Wall clock time and date at job start Wed Apr 1 2020 03:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47197 * 2 1 4 4 N 1.46499 * 109.46757 * 119.99901 * 2 1 3 5 5 C 1.34773 * 119.99814 * 155.00146 * 4 2 1 6 6 O 1.21596 * 119.99927 * 0.02562 * 5 4 2 7 7 C 1.47523 * 120.00288 * 179.97438 * 5 4 2 8 8 C 1.39683 * 120.19448 * 1.39159 * 7 5 4 9 9 C 1.37803 * 119.91985 * 180.02562 * 8 7 5 10 10 C 1.38559 * 120.33245 * 359.97438 * 9 8 7 11 11 C 1.38026 * 120.40276 * 0.02562 * 10 9 8 12 12 C 1.38846 * 120.06883 * 0.02562 * 11 10 9 13 13 N 1.39295 * 120.16405 * 180.02562 * 12 11 10 14 14 C 1.34773 * 120.00005 * 28.69729 * 13 12 11 15 15 O 1.21276 * 119.99867 * 5.15145 * 14 13 12 16 16 C 1.50694 * 120.00203 * 185.15926 * 14 13 12 17 17 N 1.46499 * 109.47362 * 179.97438 * 16 14 13 18 18 C 1.36935 * 119.99962 * 269.99936 * 17 16 14 19 19 H 1.08004 * 119.99514 * 191.61568 * 18 17 16 20 20 C 1.38809 * 120.00272 * 11.61102 * 18 17 16 21 21 N 1.31621 * 119.99893 * 27.45046 * 20 18 17 22 22 Si 1.86801 * 120.00177 * 207.44801 * 20 18 17 23 23 H 1.48499 * 109.47141 * 60.00110 * 22 20 18 24 24 H 1.48501 * 109.47088 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47000 * 300.00041 * 22 20 18 26 26 C 1.46498 * 119.99666 * 89.99742 * 17 16 14 27 27 C 1.53002 * 117.49865 * 194.32900 * 26 17 16 28 28 C 1.53005 * 117.49882 * 125.67466 * 26 17 16 29 29 H 1.08997 * 109.47291 * 300.00285 * 1 2 3 30 30 H 1.09003 * 109.46949 * 60.00138 * 1 2 3 31 31 H 1.08997 * 109.47190 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47291 * 239.99715 * 2 1 3 33 33 H 1.08997 * 109.47232 * 59.99679 * 3 2 1 34 34 H 1.08994 * 109.47339 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47059 * 299.99795 * 3 2 1 36 36 H 0.96994 * 120.00000 * 334.99492 * 4 2 1 37 37 H 1.08000 * 120.04318 * 0.02562 * 8 7 5 38 38 H 1.08006 * 119.83495 * 180.02562 * 9 8 7 39 39 H 1.07998 * 119.79999 * 179.74325 * 10 9 8 40 40 H 1.08003 * 119.96650 * 180.02562 * 11 10 9 41 41 H 0.97000 * 119.99411 * 208.69555 * 13 12 11 42 42 H 1.08997 * 109.46984 * 300.00047 * 16 14 13 43 43 H 1.09008 * 109.47407 * 59.99359 * 16 14 13 44 44 H 0.96998 * 119.99952 * 185.01306 * 21 20 18 45 45 H 1.09000 * 115.55497 * 340.00647 * 26 17 16 46 46 H 1.09003 * 117.49519 * 0.02562 * 27 26 17 47 47 H 1.09007 * 117.49709 * 145.02129 * 27 26 17 48 48 H 1.08998 * 117.50283 * 214.98274 * 28 26 17 49 49 H 1.09006 * 117.49747 * 359.97438 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 3.2402 -1.2591 1.1945 6 8 3.9375 -1.1985 0.2002 7 6 3.7322 -1.9541 2.3991 8 6 2.9236 -2.0505 3.5340 9 6 3.3890 -2.7005 4.6565 10 6 4.6564 -3.2604 4.6657 11 6 5.4668 -3.1731 3.5518 12 6 5.0150 -2.5211 2.4122 13 7 5.8310 -2.4323 1.2868 14 6 6.7475 -3.3896 1.0417 15 8 6.7993 -4.3744 1.7475 16 6 7.7081 -3.2361 -0.1092 17 7 8.5960 -4.4001 -0.1628 18 6 9.7790 -4.3911 0.5269 19 1 10.5167 -5.1584 0.3435 20 6 10.0301 -3.3960 1.4614 21 7 9.0293 -2.8107 2.0845 22 14 11.7883 -2.8874 1.8348 23 1 12.4325 -2.3855 0.5945 24 1 11.7858 -1.8141 2.8611 25 1 12.5444 -4.0587 2.3461 26 6 8.2183 -5.5736 -0.9542 27 6 8.9970 -6.8685 -0.7135 28 6 9.2170 -6.0708 -2.0013 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6767 1.9564 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.4621 -0.7386 1.9894 37 1 1.9348 -1.6162 3.5319 38 1 2.7625 -2.7746 5.5331 39 1 5.0141 -3.7642 5.5515 40 1 6.4533 -3.6125 3.5666 41 1 5.7395 -1.6815 0.6795 42 1 7.1488 -3.1621 -1.0418 43 1 8.3018 -2.3327 0.0310 44 1 9.1993 -2.0665 2.6829 45 1 7.1575 -5.6606 -1.1893 46 1 9.7901 -6.8472 0.0339 47 1 8.4486 -7.8073 -0.7906 48 1 8.8132 -6.4852 -2.9251 49 1 10.1549 -5.5245 -2.1016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299524602.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:01 Heat of formation + Delta-G solvation = 20.231871 kcal Electronic energy + Delta-G solvation = -31055.998599 eV Core-core repulsion = 26985.340617 eV Total energy + Delta-G solvation = -4070.657982 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.44534 -38.94208 -37.70225 -36.68011 -36.03808 -33.77872 -33.29085 -32.19946 -30.61227 -30.09561 -29.26044 -27.45643 -26.52738 -24.07088 -23.69987 -22.41460 -21.42327 -21.18028 -20.56761 -19.96051 -19.30644 -17.71511 -17.07074 -16.34929 -16.09401 -15.89609 -15.65866 -15.14665 -14.90993 -14.36493 -14.22803 -14.19848 -14.00973 -13.92236 -13.52916 -13.12197 -12.92254 -12.82581 -12.56902 -12.40561 -12.26297 -12.23276 -11.85524 -11.69393 -11.59459 -11.31321 -11.22402 -11.05422 -10.81224 -10.65647 -10.54883 -10.31967 -10.08772 -9.83670 -9.79651 -9.49920 -9.38659 -9.21122 -8.72029 -8.49370 -8.27439 -7.39530 -6.88896 -5.88506 -3.15785 1.15337 1.77081 3.08435 3.13249 3.38952 3.45955 3.47719 3.92380 4.05723 4.39813 4.52914 4.58209 4.82440 4.88503 4.90990 4.98573 5.02999 5.16021 5.31973 5.32223 5.38763 5.44752 5.53688 5.57607 5.69099 5.78814 5.85839 5.86818 5.92338 6.04379 6.06825 6.13034 6.15693 6.32438 6.41346 6.46502 6.50745 6.54383 6.62911 6.82923 6.87638 6.89472 7.00039 7.09615 7.13911 7.48303 7.66166 7.76218 8.18020 8.26589 8.54357 9.07522 9.53488 9.77450 10.18836 11.19624 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011669 B = 0.003280 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.011430 B = 8535.082911 C = 9185.720075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.136 3.864 3 C -0.164 4.164 4 N -0.727 5.727 5 C 0.571 3.429 6 O -0.542 6.542 7 C -0.208 4.208 8 C -0.069 4.069 9 C -0.171 4.171 10 C -0.074 4.074 11 C -0.136 4.136 12 C 0.249 3.751 13 N -0.672 5.672 14 C 0.525 3.475 15 O -0.500 6.500 16 C 0.167 3.833 17 N -0.538 5.538 18 C -0.249 4.249 19 H 0.082 0.918 20 C 0.004 3.996 21 N -0.890 5.890 22 Si 0.898 3.102 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.284 1.284 26 C 0.131 3.869 27 C -0.200 4.200 28 C -0.222 4.222 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.398 0.602 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.162 0.838 41 H 0.413 0.587 42 H 0.049 0.951 43 H 0.099 0.901 44 H 0.254 0.746 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.275 6.458 -0.501 18.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.032 3.968 3 C -0.222 4.222 4 N -0.380 5.380 5 C 0.361 3.639 6 O -0.421 6.421 7 C -0.215 4.215 8 C -0.089 4.089 9 C -0.190 4.190 10 C -0.093 4.093 11 C -0.156 4.156 12 C 0.147 3.853 13 N -0.321 5.321 14 C 0.312 3.688 15 O -0.372 6.372 16 C 0.037 3.963 17 N -0.252 5.252 18 C -0.378 4.378 19 H 0.099 0.901 20 C -0.194 4.194 21 N -0.534 5.534 22 Si 0.727 3.273 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.211 1.211 26 C 0.021 3.979 27 C -0.239 4.239 28 C -0.262 4.262 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.233 0.767 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.179 0.821 41 H 0.255 0.745 42 H 0.067 0.933 43 H 0.117 0.883 44 H 0.064 0.936 45 H 0.108 0.892 46 H 0.115 0.885 47 H 0.094 0.906 48 H 0.094 0.906 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.588 5.894 -0.657 17.617 hybrid contribution 0.506 0.677 0.720 1.111 sum -16.082 6.572 0.063 17.373 Atomic orbital electron populations 1.22076 0.94330 1.02597 1.02781 1.20918 0.93737 0.93071 0.89085 1.22191 1.02467 0.95737 1.01810 1.45966 1.18023 1.57315 1.16684 1.18217 0.80980 0.77391 0.87297 1.90589 1.55931 1.60638 1.34897 1.19519 0.95150 1.11056 0.95728 1.20848 0.97835 0.97826 0.92353 1.20835 0.97149 1.02586 0.98421 1.21244 0.93577 0.96637 0.97848 1.21692 1.02585 1.00809 0.90522 1.17937 0.87624 0.92072 0.87709 1.44520 1.35520 1.27803 1.24210 1.22354 0.77817 0.80993 0.87603 1.90496 1.67741 1.30749 1.48172 1.20582 0.90834 0.92988 0.91931 1.43511 1.19053 1.10734 1.51928 1.19198 0.91244 1.11548 1.15772 0.90070 1.24650 0.97406 1.01394 0.95950 1.69979 1.29815 1.24972 1.28657 0.86420 0.85343 0.78201 0.77325 1.21188 1.21782 1.21060 1.20911 0.93196 0.87569 0.96246 1.23129 1.05281 0.95464 1.00004 1.23415 1.03994 1.06225 0.92600 0.92166 0.90988 0.91972 0.89286 0.92638 0.91805 0.91771 0.76721 0.86512 0.86314 0.86003 0.82100 0.74480 0.93309 0.88266 0.93570 0.89224 0.88497 0.90641 0.90646 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 9.38 37.16 0.35 -0.66 16 2 C 0.14 1.27 3.18 -67.93 -0.22 1.06 16 3 C -0.16 -1.47 9.48 37.16 0.35 -1.11 16 4 N -0.73 -7.73 5.03 -54.85 -0.28 -8.00 16 5 C 0.57 8.52 7.73 -12.48 -0.10 8.43 16 6 O -0.54 -9.57 13.48 5.28 0.07 -9.50 16 7 C -0.21 -3.29 5.89 -104.81 -0.62 -3.91 16 8 C -0.07 -0.88 9.53 -39.20 -0.37 -1.25 16 9 C -0.17 -2.20 10.02 -39.62 -0.40 -2.60 16 10 C -0.07 -1.15 10.03 -39.54 -0.40 -1.55 16 11 C -0.14 -2.67 8.67 -39.43 -0.34 -3.01 16 12 C 0.25 4.83 6.37 -83.48 -0.53 4.30 16 13 N -0.67 -13.97 4.80 -9.69 -0.05 -14.02 16 14 C 0.52 12.45 5.60 -10.99 -0.06 12.39 16 15 O -0.50 -13.45 13.25 5.56 0.07 -13.37 16 16 C 0.17 3.89 5.48 -5.20 -0.03 3.87 16 17 N -0.54 -13.31 2.38 -167.02 -0.40 -13.71 16 18 C -0.25 -6.67 8.90 -15.06 -0.13 -6.80 16 19 H 0.08 2.17 6.27 -52.48 -0.33 1.84 16 20 C 0.00 0.11 4.78 -17.43 -0.08 0.02 16 21 N -0.89 -24.32 8.99 55.49 0.50 -23.82 16 22 Si 0.90 21.46 29.64 -169.99 -5.04 16.42 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 C 0.13 2.84 6.60 -67.93 -0.45 2.39 16 27 C -0.20 -4.05 9.77 -26.70 -0.26 -4.32 16 28 C -0.22 -4.22 10.14 -26.69 -0.27 -4.49 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 1.00 7.58 -51.93 -0.39 0.61 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.40 3.20 6.63 -40.82 -0.27 2.93 16 37 H 0.12 1.01 6.41 -52.49 -0.34 0.68 16 38 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 39 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 40 H 0.16 3.82 6.06 -52.48 -0.32 3.51 16 41 H 0.41 8.19 6.10 -40.82 -0.25 7.94 16 42 H 0.05 1.00 8.07 -51.93 -0.42 0.58 16 43 H 0.10 2.43 6.61 -51.92 -0.34 2.09 16 44 H 0.25 6.89 8.32 -40.82 -0.34 6.55 16 45 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 46 H 0.10 2.15 6.43 -51.93 -0.33 1.82 16 47 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 48 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 49 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 LS Contribution 396.42 15.07 5.97 5.97 Total: -1.00 -31.59 396.42 -9.90 -41.49 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: -7.20 Total: 15.78 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -3.56 Total: 2.75 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: -0.22 Total: -59.55 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: 0.14 Total: -22.87 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.04 Total: 16.42 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.59 -9.90 -41.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299524602.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.721 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds