Wall clock time and date at job start Wed Apr 1 2020 02:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47687 * 2 1 4 4 H 1.09005 * 109.46841 * 54.99497 * 3 2 1 5 5 C 1.50697 * 109.47635 * 174.99540 * 3 2 1 6 6 H 1.08003 * 119.99609 * 119.99340 * 5 3 2 7 7 C 1.37873 * 120.00152 * 300.00574 * 5 3 2 8 8 N 1.31520 * 119.99980 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00171 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46855 * 59.99760 * 9 7 5 11 11 H 1.48504 * 109.47150 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47002 * 299.99988 * 9 7 5 13 13 N 1.46494 * 109.46823 * 295.00294 * 3 2 1 14 14 C 1.34776 * 120.00863 * 84.99526 * 13 3 2 15 15 O 1.21352 * 119.99157 * 0.02562 * 14 13 3 16 16 C 1.49445 * 120.00484 * 180.02562 * 14 13 3 17 17 O 1.21352 * 120.00129 * 6.48024 * 16 14 13 18 18 N 1.34783 * 119.99744 * 186.48779 * 16 14 13 19 19 C 1.47079 * 120.87611 * 178.47003 * 18 16 14 20 20 C 1.53244 * 108.52167 * 231.20276 * 19 18 16 21 21 N 1.46895 * 109.33727 * 306.17621 * 20 19 18 22 22 C 1.39675 * 110.99659 * 187.25345 * 21 20 19 23 23 C 1.38910 * 120.07506 * 179.97438 * 22 21 20 24 24 C 1.38109 * 119.92910 * 180.02562 * 23 22 21 25 25 C 1.38285 * 120.07022 * 359.97438 * 24 23 22 26 26 C 1.38286 * 120.15021 * 0.02562 * 25 24 23 27 27 C 1.38106 * 120.07864 * 0.02562 * 26 25 24 28 28 C 1.46894 * 111.27353 * 63.10240 * 21 20 19 29 29 C 1.47072 * 120.88304 * 358.49314 * 18 16 14 30 30 H 1.09003 * 109.47409 * 300.00304 * 1 2 3 31 31 H 1.09003 * 109.46598 * 59.99881 * 1 2 3 32 32 H 1.09001 * 109.47233 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47233 * 239.99176 * 2 1 3 34 34 H 1.09010 * 109.46835 * 119.99853 * 2 1 3 35 35 H 0.97000 * 120.00053 * 180.02562 * 8 7 5 36 36 H 0.97005 * 119.99911 * 264.99395 * 13 3 2 37 37 H 1.09006 * 109.62881 * 111.49774 * 19 18 16 38 38 H 1.08993 * 109.79324 * 351.01148 * 19 18 16 39 39 H 1.08999 * 109.48950 * 186.21325 * 20 19 18 40 40 H 1.08996 * 109.51339 * 66.14786 * 20 19 18 41 41 H 1.08002 * 120.03680 * 359.97438 * 23 22 21 42 42 H 1.07994 * 119.96621 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.92661 * 179.72437 * 25 24 23 44 44 H 1.08009 * 119.96446 * 179.97438 * 26 25 24 45 45 H 1.07994 * 120.03751 * 180.02562 * 27 26 25 46 46 H 1.09005 * 109.49364 * 56.85354 * 28 21 20 47 47 H 1.09005 * 109.49742 * 176.93245 * 28 21 20 48 48 H 1.08997 * 109.62814 * 248.50484 * 29 18 16 49 49 H 1.09004 * 109.62953 * 9.08289 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4061 0.3373 2.1734 9 14 6.0050 0.8799 1.3813 10 1 6.5005 2.2798 1.3810 11 1 6.3977 0.2165 2.6506 12 1 6.5967 0.1451 0.2345 13 7 1.6525 2.0974 -1.2517 14 6 0.4353 2.6644 -1.3670 15 8 -0.3395 2.6327 -0.4336 16 6 0.0398 3.3320 -2.6442 17 8 0.7646 3.2626 -3.6150 18 7 -1.1220 4.0113 -2.7179 19 6 -1.5145 4.7036 -3.9548 20 6 -1.8881 6.1484 -3.6064 21 7 -2.9050 6.1458 -2.5464 22 6 -3.3902 7.4350 -2.3152 23 6 -4.3636 7.6493 -1.3476 24 6 -4.8416 8.9252 -1.1218 25 6 -4.3519 9.9889 -1.8574 26 6 -3.3829 9.7791 -2.8214 27 6 -2.9013 8.5056 -3.0531 28 6 -2.3838 5.5497 -1.3092 29 6 -2.0305 4.0805 -1.5634 30 1 -0.3634 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5140 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 3.8291 -0.0606 2.9503 36 1 2.2721 2.1231 -1.9978 37 1 -2.3732 4.2005 -4.3993 38 1 -0.6830 4.7002 -4.6594 39 1 -2.2863 6.6446 -4.4915 40 1 -1.0021 6.6800 -3.2592 41 1 -4.7468 6.8190 -0.7730 42 1 -5.5986 9.0925 -0.3700 43 1 -4.7305 10.9850 -1.6820 44 1 -3.0028 10.6119 -3.3945 45 1 -2.1442 8.3425 -3.8058 46 1 -1.4907 6.0892 -0.9937 47 1 -3.1416 5.6118 -0.5281 48 1 -2.9388 3.5174 -1.7780 49 1 -1.5379 3.6649 -0.6843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291594634.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:50 Heat of formation + Delta-G solvation = -25.586062 kcal Electronic energy + Delta-G solvation = -30569.046912 eV Core-core repulsion = 26496.402116 eV Total energy + Delta-G solvation = -4072.644796 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.13707 -41.04278 -39.73171 -38.52458 -37.24033 -35.71571 -34.31301 -32.83071 -32.79117 -31.49967 -31.01628 -29.22217 -28.02609 -26.11182 -25.32042 -24.49516 -23.16365 -22.68509 -22.04446 -21.38855 -20.80067 -19.30626 -18.60697 -17.95685 -17.82944 -17.39413 -16.92227 -16.65343 -16.56095 -16.32204 -15.88054 -15.82186 -15.62585 -15.26080 -15.07396 -14.85974 -14.60961 -14.40177 -14.29079 -13.84563 -13.50552 -13.48569 -13.33194 -13.19523 -13.00949 -12.86143 -12.67283 -12.66246 -12.41461 -12.27750 -12.16528 -12.13650 -11.99450 -11.78068 -11.56851 -11.10910 -10.85844 -10.56182 -10.12731 -9.94713 -9.84260 -9.75139 -8.83017 -8.18547 -6.35352 0.39202 0.44886 0.49933 1.33281 1.46170 1.46373 1.54581 2.17843 2.37022 2.50241 2.70178 2.95847 3.11174 3.42142 3.70929 3.81827 3.85779 4.07285 4.11496 4.20873 4.26094 4.30076 4.45053 4.50309 4.54512 4.56639 4.57610 4.63090 4.69482 4.73078 4.81204 4.84505 4.96589 5.03841 5.09901 5.17820 5.25078 5.29420 5.39715 5.51689 5.53102 5.58112 5.67205 5.72197 5.78927 5.82405 5.95093 5.98395 6.13039 6.32065 6.47272 6.67678 6.82654 7.13699 7.36719 8.86208 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017061 B = 0.002325 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.747330 B =12040.114121 C =12243.630848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.124 4.124 3 C 0.277 3.723 4 H 0.019 0.981 5 C -0.555 4.555 6 H 0.066 0.934 7 C 0.023 3.977 8 N -0.908 5.908 9 Si 0.966 3.034 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.268 1.268 13 N -0.670 5.670 14 C 0.495 3.505 15 O -0.530 6.530 16 C 0.511 3.489 17 O -0.546 6.546 18 N -0.580 5.580 19 C 0.110 3.890 20 C 0.044 3.956 21 N -0.491 5.491 22 C 0.094 3.906 23 C -0.153 4.153 24 C -0.101 4.101 25 C -0.154 4.154 26 C -0.101 4.101 27 C -0.184 4.184 28 C 0.053 3.947 29 C 0.059 3.941 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.047 0.953 33 H 0.036 0.964 34 H 0.079 0.921 35 H 0.267 0.733 36 H 0.407 0.593 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.043 0.957 41 H 0.130 0.870 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.134 0.866 46 H 0.034 0.966 47 H 0.108 0.892 48 H 0.085 0.915 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.556 15.537 -9.753 24.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.163 4.163 3 C 0.175 3.825 4 H 0.037 0.963 5 C -0.593 4.593 6 H 0.084 0.916 7 C -0.178 4.178 8 N -0.546 5.546 9 Si 0.791 3.209 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.193 1.193 13 N -0.318 5.318 14 C 0.277 3.723 15 O -0.411 6.411 16 C 0.294 3.706 17 O -0.424 6.424 18 N -0.313 5.313 19 C -0.012 4.012 20 C -0.084 4.084 21 N -0.207 5.207 22 C -0.003 4.003 23 C -0.173 4.173 24 C -0.120 4.120 25 C -0.173 4.173 26 C -0.120 4.120 27 C -0.205 4.205 28 C -0.072 4.072 29 C -0.062 4.062 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.242 0.758 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.135 0.865 40 H 0.062 0.938 41 H 0.148 0.852 42 H 0.160 0.840 43 H 0.158 0.842 44 H 0.158 0.842 45 H 0.151 0.849 46 H 0.052 0.948 47 H 0.126 0.874 48 H 0.103 0.897 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.029 14.983 -9.583 23.943 hybrid contribution 1.761 0.226 0.140 1.781 sum -14.268 15.209 -9.443 22.892 Atomic orbital electron populations 1.21697 0.96369 0.99656 1.00508 1.21822 0.94313 0.98566 1.01553 1.18635 0.93969 0.89578 0.80325 0.96330 1.21488 0.91367 1.39608 1.06859 0.91583 1.25646 1.03020 0.94184 0.94916 1.69996 1.36999 1.37894 1.09711 0.85488 0.79417 0.78413 0.77580 1.19820 1.20814 1.19320 1.46294 1.14369 1.52872 1.18315 1.20210 0.83415 0.80519 0.88179 1.90294 1.50082 1.59530 1.41196 1.20170 0.82055 0.80133 0.88261 1.90703 1.52437 1.61144 1.38153 1.48111 1.18394 1.49181 1.15597 1.21997 1.01853 0.91482 0.85841 1.22665 0.93268 0.96365 0.96067 1.59131 1.35093 1.17800 1.08676 1.19162 0.96521 0.87851 0.96749 1.21016 0.98237 0.98383 0.99671 1.21326 0.99373 0.92000 0.99255 1.21414 0.98621 0.99996 0.97250 1.21314 0.96411 0.96694 0.97576 1.21523 1.02656 0.92711 1.03567 1.22614 0.99329 0.94300 0.91005 1.23382 0.94745 0.96437 0.91637 0.94167 0.94187 0.93411 0.94486 0.90286 0.92354 0.75818 0.88839 0.88288 0.86506 0.93823 0.85218 0.83983 0.84188 0.84229 0.84872 0.94791 0.87383 0.89704 0.83443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.20 8.52 71.98 0.61 -4.59 16 2 C -0.12 -5.84 5.45 30.59 0.17 -5.68 16 3 C 0.28 13.67 2.24 44.25 0.10 13.77 16 4 H 0.02 1.06 7.58 -2.38 -0.02 1.04 16 5 C -0.56 -28.98 8.73 25.60 0.22 -28.76 16 6 H 0.07 3.33 7.74 -2.91 -0.02 3.30 16 7 C 0.02 1.23 5.29 84.65 0.45 1.68 16 8 N -0.91 -49.90 11.29 21.45 0.24 -49.66 16 9 Si 0.97 41.55 29.54 68.60 2.03 43.57 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 13 N -0.67 -28.31 5.01 -447.45 -2.24 -30.55 16 14 C 0.50 19.21 6.37 87.27 0.56 19.77 16 15 O -0.53 -21.32 10.17 -3.25 -0.03 -21.36 16 16 C 0.51 17.38 7.77 87.27 0.68 18.06 16 17 O -0.55 -20.14 15.96 -3.25 -0.05 -20.20 16 18 N -0.58 -15.89 3.01 -819.53 -2.47 -18.35 16 19 C 0.11 2.34 6.59 86.35 0.57 2.91 16 20 C 0.04 0.81 4.30 86.39 0.37 1.18 16 21 N -0.49 -9.90 4.67 -694.36 -3.24 -13.14 16 22 C 0.09 1.85 5.64 38.21 0.22 2.07 16 23 C -0.15 -2.74 9.14 22.40 0.20 -2.54 16 24 C -0.10 -1.53 10.04 22.25 0.22 -1.30 16 25 C -0.15 -2.19 10.04 22.29 0.22 -1.96 16 26 C -0.10 -1.53 10.04 22.25 0.22 -1.30 16 27 C -0.18 -3.22 8.83 22.40 0.20 -3.03 16 28 C 0.05 1.17 5.43 86.38 0.47 1.64 16 29 C 0.06 1.49 6.36 86.35 0.55 2.04 16 30 H 0.04 1.75 7.85 -2.39 -0.02 1.73 16 31 H 0.04 1.61 5.65 -2.39 -0.01 1.59 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.08 4.16 5.95 -2.38 -0.01 4.14 16 35 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 36 H 0.41 16.33 8.03 -92.70 -0.74 15.59 16 37 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.10 2.18 7.08 -2.39 -0.02 2.16 16 39 H 0.12 1.65 6.89 -2.39 -0.02 1.63 16 40 H 0.04 0.89 7.82 -2.39 -0.02 0.87 16 41 H 0.13 2.11 7.15 -2.91 -0.02 2.09 16 42 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 43 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 44 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 45 H 0.13 2.01 5.81 -2.91 -0.02 1.99 16 46 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 47 H 0.11 2.05 6.66 -2.38 -0.02 2.03 16 48 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.15 4.54 3.92 -75.33 -0.30 4.24 16 Total: -1.00 -60.76 383.05 0.21 -60.55 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: -0.05 Total: 35.18 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 6.03 Total: 13.95 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -7.71 Total: -111.70 kcal Atomic # 8 Polarization: -41.47 SS G_CDS: -0.09 Total: -41.55 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Total: -60.76 0.21 -60.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291594634.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.966 kcal (2) G-P(sol) polarization free energy of solvation -60.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds