Wall clock time and date at job start Wed Apr 1 2020 03:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46978 * 2 1 4 4 N 1.46494 * 109.47317 * 120.00135 * 2 1 3 5 5 C 1.34774 * 120.00290 * 84.99938 * 4 2 1 6 6 O 1.21589 * 119.99656 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00489 * 179.97438 * 5 4 2 8 8 C 1.46497 * 120.00030 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.47094 * 180.02562 * 8 7 5 10 10 C 1.38379 * 119.84724 * 89.99665 * 9 8 7 11 11 C 1.37928 * 120.15273 * 179.97438 * 10 9 8 12 12 C 1.39647 * 119.84567 * 0.02562 * 11 10 9 13 13 C 1.47727 * 120.15127 * 180.02562 * 12 11 10 14 14 O 1.21599 * 120.00056 * 340.03903 * 13 12 11 15 15 N 1.34772 * 120.00073 * 160.31335 * 13 12 11 16 16 C 1.36869 * 119.99951 * 355.53156 * 15 13 12 17 17 H 1.08002 * 119.99844 * 293.20612 * 16 15 13 18 18 C 1.39053 * 119.99834 * 113.21271 * 16 15 13 19 19 N 1.31353 * 119.99978 * 351.20976 * 18 16 15 20 20 Si 1.86805 * 119.99836 * 171.21237 * 18 16 15 21 21 H 1.48501 * 109.46960 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47102 * 119.99668 * 20 18 16 23 23 H 1.48492 * 109.46868 * 239.99926 * 20 18 16 24 24 C 1.46505 * 120.00185 * 175.53219 * 15 13 12 25 25 C 1.52993 * 117.50299 * 171.44075 * 24 15 13 26 26 C 1.52991 * 117.49935 * 102.77650 * 24 15 13 27 27 C 1.39637 * 119.69903 * 0.27617 * 12 11 10 28 28 C 1.37936 * 119.84553 * 359.44601 * 27 12 11 29 29 H 1.09003 * 109.47248 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46846 * 299.99860 * 1 2 3 31 31 H 1.09002 * 109.47797 * 59.99333 * 1 2 3 32 32 H 1.09004 * 109.47043 * 240.00600 * 2 1 3 33 33 H 1.09001 * 109.46600 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47018 * 300.00056 * 3 2 1 35 35 H 1.08995 * 109.46952 * 60.00298 * 3 2 1 36 36 H 0.97003 * 120.00034 * 264.99404 * 4 2 1 37 37 H 0.96999 * 119.99507 * 0.02562 * 7 5 4 38 38 H 1.08994 * 109.47542 * 60.00248 * 8 7 5 39 39 H 1.09002 * 109.47111 * 299.99898 * 8 7 5 40 40 H 1.08007 * 119.92262 * 359.96308 * 10 9 8 41 41 H 1.08003 * 120.07890 * 179.97438 * 11 10 9 42 42 H 0.97010 * 120.00026 * 185.03009 * 19 18 16 43 43 H 1.09006 * 115.54401 * 317.11171 * 24 15 13 44 44 H 1.09003 * 117.49787 * 359.97438 * 25 24 15 45 45 H 1.08994 * 117.50340 * 145.01683 * 25 24 15 46 46 H 1.09002 * 117.50057 * 214.97839 * 26 24 15 47 47 H 1.08998 * 117.50351 * 359.97438 * 26 24 15 48 48 H 1.08001 * 120.08007 * 179.70143 * 27 12 11 49 49 H 1.08004 * 119.92299 * 180.24930 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -2.0322 1.1943 6 8 1.8583 -2.6693 0.1998 7 7 2.5969 -2.6675 2.2945 8 6 2.7362 -4.1259 2.2927 9 6 3.2529 -4.5828 3.6326 10 6 2.3618 -4.8998 4.6428 11 6 2.8278 -5.3191 5.8713 12 6 4.2023 -5.4230 6.0948 13 6 4.7088 -5.8720 7.4079 14 8 3.9949 -5.8054 8.3900 15 7 5.9639 -6.3501 7.5184 16 6 6.7379 -6.5056 6.4003 17 1 6.4703 -7.2413 5.6563 18 6 7.8689 -5.7164 6.2224 19 7 8.1009 -4.7090 7.0328 20 14 9.0583 -6.0888 4.8309 21 1 8.5735 -7.2666 4.0673 22 1 9.1458 -4.9140 3.9269 23 1 10.4011 -6.3823 5.3928 24 6 6.4999 -6.7036 8.8353 25 6 7.8483 -7.4252 8.8788 26 6 6.5606 -8.1887 9.1979 27 6 5.0960 -5.0954 5.0731 28 6 4.6162 -4.6829 3.8474 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3635 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 2.2491 -0.1823 1.9894 37 1 2.8276 -2.1592 3.0878 38 1 3.4367 -4.4230 1.5123 39 1 1.7653 -4.5834 2.1029 40 1 1.2990 -4.8184 4.4687 41 1 2.1312 -5.5658 6.6590 42 1 8.8490 -4.1145 6.8658 43 1 6.2804 -5.9983 9.6369 44 1 8.3365 -7.6373 7.9276 45 1 8.5158 -7.1950 9.7091 46 1 6.3814 -8.4605 10.2382 47 1 6.2013 -8.9028 8.4570 48 1 6.1604 -5.1689 5.2407 49 1 5.3062 -4.4332 3.0550 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342423146.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:12 Heat of formation + Delta-G solvation = -5.172115 kcal Electronic energy + Delta-G solvation = -29815.553647 eV Core-core repulsion = 25743.794066 eV Total energy + Delta-G solvation = -4071.759581 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.16387 -39.43983 -37.99778 -36.37447 -35.97617 -34.62432 -33.72038 -31.94030 -31.36285 -30.33407 -30.11028 -27.50081 -26.14559 -25.39562 -22.64717 -21.97937 -21.59033 -21.42127 -20.77107 -20.47033 -19.48616 -18.57168 -17.39976 -16.59507 -16.14084 -15.61684 -15.53530 -15.19961 -14.77868 -14.74497 -14.59536 -14.26628 -14.06152 -13.90556 -13.68783 -13.30507 -13.11563 -12.85412 -12.73555 -12.60226 -12.49236 -12.29728 -12.15161 -11.83919 -11.64306 -11.51939 -11.37007 -11.22183 -11.15896 -10.89080 -10.64473 -10.46121 -10.38012 -10.24751 -9.74868 -9.41219 -9.36822 -8.99519 -8.87596 -8.61151 -8.36068 -8.20322 -7.24427 -6.52700 -4.47151 1.43862 2.02915 2.72587 2.97458 3.09445 3.12132 3.19075 3.74521 3.90919 4.25612 4.52130 4.58372 4.60635 4.68397 4.79096 4.92085 4.97738 5.04180 5.27133 5.27545 5.40380 5.48787 5.49152 5.63322 5.66647 5.74250 5.83854 5.85860 5.86745 5.98360 6.00489 6.05287 6.14452 6.29452 6.39138 6.40771 6.45243 6.49175 6.62589 6.70964 6.83386 6.90270 6.98688 7.08719 7.15310 7.23189 7.32423 7.62962 7.97184 8.04939 8.19145 8.57035 8.81875 9.32195 9.80220 10.46222 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015451 B = 0.002449 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.721106 B =11431.103126 C =12406.023012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.154 3.846 3 C -0.161 4.161 4 N -0.745 5.745 5 C 0.703 3.297 6 O -0.595 6.595 7 N -0.739 5.739 8 C 0.184 3.816 9 C -0.109 4.109 10 C -0.127 4.127 11 C -0.082 4.082 12 C -0.089 4.089 13 C 0.535 3.465 14 O -0.594 6.594 15 N -0.413 5.413 16 C -0.350 4.350 17 H 0.084 0.916 18 C 0.058 3.942 19 N -0.838 5.838 20 Si 0.897 3.103 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.274 1.274 24 C 0.110 3.890 25 C -0.157 4.157 26 C -0.209 4.209 27 C -0.077 4.077 28 C -0.129 4.129 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.395 0.605 37 H 0.398 0.602 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.117 0.883 41 H 0.124 0.876 42 H 0.274 0.726 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.086 0.914 48 H 0.190 0.810 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.747 8.060 -9.467 14.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 C -0.218 4.218 4 N -0.401 5.401 5 C 0.403 3.597 6 O -0.474 6.474 7 N -0.394 5.394 8 C 0.061 3.939 9 C -0.110 4.110 10 C -0.145 4.145 11 C -0.101 4.101 12 C -0.093 4.093 13 C 0.326 3.674 14 O -0.479 6.479 15 N -0.131 5.131 16 C -0.479 4.479 17 H 0.101 0.899 18 C -0.153 4.153 19 N -0.470 5.470 20 Si 0.721 3.279 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.200 1.200 24 C 0.005 3.995 25 C -0.194 4.194 26 C -0.248 4.248 27 C -0.094 4.094 28 C -0.148 4.148 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.229 0.771 37 H 0.232 0.768 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.135 0.865 41 H 0.142 0.858 42 H 0.084 0.916 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.098 0.902 46 H 0.099 0.901 47 H 0.104 0.896 48 H 0.206 0.794 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.151 7.612 -9.822 14.338 hybrid contribution 0.970 0.389 0.132 1.053 sum -6.181 8.001 -9.690 14.005 Atomic orbital electron populations 1.22214 0.95594 1.02694 1.01780 1.20763 0.93835 0.92256 0.88207 1.22086 1.01813 0.95127 1.02822 1.45265 1.72081 1.05457 1.17325 1.15978 0.78275 0.81800 0.83620 1.90909 1.57421 1.65726 1.33333 1.45279 1.70969 1.08065 1.15089 1.20024 1.01083 0.78342 0.94480 1.19886 0.94167 1.02215 0.94718 1.20766 0.98714 1.02004 0.93046 1.21227 0.94934 0.97455 0.96501 1.20063 0.93146 1.01004 0.95042 1.18496 0.83022 0.78342 0.87586 1.90616 1.58501 1.59424 1.39398 1.42487 1.10491 1.55379 1.04726 1.19092 1.07721 1.21325 0.99738 0.89891 1.25752 0.97812 0.94477 0.97251 1.69871 1.28717 1.12938 1.35424 0.86335 0.80860 0.79496 0.81196 1.18493 1.19923 1.19971 1.21342 0.98147 0.91555 0.88445 1.22911 0.90553 1.03472 1.02511 1.23306 1.03611 0.97284 1.00620 1.23424 1.05262 0.90435 0.90251 1.21176 0.93964 1.01347 0.98323 0.91973 0.92638 0.91823 0.89490 0.91936 0.90946 0.92095 0.77114 0.76763 0.90990 0.91138 0.86535 0.85757 0.91604 0.88246 0.87873 0.90209 0.90090 0.89566 0.79380 0.86541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.48 37.16 0.35 -1.00 16 2 C 0.15 1.33 3.18 -67.93 -0.22 1.12 16 3 C -0.16 -0.95 9.38 37.16 0.35 -0.60 16 4 N -0.75 -7.13 5.08 -58.68 -0.30 -7.42 16 5 C 0.70 9.21 8.53 -86.92 -0.74 8.46 16 6 O -0.60 -10.06 16.01 5.29 0.08 -9.98 16 7 N -0.74 -8.88 5.55 -66.42 -0.37 -9.24 16 8 C 0.18 2.44 5.79 -5.19 -0.03 2.41 16 9 C -0.11 -1.62 5.26 -104.52 -0.55 -2.17 16 10 C -0.13 -1.95 9.68 -39.64 -0.38 -2.33 16 11 C -0.08 -1.52 9.59 -39.17 -0.38 -1.89 16 12 C -0.09 -1.92 5.72 -104.97 -0.60 -2.52 16 13 C 0.54 13.18 7.51 -12.38 -0.09 13.09 16 14 O -0.59 -15.79 16.50 5.28 0.09 -15.71 16 15 N -0.41 -9.96 2.57 -108.83 -0.28 -10.24 16 16 C -0.35 -8.12 4.52 -15.00 -0.07 -8.19 16 17 H 0.08 1.93 7.74 -52.49 -0.41 1.53 16 18 C 0.06 1.31 2.83 -17.45 -0.05 1.26 16 19 N -0.84 -20.30 13.33 55.50 0.74 -19.56 16 20 Si 0.90 17.58 29.40 -169.99 -5.00 12.58 16 21 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 22 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 24 C 0.11 2.50 5.50 -67.94 -0.37 2.13 16 25 C -0.16 -3.16 9.52 -26.70 -0.25 -3.42 16 26 C -0.21 -4.08 10.46 -26.70 -0.28 -4.36 16 27 C -0.08 -1.54 8.52 -39.17 -0.33 -1.87 16 28 C -0.13 -2.16 9.68 -39.64 -0.38 -2.55 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.92 7.58 -51.93 -0.39 0.52 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.40 2.83 8.62 -40.82 -0.35 2.48 16 37 H 0.40 4.16 8.48 -40.82 -0.35 3.82 16 38 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 39 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 40 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 41 H 0.12 2.27 7.78 -52.48 -0.41 1.86 16 42 H 0.27 6.27 8.32 -40.82 -0.34 5.93 16 43 H 0.10 2.36 8.10 -51.93 -0.42 1.94 16 44 H 0.10 2.19 6.62 -51.93 -0.34 1.85 16 45 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 46 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 47 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 48 H 0.19 4.13 3.25 -52.49 -0.17 3.96 16 49 H 0.12 1.76 8.06 -52.48 -0.42 1.33 16 LS Contribution 406.96 15.07 6.13 6.13 Total: -1.00 -29.44 406.96 -10.40 -39.84 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: -7.47 Total: 16.05 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -4.03 Total: -2.44 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.21 Total: -46.47 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: 0.17 Total: -25.69 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.00 Total: 12.58 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -29.44 -10.40 -39.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342423146.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.665 kcal (2) G-P(sol) polarization free energy of solvation -29.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds