Wall clock time and date at job start Wed Apr 1 2020 03:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47179 * 2 1 4 4 N 1.46501 * 109.46919 * 176.98757 * 3 2 1 5 5 C 1.34779 * 120.00025 * 83.66114 * 4 3 2 6 6 O 1.21582 * 119.99682 * 174.50921 * 5 4 3 7 7 N 1.34774 * 120.00158 * 354.50793 * 5 4 3 8 8 C 1.46496 * 120.00233 * 180.02562 * 7 5 4 9 9 C 1.50694 * 109.47347 * 179.97438 * 8 7 5 10 10 O 1.21290 * 119.99983 * 359.71917 * 9 8 7 11 11 N 1.34783 * 119.99942 * 179.97438 * 9 8 7 12 12 C 1.37101 * 119.99640 * 179.72242 * 11 9 8 13 13 H 1.08002 * 120.00415 * 359.97438 * 12 11 9 14 14 C 1.38955 * 119.99554 * 179.97438 * 12 11 9 15 15 N 1.31406 * 120.00030 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99775 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46844 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46925 * 119.99898 * 16 14 12 19 19 H 1.48497 * 109.46873 * 240.00156 * 16 14 12 20 20 C 1.46498 * 119.99612 * 263.65478 * 4 3 2 21 21 H 1.09000 * 110.26677 * 183.83915 * 20 4 3 22 22 C 1.54340 * 110.30307 * 61.66644 * 20 4 3 23 23 C 1.54349 * 102.38982 * 267.42136 * 22 20 4 24 24 C 1.51366 * 105.16838 * 333.65091 * 23 22 20 25 25 C 1.38500 * 130.39022 * 197.19343 * 24 23 22 26 26 C 1.38097 * 120.21413 * 179.97438 * 25 24 23 27 27 C 1.38249 * 119.93601 * 0.02562 * 26 25 24 28 28 C 1.38102 * 119.93807 * 0.02562 * 27 26 25 29 29 C 1.38216 * 109.75845 * 17.18984 * 24 23 22 30 30 H 1.08997 * 109.47045 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46959 * 300.00238 * 1 2 3 32 32 H 1.08995 * 109.47402 * 60.00404 * 1 2 3 33 33 H 1.08997 * 109.46890 * 239.99500 * 2 1 3 34 34 H 1.09006 * 109.47023 * 119.99820 * 2 1 3 35 35 H 1.08993 * 109.47280 * 56.98395 * 3 2 1 36 36 H 1.09007 * 109.46620 * 296.98052 * 3 2 1 37 37 H 0.97005 * 119.99960 * 359.97438 * 7 5 4 38 38 H 1.09007 * 109.47183 * 59.99819 * 8 7 5 39 39 H 1.09002 * 109.47160 * 299.99834 * 8 7 5 40 40 H 0.96994 * 120.00292 * 359.72577 * 11 9 8 41 41 H 0.97002 * 119.99929 * 179.97438 * 15 14 12 42 42 H 1.09004 * 110.82642 * 25.64146 * 22 20 4 43 43 H 1.08998 * 110.82830 * 149.19471 * 22 20 4 44 44 H 1.08998 * 110.30124 * 214.72790 * 23 22 20 45 45 H 1.08993 * 110.38623 * 92.61823 * 23 22 20 46 46 H 1.07996 * 119.88944 * 359.97438 * 25 24 23 47 47 H 1.08004 * 120.03189 * 179.97438 * 26 25 24 48 48 H 1.08007 * 120.03443 * 179.97438 * 27 26 25 49 49 H 1.07995 * 119.89259 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5032 1.4431 0.0726 5 6 4.2337 1.2941 -1.0502 6 8 5.4446 1.3942 -1.0054 7 7 3.6220 1.0343 -2.2227 8 6 4.4160 0.8718 -3.4430 9 6 3.4990 0.5901 -4.6052 10 8 2.3005 0.5258 -4.4304 11 7 4.0111 0.4046 -5.8381 12 6 3.1773 0.1426 -6.8944 13 1 2.1101 0.0846 -6.7385 14 6 3.7052 -0.0482 -8.1655 15 7 5.0036 0.0220 -8.3550 16 14 2.5690 -0.4044 -9.6049 17 1 1.1622 -0.4303 -9.1303 18 1 2.7248 0.6562 -10.6326 19 1 2.9170 -1.7215 -10.1959 20 6 4.1723 1.6056 1.3657 21 1 5.2528 1.6505 1.2287 22 6 3.7982 0.4451 2.3119 23 6 2.5821 1.0162 3.0716 24 6 2.7646 2.5185 3.0392 25 6 2.1776 3.5106 3.8069 26 6 2.5027 4.8362 3.5962 27 6 3.4166 5.1749 2.6157 28 6 4.0022 4.1871 1.8485 29 6 3.6783 2.8571 2.0590 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6333 1.9717 0.8616 36 1 1.7215 1.9404 -0.9159 37 1 2.6559 0.9540 -2.2584 38 1 5.1091 0.0399 -3.3176 39 1 4.9771 1.7863 -3.6358 40 1 4.9695 0.4563 -5.9780 41 1 5.3722 -0.1116 -9.2423 42 1 3.5186 -0.4427 1.7446 43 1 4.6159 0.2259 2.9985 44 1 2.5769 0.6579 4.1010 45 1 1.6556 0.7369 2.5700 46 1 1.4633 3.2468 4.5727 47 1 2.0429 5.6075 4.1962 48 1 3.6717 6.2111 2.4492 49 1 4.7163 4.4526 1.0830 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358277543.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:41 Heat of formation + Delta-G solvation = -59.602398 kcal Electronic energy + Delta-G solvation = -30583.234115 eV Core-core repulsion = 26509.114259 eV Total energy + Delta-G solvation = -4074.119855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.08078 -40.75927 -39.93970 -37.76405 -36.34976 -35.85721 -34.93264 -33.77569 -33.37251 -31.96403 -29.93489 -29.33102 -28.06427 -26.86330 -26.00771 -23.77620 -22.66758 -22.24011 -21.76628 -21.39768 -20.70815 -20.11983 -19.43001 -18.04430 -17.47613 -16.97023 -16.80325 -16.71563 -16.26367 -16.13627 -16.03582 -15.80662 -15.56727 -15.39039 -15.05248 -14.76269 -14.48942 -14.17841 -13.98217 -13.96642 -13.61224 -13.56770 -13.55554 -13.09143 -12.93331 -12.85566 -12.81966 -12.45192 -12.33346 -12.21689 -12.11643 -12.05704 -11.95488 -11.69093 -11.63346 -11.58719 -11.25539 -10.56886 -10.32179 -10.10350 -9.80096 -9.59068 -9.51359 -8.51669 -6.01829 0.32122 0.46822 1.34438 1.41914 1.53552 1.59426 1.87650 2.03387 2.27150 2.74755 2.92484 3.14395 3.15457 3.36787 3.60014 3.87106 4.00233 4.08383 4.14821 4.16387 4.20591 4.22996 4.31708 4.36689 4.39604 4.42579 4.46739 4.59113 4.64937 4.69742 4.78583 4.88444 4.92354 4.99472 5.07461 5.13138 5.16535 5.23547 5.27017 5.28473 5.38188 5.42997 5.50342 5.56532 5.61433 5.71578 5.88971 5.91533 6.09701 6.47013 6.85007 7.02690 7.39454 7.47168 7.93100 8.65579 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018611 B = 0.002324 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.129233 B =12046.557171 C =12491.096169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.144 4.144 3 C 0.109 3.891 4 N -0.607 5.607 5 C 0.705 3.295 6 O -0.629 6.629 7 N -0.724 5.724 8 C 0.139 3.861 9 C 0.435 3.565 10 O -0.622 6.622 11 N -0.559 5.559 12 C -0.335 4.335 13 H 0.087 0.913 14 C -0.011 4.011 15 N -0.916 5.916 16 Si 0.997 3.003 17 H -0.270 1.270 18 H -0.271 1.271 19 H -0.271 1.271 20 C 0.190 3.810 21 H 0.084 0.916 22 C -0.128 4.128 23 C -0.080 4.080 24 C -0.086 4.086 25 C -0.114 4.114 26 C -0.111 4.111 27 C -0.132 4.132 28 C -0.110 4.110 29 C -0.127 4.127 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.409 0.591 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.399 0.601 41 H 0.280 0.720 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.146 0.854 47 H 0.149 0.851 48 H 0.137 0.863 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.244 4.682 26.347 27.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.182 4.182 3 C -0.013 4.013 4 N -0.342 5.342 5 C 0.407 3.593 6 O -0.511 6.511 7 N -0.382 5.382 8 C 0.010 3.990 9 C 0.221 3.779 10 O -0.510 6.510 11 N -0.194 5.194 12 C -0.464 4.464 13 H 0.104 0.896 14 C -0.212 4.212 15 N -0.557 5.557 16 Si 0.821 3.179 17 H -0.194 1.194 18 H -0.196 1.196 19 H -0.196 1.196 20 C 0.087 3.913 21 H 0.102 0.898 22 C -0.166 4.166 23 C -0.117 4.117 24 C -0.087 4.087 25 C -0.132 4.132 26 C -0.129 4.129 27 C -0.149 4.149 28 C -0.129 4.129 29 C -0.128 4.128 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.119 0.881 36 H 0.078 0.922 37 H 0.248 0.752 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.233 0.767 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.112 0.888 44 H 0.118 0.882 45 H 0.111 0.889 46 H 0.164 0.836 47 H 0.167 0.833 48 H 0.155 0.845 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.036 4.680 26.273 27.360 hybrid contribution 0.140 0.039 -1.469 1.476 sum -5.896 4.718 24.804 25.928 Atomic orbital electron populations 1.21685 0.93701 1.02644 1.02403 1.22088 0.97481 0.96031 1.02644 1.21723 0.78381 0.97973 1.03264 1.47104 1.06507 1.75781 1.04814 1.15938 0.84839 0.77792 0.80754 1.90854 1.13486 1.60869 1.85860 1.44895 1.11426 1.76096 1.05801 1.20611 0.92614 1.03299 0.82445 1.20347 0.89023 0.83751 0.84729 1.90463 1.16952 1.58889 1.84699 1.41835 1.10173 1.61182 1.06232 1.19768 0.91985 1.47595 0.87067 0.89552 1.26144 0.97897 0.96157 1.01002 1.69689 1.12050 1.48864 1.25055 0.84806 0.77896 0.78247 0.76998 1.19385 1.19646 1.19586 1.20377 0.97311 0.92562 0.81082 0.89818 1.22737 0.99316 0.96867 0.97651 1.21197 0.98768 0.89271 1.02457 1.20821 0.95732 0.96701 0.95424 1.20948 1.00442 0.91899 0.99883 1.21421 0.97089 0.96841 0.97588 1.21286 0.97725 0.99504 0.96427 1.20803 1.00085 0.92431 0.99546 1.20722 0.99890 0.93908 0.98305 0.91772 0.90715 0.93412 0.93734 0.89598 0.88131 0.92214 0.75173 0.89019 0.89271 0.76731 0.91069 0.89673 0.88758 0.88240 0.88867 0.83621 0.83309 0.84527 0.87857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.91 71.98 0.71 -1.75 16 2 C -0.14 -2.88 5.44 30.59 0.17 -2.72 16 3 C 0.11 2.43 4.04 86.38 0.35 2.78 16 4 N -0.61 -16.28 2.42 -816.18 -1.97 -18.26 16 5 C 0.71 24.60 8.21 179.05 1.47 26.07 16 6 O -0.63 -25.78 15.71 -3.97 -0.06 -25.84 16 7 N -0.72 -26.08 5.26 -482.31 -2.54 -28.62 16 8 C 0.14 5.41 6.15 85.63 0.53 5.93 16 9 C 0.43 20.59 7.85 87.65 0.69 21.28 16 10 O -0.62 -32.65 15.24 -3.06 -0.05 -32.70 16 11 N -0.56 -28.54 5.29 -306.98 -1.62 -30.16 16 12 C -0.33 -18.60 9.68 84.04 0.81 -17.79 16 13 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 14 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 15 N -0.92 -49.12 13.05 21.66 0.28 -48.84 16 16 Si 1.00 42.00 29.55 68.60 2.03 44.03 16 17 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 18 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 19 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 20 C 0.19 4.50 3.37 44.91 0.15 4.65 16 21 H 0.08 2.42 6.97 -2.39 -0.02 2.40 16 22 C -0.13 -2.11 6.09 31.51 0.19 -1.92 16 23 C -0.08 -1.01 5.90 30.52 0.18 -0.83 16 24 C -0.09 -1.41 5.24 -19.60 -0.10 -1.51 16 25 C -0.11 -1.54 10.04 22.30 0.22 -1.32 16 26 C -0.11 -1.53 10.05 22.24 0.22 -1.31 16 27 C -0.13 -2.28 10.05 22.24 0.22 -2.05 16 28 C -0.11 -2.45 10.04 22.30 0.22 -2.23 16 29 C -0.13 -2.73 4.94 -19.60 -0.10 -2.83 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 0.93 8.14 -2.38 -0.02 0.92 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.04 1.15 7.31 -2.39 -0.02 1.13 16 34 H 0.09 1.45 4.98 -2.38 -0.01 1.43 16 35 H 0.10 1.91 5.31 -2.39 -0.01 1.90 16 36 H 0.06 1.51 6.97 -2.38 -0.02 1.50 16 37 H 0.41 14.65 4.65 -92.70 -0.43 14.22 16 38 H 0.09 3.42 8.14 -2.38 -0.02 3.40 16 39 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 40 H 0.40 19.63 7.90 -92.71 -0.73 18.90 16 41 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 42 H 0.08 1.45 6.24 -2.38 -0.01 1.44 16 43 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.09 1.04 5.95 -2.39 -0.01 1.03 16 46 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 47 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 48 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 49 H 0.10 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -68.90 391.33 2.31 -66.59 By element: Atomic # 1 Polarization: 49.64 SS G_CDS: -0.17 Total: 49.47 kcal Atomic # 6 Polarization: 17.91 SS G_CDS: 6.41 Total: 24.32 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -5.85 Total: -125.88 kcal Atomic # 8 Polarization: -58.43 SS G_CDS: -0.11 Total: -58.54 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -68.90 2.31 -66.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358277543.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.987 kcal (2) G-P(sol) polarization free energy of solvation -68.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds