -2.3426 19 6 8.3463 2.5849 -3.1168 20 7 7.7100 2.6335 -4.4399 21 6 8.2858 3.6261 -5.2361 22 6 7.8253 3.8352 -6.5298 23 6 8.3972 4.8171 -7.3146 24 6 9.4278 5.5916 -6.8139 25 6 9.8887 5.3861 -5.5264 26 6 9.3212 4.4058 -4.7364 27 6 6.2581 2.8261 -4.3263 28 6 5.6420 1.6247 -3.6017 29 1 -0.3635 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0278 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 4.0512 2.8061 4.1045 37 1 8.1359 0.4553 -2.8353 38 1 8.1961 1.3962 -1.3215 39 1 9.4262 2.4961 -3.2355 40 1 8.1146 3.4977 -2.5680 41 1 7.0207 3.2304 -6.9215 42 1 8.0398 4.9800 -8.3207 43 1 9.8763 6.3558 -7.4313 44 1 10.6940 5.9924 -5.1386 45 1 9.6815 4.2462 -3.7308 46 1 6.0550 3.7353 -3.7604 47 1 5.8237 2.9123 -5.3222 48 1 5.7532 0.7306 -4.2153 49 1 4.5852 1.8134 -3.4129 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291565097.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:39 Heat of formation + Delta-G solvation = -4.497511 kcal Electronic energy + Delta-G solvation = -31099.781799 eV Core-core repulsion = 27028.051471 eV Total energy + Delta-G solvation = -4071.730328 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.01532 -41.04948 -39.59191 -38.42143 -37.52037 -35.49928 -34.75023 -33.54768 -32.78088 -31.48097 -30.94507 -28.43175 -27.73385 -26.98412 -25.64509 -24.34221 -23.13902 -22.74841 -22.43688 -21.51290 -20.66845 -19.47838 -18.57335 -17.96394 -17.70385 -17.15196 -16.82127 -16.64986 -16.60082 -16.29737 -15.89188 -15.79632 -15.49774 -15.33528 -15.04077 -14.93178 -14.86333 -14.42688 -14.35362 -14.25360 -13.88324 -13.46436 -13.36695 -13.30145 -13.13756 -12.92854 -12.72535 -12.64816 -12.51099 -12.37875 -12.31185 -12.20913 -11.97902 -11.79224 -11.57183 -11.29082 -11.06051 -10.82306 -10.08148 -9.85095 -9.75414 -9.51987 -8.82605 -8.49233 -6.23119 0.45221 0.49860 0.56714 1.16087 1.28264 1.35000 1.56723 2.11277 2.34892 2.55193 2.76257 2.93178 2.97264 3.56998 3.77924 3.85959 3.88193 3.97866 4.07767 4.11051 4.13847 4.23748 4.29977 4.30414 4.37463 4.48453 4.54549 4.55129 4.57881 4.60011 4.66663 4.73648 4.82323 4.86690 4.93438 5.03687 5.12425 5.12612 5.23309 5.27881 5.31578 5.44921 5.51572 5.53160 5.66660 5.82361 5.95251 6.06550 6.16249 6.25319 6.33417 6.78523 7.01344 7.24360 7.51281 8.61017 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015383 B = 0.002917 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.786882 B = 9596.639377 C =10072.457411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C 0.087 3.913 4 N -0.424 5.424 5 C -0.341 4.341 6 H 0.094 0.906 7 C 0.029 3.971 8 N -0.893 5.893 9 Si 0.928 3.072 10 H -0.240 1.240 11 H -0.283 1.283 12 H -0.267 1.267 13 C 0.453 3.547 14 O -0.571 6.571 15 C 0.502 3.498 16 O -0.527 6.527 17 N -0.594 5.594 18 C 0.113 3.887 19 C 0.048 3.952 20 N -0.490 5.490 21 C 0.094 3.906 22 C -0.152 4.152 23 C -0.099 4.099 24 C -0.154 4.154 25 C -0.101 4.101 26 C -0.188 4.188 27 C 0.055 3.945 28 C 0.060 3.940 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.282 0.718 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.114 0.886 40 H 0.037 0.963 41 H 0.133 0.867 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.128 0.872 46 H 0.029 0.971 47 H 0.112 0.888 48 H 0.079 0.921 49 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.780 4.400 -18.600 19.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.163 4.163 3 C -0.034 4.034 4 N -0.143 5.143 5 C -0.469 4.469 6 H 0.111 0.889 7 C -0.177 4.177 8 N -0.529 5.529 9 Si 0.752 3.248 10 H -0.165 1.165 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.239 3.761 14 O -0.459 6.459 15 C 0.286 3.714 16 O -0.402 6.402 17 N -0.330 5.330 18 C -0.009 4.009 19 C -0.080 4.080 20 N -0.205 5.205 21 C -0.003 4.003 22 C -0.172 4.172 23 C -0.117 4.117 24 C -0.172 4.172 25 C -0.120 4.120 26 C -0.209 4.209 27 C -0.071 4.071 28 C -0.061 4.061 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.132 0.868 40 H 0.055 0.945 41 H 0.150 0.850 42 H 0.164 0.836 43 H 0.160 0.840 44 H 0.157 0.843 45 H 0.145 0.855 46 H 0.047 0.953 47 H 0.130 0.870 48 H 0.097 0.903 49 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.823 3.872 -18.458 19.243 hybrid contribution -0.043 1.094 1.004 1.486 sum 3.780 4.966 -17.454 18.536 Atomic orbital electron populations 1.21677 0.92700 1.03040 1.02400 1.21699 0.97861 0.95035 1.01729 1.22098 0.80015 0.99326 1.01985 1.43558 1.05621 1.60155 1.04952 1.19397 1.16086 1.21527 0.89916 0.88885 1.26182 0.98376 0.98665 0.94442 1.69580 1.43844 1.37541 1.01932 0.86135 0.80400 0.79364 0.78919 1.16521 1.20969 1.19118 1.20105 0.88396 0.83074 0.84480 1.90134 1.69391 1.56937 1.29448 1.20072 0.89109 0.78479 0.83709 1.90773 1.70596 1.47300 1.31570 1.48109 1.07219 1.70900 1.06759 1.21837 0.78652 0.99030 1.01415 1.22600 1.00618 0.97095 0.87658 1.59139 1.04695 1.43333 1.13381 1.19208 0.96474 0.90526 0.94092 1.21017 1.02785 1.00698 0.92682 1.21341 0.95667 0.94388 1.00317 1.21419 0.98295 1.01309 0.96203 1.21298 0.99437 0.96807 0.94440 1.21520 1.00452 0.97803 1.01100 1.22629 0.85435 0.96980 1.02030 1.23383 1.02328 0.98106 0.82278 0.92505 0.91488 0.90715 0.92298 0.92755 0.91578 0.89681 0.90778 0.89255 0.89679 0.86765 0.94460 0.84955 0.83602 0.83965 0.84341 0.85460 0.95300 0.86963 0.90298 0.83052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 9.91 71.98 0.71 -3.01 16 2 C -0.12 -4.44 6.26 30.59 0.19 -4.25 16 3 C 0.09 3.60 4.13 86.38 0.36 3.96 16 4 N -0.42 -20.74 2.04 -637.90 -1.30 -22.04 16 5 C -0.34 -19.04 8.34 84.35 0.70 -18.33 16 6 H 0.09 5.93 6.05 -2.91 -0.02 5.92 16 7 C 0.03 1.57 5.42 85.14 0.46 2.03 16 8 N -0.89 -51.67 13.94 21.77 0.30 -51.37 16 9 Si 0.93 41.76 24.90 68.60 1.71 43.47 16 10 H -0.24 -9.64 6.69 99.48 0.67 -8.98 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 C 0.45 21.15 7.60 87.08 0.66 21.81 16 14 O -0.57 -24.87 12.58 -3.73 -0.05 -24.91 16 15 C 0.50 22.97 7.64 87.08 0.66 23.63 16 16 O -0.53 -27.77 12.92 -3.53 -0.05 -27.82 16 17 N -0.59 -21.56 3.01 -820.20 -2.47 -24.03 16 18 C 0.11 3.40 6.59 86.35 0.57 3.97 16 19 C 0.05 1.22 4.30 86.39 0.37 1.59 16 20 N -0.49 -12.25 4.67 -694.34 -3.24 -15.49 16 21 C 0.09 2.19 5.64 38.21 0.22 2.40 16 22 C -0.15 -3.04 9.15 22.40 0.20 -2.83 16 23 C -0.10 -1.63 10.04 22.25 0.22 -1.41 16 24 C -0.15 -2.46 10.04 22.29 0.22 -2.24 16 25 C -0.10 -1.82 10.04 22.25 0.22 -1.60 16 26 C -0.19 -4.05 8.83 22.40 0.20 -3.85 16 27 C 0.06 1.45 5.43 86.38 0.47 1.92 16 28 C 0.06 1.85 6.37 86.35 0.55 2.40 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.05 2.10 8.14 -2.39 -0.02 2.09 16 34 H 0.07 2.78 3.59 -2.39 -0.01 2.77 16 35 H 0.08 3.31 7.37 -2.39 -0.02 3.30 16 36 H 0.28 15.01 8.30 -92.71 -0.77 14.24 16 37 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 38 H 0.08 2.83 7.07 -2.39 -0.02 2.82 16 39 H 0.11 2.38 6.89 -2.39 -0.02 2.36 16 40 H 0.04 1.06 7.82 -2.39 -0.02 1.04 16 41 H 0.13 2.35 7.15 -2.91 -0.02 2.33 16 42 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 43 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 44 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 45 H 0.13 2.60 5.81 -2.91 -0.02 2.58 16 46 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.11 2.41 6.66 -2.39 -0.02 2.40 16 48 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.15 5.35 3.88 -78.36 -0.30 5.05 16 Total: -1.00 -66.73 380.57 2.54 -64.20 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: 0.63 Total: 31.80 kcal Atomic # 6 Polarization: 19.19 SS G_CDS: 7.00 Total: 26.19 kcal Atomic # 7 Polarization: -106.22 SS G_CDS: -6.71 Total: -112.93 kcal Atomic # 8 Polarization: -52.64 SS G_CDS: -0.09 Total: -52.73 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 1.71 Total: 43.47 kcal Total: -66.73 2.54 -64.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291565097.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.701 kcal (2) G-P(sol) polarization free energy of solvation -66.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds