Wall clock time and date at job start Wed Apr 1 2020 03:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47197 * 2 1 4 4 N 1.46499 * 109.46757 * 119.99901 * 2 1 3 5 5 C 1.34773 * 119.99814 * 155.00146 * 4 2 1 6 6 O 1.21596 * 119.99927 * 0.02562 * 5 4 2 7 7 C 1.47523 * 120.00288 * 179.97438 * 5 4 2 8 8 C 1.39683 * 120.19448 * 1.39159 * 7 5 4 9 9 C 1.37803 * 119.91985 * 180.02562 * 8 7 5 10 10 C 1.38559 * 120.33245 * 359.97438 * 9 8 7 11 11 C 1.38026 * 120.40276 * 0.02562 * 10 9 8 12 12 C 1.38846 * 120.06883 * 0.02562 * 11 10 9 13 13 N 1.39295 * 120.16405 * 180.02562 * 12 11 10 14 14 C 1.34773 * 120.00005 * 28.69729 * 13 12 11 15 15 O 1.21276 * 119.99867 * 5.15145 * 14 13 12 16 16 C 1.50694 * 120.00203 * 185.15926 * 14 13 12 17 17 N 1.46499 * 109.47362 * 179.97438 * 16 14 13 18 18 C 1.36935 * 119.99962 * 269.99936 * 17 16 14 19 19 H 1.08004 * 119.99514 * 191.61568 * 18 17 16 20 20 C 1.38809 * 120.00272 * 11.61102 * 18 17 16 21 21 N 1.31621 * 119.99893 * 27.45046 * 20 18 17 22 22 Si 1.86801 * 120.00177 * 207.44801 * 20 18 17 23 23 H 1.48499 * 109.47141 * 60.00110 * 22 20 18 24 24 H 1.48501 * 109.47088 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47000 * 300.00041 * 22 20 18 26 26 C 1.46498 * 119.99666 * 89.99742 * 17 16 14 27 27 C 1.53002 * 117.49865 * 194.32900 * 26 17 16 28 28 C 1.53005 * 117.49882 * 125.67466 * 26 17 16 29 29 H 1.08997 * 109.47291 * 300.00285 * 1 2 3 30 30 H 1.09003 * 109.46949 * 60.00138 * 1 2 3 31 31 H 1.08997 * 109.47190 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47291 * 239.99715 * 2 1 3 33 33 H 1.08997 * 109.47232 * 59.99679 * 3 2 1 34 34 H 1.08994 * 109.47339 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47059 * 299.99795 * 3 2 1 36 36 H 0.96994 * 120.00000 * 334.99492 * 4 2 1 37 37 H 1.08000 * 120.04318 * 0.02562 * 8 7 5 38 38 H 1.08006 * 119.83495 * 180.02562 * 9 8 7 39 39 H 1.07998 * 119.79999 * 179.74325 * 10 9 8 40 40 H 1.08003 * 119.96650 * 180.02562 * 11 10 9 41 41 H 0.97000 * 119.99411 * 208.69555 * 13 12 11 42 42 H 1.08997 * 109.46984 * 300.00047 * 16 14 13 43 43 H 1.09008 * 109.47407 * 59.99359 * 16 14 13 44 44 H 0.96998 * 119.99952 * 185.01306 * 21 20 18 45 45 H 1.09000 * 115.55497 * 340.00647 * 26 17 16 46 46 H 1.09003 * 117.49519 * 0.02562 * 27 26 17 47 47 H 1.09007 * 117.49709 * 145.02129 * 27 26 17 48 48 H 1.08998 * 117.50283 * 214.98274 * 28 26 17 49 49 H 1.09006 * 117.49747 * 359.97438 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 3.2402 -1.2591 1.1945 6 8 3.9375 -1.1985 0.2002 7 6 3.7322 -1.9541 2.3991 8 6 2.9236 -2.0505 3.5340 9 6 3.3890 -2.7005 4.6565 10 6 4.6564 -3.2604 4.6657 11 6 5.4668 -3.1731 3.5518 12 6 5.0150 -2.5211 2.4122 13 7 5.8310 -2.4323 1.2868 14 6 6.7475 -3.3896 1.0417 15 8 6.7993 -4.3744 1.7475 16 6 7.7081 -3.2361 -0.1092 17 7 8.5960 -4.4001 -0.1628 18 6 9.7790 -4.3911 0.5269 19 1 10.5167 -5.1584 0.3435 20 6 10.0301 -3.3960 1.4614 21 7 9.0293 -2.8107 2.0845 22 14 11.7883 -2.8874 1.8348 23 1 12.4325 -2.3855 0.5945 24 1 11.7858 -1.8141 2.8611 25 1 12.5444 -4.0587 2.3461 26 6 8.2183 -5.5736 -0.9542 27 6 8.9970 -6.8685 -0.7135 28 6 9.2170 -6.0708 -2.0013 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6767 1.9564 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.4621 -0.7386 1.9894 37 1 1.9348 -1.6162 3.5319 38 1 2.7625 -2.7746 5.5331 39 1 5.0141 -3.7642 5.5515 40 1 6.4533 -3.6125 3.5666 41 1 5.7395 -1.6815 0.6795 42 1 7.1488 -3.1621 -1.0418 43 1 8.3018 -2.3327 0.0310 44 1 9.1993 -2.0665 2.6829 45 1 7.1575 -5.6606 -1.1893 46 1 9.7901 -6.8472 0.0339 47 1 8.4486 -7.8073 -0.7906 48 1 8.8132 -6.4852 -2.9251 49 1 10.1549 -5.5245 -2.1016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299524602.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:00 Heat of formation + Delta-G solvation = 0.675705 kcal Electronic energy + Delta-G solvation = -31056.846618 eV Core-core repulsion = 26985.340617 eV Total energy + Delta-G solvation = -4071.506001 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.73138 -40.37830 -39.15556 -38.32090 -37.02429 -35.40949 -35.09656 -33.25833 -32.53962 -31.17181 -30.70456 -28.34092 -28.05832 -25.82840 -24.97033 -23.73743 -23.01412 -22.20664 -21.74739 -21.67107 -20.90922 -18.96076 -18.58551 -17.89228 -17.65867 -17.42286 -17.18385 -16.30530 -16.14674 -15.94824 -15.84310 -15.53761 -15.36919 -15.10337 -14.90346 -14.56749 -14.27705 -14.11704 -13.92675 -13.70390 -13.41409 -13.20592 -13.15288 -13.01331 -12.89205 -12.70657 -12.43478 -12.42773 -12.28194 -12.26798 -12.10962 -11.94460 -11.86295 -11.74725 -11.25486 -11.04482 -10.83048 -10.40274 -10.26925 -10.19623 -9.81037 -8.83822 -8.79933 -7.90799 -5.20443 -0.08369 0.50975 1.44716 1.47205 1.54177 1.89759 2.17305 2.29660 2.42222 2.62459 3.03769 3.09909 3.37947 3.47323 3.74880 3.90690 4.03100 4.16237 4.18987 4.21771 4.33336 4.35943 4.41718 4.44579 4.48724 4.57071 4.69352 4.77612 4.78739 4.84895 4.87922 4.93103 4.96972 5.04201 5.07058 5.10283 5.26797 5.29236 5.32670 5.37205 5.43812 5.47902 5.58053 5.64060 5.66265 5.79706 6.19296 6.20804 6.54913 6.84136 7.07023 7.24805 7.71711 7.88446 8.20617 9.13276 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011669 B = 0.003280 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.011430 B = 8535.082911 C = 9185.720075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.131 3.869 3 C -0.160 4.160 4 N -0.705 5.705 5 C 0.565 3.435 6 O -0.577 6.577 7 C -0.207 4.207 8 C -0.053 4.053 9 C -0.151 4.151 10 C -0.075 4.075 11 C -0.168 4.168 12 C 0.207 3.793 13 N -0.670 5.670 14 C 0.527 3.473 15 O -0.542 6.542 16 C 0.168 3.832 17 N -0.554 5.554 18 C -0.257 4.257 19 H 0.076 0.924 20 C -0.043 4.043 21 N -0.905 5.905 22 Si 0.957 3.043 23 H -0.279 1.279 24 H -0.297 1.297 25 H -0.286 1.286 26 C 0.099 3.901 27 C -0.200 4.200 28 C -0.189 4.189 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.031 0.969 35 H 0.080 0.920 36 H 0.414 0.586 37 H 0.170 0.830 38 H 0.167 0.833 39 H 0.138 0.862 40 H 0.109 0.891 41 H 0.414 0.586 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.244 0.756 45 H 0.098 0.902 46 H 0.071 0.929 47 H 0.100 0.900 48 H 0.112 0.888 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.822 7.270 -0.112 22.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.027 3.973 3 C -0.218 4.218 4 N -0.358 5.358 5 C 0.355 3.645 6 O -0.459 6.459 7 C -0.213 4.213 8 C -0.071 4.071 9 C -0.170 4.170 10 C -0.094 4.094 11 C -0.189 4.189 12 C 0.107 3.893 13 N -0.319 5.319 14 C 0.316 3.684 15 O -0.417 6.417 16 C 0.038 3.962 17 N -0.270 5.270 18 C -0.386 4.386 19 H 0.094 0.906 20 C -0.239 4.239 21 N -0.550 5.550 22 Si 0.786 3.214 23 H -0.205 1.205 24 H -0.224 1.224 25 H -0.212 1.212 26 C -0.009 4.009 27 C -0.239 4.239 28 C -0.230 4.230 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.051 0.949 35 H 0.099 0.901 36 H 0.252 0.748 37 H 0.187 0.813 38 H 0.185 0.815 39 H 0.156 0.844 40 H 0.127 0.873 41 H 0.256 0.744 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.054 0.946 45 H 0.115 0.885 46 H 0.090 0.910 47 H 0.119 0.881 48 H 0.130 0.870 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.201 6.725 -0.264 21.293 hybrid contribution 1.432 0.437 0.642 1.629 sum -18.769 7.162 0.378 20.093 Atomic orbital electron populations 1.22026 0.91231 1.03209 1.04395 1.21077 0.96001 0.92678 0.87495 1.22158 1.00410 0.95806 1.03449 1.45836 1.16436 1.55696 1.17818 1.18228 0.82069 0.77688 0.86542 1.90569 1.57216 1.62069 1.36024 1.19762 0.94063 1.10093 0.97413 1.21435 0.99154 0.96042 0.90509 1.21342 0.95817 0.99932 0.99917 1.21493 0.94490 0.96578 0.96835 1.21360 1.01579 1.03114 0.92890 1.18203 0.89293 0.94609 0.87191 1.44200 1.35526 1.27178 1.24971 1.22237 0.78094 0.80975 0.87140 1.90463 1.69280 1.32467 1.49483 1.20538 0.90682 0.92044 0.92965 1.43639 1.19058 1.11980 1.52275 1.19355 0.92147 1.11450 1.15635 0.90616 1.25322 1.00280 1.01951 0.96349 1.70160 1.30894 1.24903 1.29056 0.85500 0.81661 0.77318 0.76933 1.20509 1.22383 1.21194 1.21200 0.94356 0.87532 0.97813 1.23121 1.04420 0.95980 1.00331 1.23370 1.02261 1.04183 0.93160 0.90246 0.89710 0.91854 0.91720 0.91068 0.94949 0.90107 0.74782 0.81276 0.81527 0.84436 0.87296 0.74354 0.91074 0.90206 0.94594 0.88461 0.91006 0.88126 0.87020 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.38 71.98 0.68 -0.68 16 2 C 0.13 2.18 3.18 44.99 0.14 2.33 16 3 C -0.16 -2.58 9.48 71.98 0.68 -1.90 16 4 N -0.71 -13.16 5.03 -445.71 -2.24 -15.40 16 5 C 0.57 16.48 7.73 86.69 0.67 17.15 16 6 O -0.58 -21.05 13.48 -4.02 -0.05 -21.10 16 7 C -0.21 -6.37 5.89 -19.99 -0.12 -6.49 16 8 C -0.05 -1.12 9.53 22.52 0.21 -0.91 16 9 C -0.15 -3.30 10.02 22.24 0.22 -3.08 16 10 C -0.08 -2.29 10.03 22.30 0.22 -2.07 16 11 C -0.17 -7.05 8.67 22.37 0.19 -6.86 16 12 C 0.21 8.42 6.37 38.59 0.25 8.67 16 13 N -0.67 -29.91 4.80 -302.96 -1.45 -31.36 16 14 C 0.53 26.88 5.60 87.66 0.49 27.37 16 15 O -0.54 -31.41 13.25 -3.02 -0.04 -31.45 16 16 C 0.17 8.31 5.48 85.63 0.47 8.78 16 17 N -0.55 -28.66 2.38 -682.34 -1.62 -30.28 16 18 C -0.26 -14.36 8.90 84.03 0.75 -13.61 16 19 H 0.08 4.22 6.27 -2.91 -0.02 4.20 16 20 C -0.04 -2.43 4.78 84.86 0.41 -2.02 16 21 N -0.90 -52.68 8.99 21.65 0.19 -52.49 16 22 Si 0.96 46.10 29.64 68.60 2.03 48.13 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 26 C 0.10 4.40 6.60 44.99 0.30 4.70 16 27 C -0.20 -8.12 9.77 30.62 0.30 -7.82 16 28 C -0.19 -7.03 10.14 30.62 0.31 -6.72 16 29 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.08 0.59 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 1.42 7.58 -2.39 -0.02 1.40 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.03 0.72 8.14 -2.39 -0.02 0.71 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.41 4.76 6.63 -92.71 -0.62 4.15 16 37 H 0.17 1.81 6.41 -2.91 -0.02 1.79 16 38 H 0.17 2.17 8.06 -2.91 -0.02 2.14 16 39 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 40 H 0.11 5.73 6.06 -2.91 -0.02 5.71 16 41 H 0.41 17.70 6.10 -92.71 -0.57 17.14 16 42 H 0.07 3.09 8.07 -2.39 -0.02 3.07 16 43 H 0.08 4.20 6.61 -2.38 -0.02 4.19 16 44 H 0.24 14.18 8.32 -92.71 -0.77 13.40 16 45 H 0.10 4.08 8.14 -2.39 -0.02 4.07 16 46 H 0.07 3.29 6.43 -2.39 -0.02 3.27 16 47 H 0.10 3.53 8.14 -2.38 -0.02 3.51 16 48 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 49 H 0.08 3.09 8.14 -2.38 -0.02 3.07 16 Total: -1.00 -76.72 396.42 2.79 -73.92 By element: Atomic # 1 Polarization: 43.38 SS G_CDS: -0.20 Total: 43.18 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 6.17 Total: 16.84 kcal Atomic # 7 Polarization: -124.41 SS G_CDS: -5.12 Total: -129.53 kcal Atomic # 8 Polarization: -52.46 SS G_CDS: -0.09 Total: -52.55 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -76.72 2.79 -73.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299524602.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.599 kcal (2) G-P(sol) polarization free energy of solvation -76.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds