Wall clock time and date at job start Wed Apr 1 2020 03:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46978 * 2 1 4 4 N 1.46494 * 109.47317 * 120.00135 * 2 1 3 5 5 C 1.34774 * 120.00290 * 84.99938 * 4 2 1 6 6 O 1.21589 * 119.99656 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00489 * 179.97438 * 5 4 2 8 8 C 1.46497 * 120.00030 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.47094 * 180.02562 * 8 7 5 10 10 C 1.38379 * 119.84724 * 89.99665 * 9 8 7 11 11 C 1.37928 * 120.15273 * 179.97438 * 10 9 8 12 12 C 1.39647 * 119.84567 * 0.02562 * 11 10 9 13 13 C 1.47727 * 120.15127 * 180.02562 * 12 11 10 14 14 O 1.21599 * 120.00056 * 340.03903 * 13 12 11 15 15 N 1.34772 * 120.00073 * 160.31335 * 13 12 11 16 16 C 1.36869 * 119.99951 * 355.53156 * 15 13 12 17 17 H 1.08002 * 119.99844 * 293.20612 * 16 15 13 18 18 C 1.39053 * 119.99834 * 113.21271 * 16 15 13 19 19 N 1.31353 * 119.99978 * 351.20976 * 18 16 15 20 20 Si 1.86805 * 119.99836 * 171.21237 * 18 16 15 21 21 H 1.48501 * 109.46960 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47102 * 119.99668 * 20 18 16 23 23 H 1.48492 * 109.46868 * 239.99926 * 20 18 16 24 24 C 1.46505 * 120.00185 * 175.53219 * 15 13 12 25 25 C 1.52993 * 117.50299 * 171.44075 * 24 15 13 26 26 C 1.52991 * 117.49935 * 102.77650 * 24 15 13 27 27 C 1.39637 * 119.69903 * 0.27617 * 12 11 10 28 28 C 1.37936 * 119.84553 * 359.44601 * 27 12 11 29 29 H 1.09003 * 109.47248 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46846 * 299.99860 * 1 2 3 31 31 H 1.09002 * 109.47797 * 59.99333 * 1 2 3 32 32 H 1.09004 * 109.47043 * 240.00600 * 2 1 3 33 33 H 1.09001 * 109.46600 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47018 * 300.00056 * 3 2 1 35 35 H 1.08995 * 109.46952 * 60.00298 * 3 2 1 36 36 H 0.97003 * 120.00034 * 264.99404 * 4 2 1 37 37 H 0.96999 * 119.99507 * 0.02562 * 7 5 4 38 38 H 1.08994 * 109.47542 * 60.00248 * 8 7 5 39 39 H 1.09002 * 109.47111 * 299.99898 * 8 7 5 40 40 H 1.08007 * 119.92262 * 359.96308 * 10 9 8 41 41 H 1.08003 * 120.07890 * 179.97438 * 11 10 9 42 42 H 0.97010 * 120.00026 * 185.03009 * 19 18 16 43 43 H 1.09006 * 115.54401 * 317.11171 * 24 15 13 44 44 H 1.09003 * 117.49787 * 359.97438 * 25 24 15 45 45 H 1.08994 * 117.50340 * 145.01683 * 25 24 15 46 46 H 1.09002 * 117.50057 * 214.97839 * 26 24 15 47 47 H 1.08998 * 117.50351 * 359.97438 * 26 24 15 48 48 H 1.08001 * 120.08007 * 179.70143 * 27 12 11 49 49 H 1.08004 * 119.92299 * 180.24930 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -2.0322 1.1943 6 8 1.8583 -2.6693 0.1998 7 7 2.5969 -2.6675 2.2945 8 6 2.7362 -4.1259 2.2927 9 6 3.2529 -4.5828 3.6326 10 6 2.3618 -4.8998 4.6428 11 6 2.8278 -5.3191 5.8713 12 6 4.2023 -5.4230 6.0948 13 6 4.7088 -5.8720 7.4079 14 8 3.9949 -5.8054 8.3900 15 7 5.9639 -6.3501 7.5184 16 6 6.7379 -6.5056 6.4003 17 1 6.4703 -7.2413 5.6563 18 6 7.8689 -5.7164 6.2224 19 7 8.1009 -4.7090 7.0328 20 14 9.0583 -6.0888 4.8309 21 1 8.5735 -7.2666 4.0673 22 1 9.1458 -4.9140 3.9269 23 1 10.4011 -6.3823 5.3928 24 6 6.4999 -6.7036 8.8353 25 6 7.8483 -7.4252 8.8788 26 6 6.5606 -8.1887 9.1979 27 6 5.0960 -5.0954 5.0731 28 6 4.6162 -4.6829 3.8474 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3635 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 2.2491 -0.1823 1.9894 37 1 2.8276 -2.1592 3.0878 38 1 3.4367 -4.4230 1.5123 39 1 1.7653 -4.5834 2.1029 40 1 1.2990 -4.8184 4.4687 41 1 2.1312 -5.5658 6.6590 42 1 8.8490 -4.1145 6.8658 43 1 6.2804 -5.9983 9.6369 44 1 8.3365 -7.6373 7.9276 45 1 8.5158 -7.1950 9.7091 46 1 6.3814 -8.4605 10.2382 47 1 6.2013 -8.9028 8.4570 48 1 6.1604 -5.1689 5.2407 49 1 5.3062 -4.4332 3.0550 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342423146.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:11 Heat of formation + Delta-G solvation = -22.692504 kcal Electronic energy + Delta-G solvation = -29816.313388 eV Core-core repulsion = 25743.794066 eV Total energy + Delta-G solvation = -4072.519322 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.29224 -40.95361 -39.48608 -37.83088 -37.14159 -35.89060 -35.33812 -33.28954 -32.81032 -31.68902 -31.33046 -28.06029 -27.46610 -27.13626 -24.09258 -23.32239 -23.02425 -22.61607 -21.99938 -21.63282 -21.21923 -19.54898 -19.06987 -17.83735 -17.52342 -17.31443 -16.64054 -16.58756 -16.20031 -15.85832 -15.78899 -15.66068 -15.33873 -15.28813 -14.87672 -14.78508 -14.33868 -14.21170 -13.96219 -13.85872 -13.44112 -13.42304 -13.17101 -13.07980 -13.02286 -12.97305 -12.83546 -12.33012 -12.27106 -12.22934 -12.00984 -11.88049 -11.84152 -11.45526 -11.36302 -11.13020 -10.76611 -10.40563 -10.35512 -9.80028 -9.75065 -9.66095 -9.05851 -8.29037 -6.28261 0.00258 0.62450 1.40963 1.48072 1.57976 1.74358 2.15867 2.17952 2.27642 2.84050 2.88032 3.05890 3.32808 3.43732 3.69403 3.98135 4.01125 4.13552 4.19564 4.20132 4.25042 4.32830 4.36794 4.39871 4.47547 4.63806 4.69898 4.77543 4.79228 4.81947 4.90189 4.96114 4.98813 5.05141 5.08625 5.22290 5.27875 5.30696 5.35629 5.42234 5.44118 5.45157 5.53724 5.64856 5.69160 5.85462 6.03167 6.15125 6.24844 6.38790 7.03337 7.10382 7.48719 7.60377 7.99505 8.71814 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015451 B = 0.002449 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.721106 B =11431.103126 C =12406.023012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.150 3.850 3 C -0.152 4.152 4 N -0.732 5.732 5 C 0.700 3.300 6 O -0.636 6.636 7 N -0.732 5.732 8 C 0.191 3.809 9 C -0.086 4.086 10 C -0.111 4.111 11 C -0.088 4.088 12 C -0.121 4.121 13 C 0.516 3.484 14 O -0.631 6.631 15 N -0.418 5.418 16 C -0.353 4.353 17 H 0.079 0.921 18 C 0.035 3.965 19 N -0.872 5.872 20 Si 0.953 3.047 21 H -0.256 1.256 22 H -0.268 1.268 23 H -0.276 1.276 24 C 0.070 3.930 25 C -0.142 4.142 26 C -0.185 4.185 27 C -0.092 4.092 28 C -0.124 4.124 29 H 0.033 0.967 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.409 0.591 37 H 0.408 0.592 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.150 0.850 41 H 0.120 0.880 42 H 0.276 0.724 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.099 0.901 46 H 0.107 0.893 47 H 0.083 0.917 48 H 0.171 0.829 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.988 8.971 -11.224 15.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.045 3.955 3 C -0.210 4.210 4 N -0.389 5.389 5 C 0.400 3.600 6 O -0.517 6.517 7 N -0.388 5.388 8 C 0.067 3.933 9 C -0.086 4.086 10 C -0.129 4.129 11 C -0.107 4.107 12 C -0.124 4.124 13 C 0.307 3.693 14 O -0.520 6.520 15 N -0.135 5.135 16 C -0.481 4.481 17 H 0.096 0.904 18 C -0.173 4.173 19 N -0.504 5.504 20 Si 0.776 3.224 21 H -0.180 1.180 22 H -0.193 1.193 23 H -0.201 1.201 24 C -0.035 4.035 25 C -0.179 4.179 26 C -0.224 4.224 27 C -0.109 4.109 28 C -0.143 4.143 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.245 0.755 37 H 0.244 0.756 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.167 0.833 41 H 0.138 0.862 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.111 0.889 45 H 0.117 0.883 46 H 0.125 0.875 47 H 0.102 0.898 48 H 0.187 0.813 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.374 8.547 -11.560 16.157 hybrid contribution 0.973 0.157 0.650 1.180 sum -6.401 8.704 -10.909 15.354 Atomic orbital electron populations 1.22166 0.95146 1.01253 1.03194 1.20893 0.94198 0.93517 0.86902 1.22030 1.01664 0.93108 1.04165 1.45222 1.71030 1.04358 1.18246 1.16129 0.78071 0.82677 0.83107 1.90886 1.59207 1.66839 1.34814 1.45098 1.70777 1.07598 1.15302 1.19907 1.01305 0.79125 0.92956 1.19990 0.93284 1.00161 0.95206 1.21037 1.00445 0.99913 0.91496 1.21280 0.93661 0.97925 0.97806 1.20004 0.94679 1.03626 0.94134 1.19179 0.83206 0.78198 0.88690 1.90554 1.59372 1.61220 1.40818 1.42683 1.10515 1.54896 1.05375 1.19099 1.07853 1.21430 0.99668 0.90396 1.26253 0.98490 0.93694 0.98825 1.69967 1.29409 1.13936 1.37103 0.85474 0.78604 0.79529 0.78803 1.17984 1.19266 1.20083 1.21443 1.00867 0.93282 0.87902 1.22886 0.90139 1.02241 1.02667 1.23320 1.02291 0.94782 1.01991 1.23163 1.04216 0.92118 0.91425 1.21307 0.95240 1.00417 0.97293 0.94743 0.91504 0.90171 0.91733 0.92084 0.89573 0.90781 0.75480 0.75647 0.91015 0.90500 0.83261 0.86192 0.91453 0.90351 0.88927 0.88291 0.87460 0.89840 0.81285 0.84608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.48 71.98 0.68 -1.66 16 2 C 0.15 2.33 3.18 44.99 0.14 2.47 16 3 C -0.15 -1.39 9.38 71.98 0.68 -0.71 16 4 N -0.73 -12.55 5.08 -457.82 -2.33 -14.88 16 5 C 0.70 17.11 8.53 179.06 1.53 18.64 16 6 O -0.64 -20.89 16.01 -4.00 -0.06 -20.95 16 7 N -0.73 -15.79 5.55 -482.30 -2.68 -18.46 16 8 C 0.19 4.55 5.79 85.63 0.50 5.05 16 9 C -0.09 -2.34 5.26 -19.80 -0.10 -2.45 16 10 C -0.11 -3.16 9.68 22.23 0.22 -2.95 16 11 C -0.09 -3.23 9.59 22.54 0.22 -3.01 16 12 C -0.12 -5.33 5.72 -20.09 -0.11 -5.45 16 13 C 0.52 26.55 7.51 86.75 0.65 27.20 16 14 O -0.63 -35.29 16.50 -4.03 -0.07 -35.36 16 15 N -0.42 -20.90 2.57 -616.50 -1.58 -22.49 16 16 C -0.35 -16.69 4.52 84.10 0.38 -16.31 16 17 H 0.08 3.71 7.74 -2.91 -0.02 3.69 16 18 C 0.04 1.60 2.83 84.96 0.24 1.84 16 19 N -0.87 -42.96 13.33 21.68 0.29 -42.67 16 20 Si 0.95 35.73 29.40 68.60 2.02 37.74 16 21 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 22 H -0.27 -9.72 7.11 99.48 0.71 -9.02 16 23 H -0.28 -10.34 7.11 99.48 0.71 -9.63 16 24 C 0.07 3.27 5.50 44.99 0.25 3.52 16 25 C -0.14 -5.70 9.52 30.62 0.29 -5.41 16 26 C -0.19 -7.17 10.46 30.62 0.32 -6.85 16 27 C -0.09 -3.71 8.52 22.54 0.19 -3.51 16 28 C -0.12 -3.96 9.68 22.23 0.22 -3.74 16 29 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 1.32 7.58 -2.38 -0.02 1.30 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.41 4.77 8.62 -92.71 -0.80 3.98 16 37 H 0.41 7.38 8.48 -92.71 -0.79 6.59 16 38 H 0.07 1.78 8.08 -2.39 -0.02 1.76 16 39 H 0.08 1.81 8.08 -2.39 -0.02 1.79 16 40 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 41 H 0.12 4.46 7.78 -2.91 -0.02 4.44 16 42 H 0.28 12.78 8.32 -92.70 -0.77 12.01 16 43 H 0.08 3.93 8.10 -2.38 -0.02 3.91 16 44 H 0.09 3.92 6.62 -2.39 -0.02 3.91 16 45 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 46 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 47 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 48 H 0.17 7.53 3.25 -2.91 -0.01 7.52 16 49 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -66.65 406.96 1.26 -65.38 By element: Atomic # 1 Polarization: 45.61 SS G_CDS: -0.60 Total: 45.01 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 6.28 Total: 6.67 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -6.30 Total: -98.49 kcal Atomic # 8 Polarization: -56.18 SS G_CDS: -0.13 Total: -56.31 kcal Atomic # 14 Polarization: 35.73 SS G_CDS: 2.02 Total: 37.74 kcal Total: -66.65 1.26 -65.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342423146.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.692 kcal (2) G-P(sol) polarization free energy of solvation -66.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds