Wall clock time and date at job start Wed Apr 1 2020 03:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47079 * 2 1 4 4 N 1.46494 * 109.46981 * 180.02562 * 3 2 1 5 5 C 1.46770 * 124.34998 * 269.72672 * 4 3 2 6 6 C 1.54302 * 105.56448 * 196.88349 * 5 4 3 7 7 H 1.09000 * 110.77375 * 93.01340 * 6 5 4 8 8 C 1.50696 * 111.11989 * 216.70831 * 6 5 4 9 9 O 1.21286 * 119.99828 * 17.97289 * 8 6 5 10 10 N 1.34777 * 120.00264 * 197.98309 * 8 6 5 11 11 C 1.46499 * 119.99509 * 5.28111 * 10 8 6 12 12 C 1.50703 * 109.47160 * 94.24846 * 11 10 8 13 13 H 1.07993 * 119.99781 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99766 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00443 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99796 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46922 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47276 * 119.99774 * 16 14 12 19 19 H 1.48508 * 109.47060 * 240.00115 * 16 14 12 20 20 C 1.46497 * 120.00080 * 185.28590 * 10 8 6 21 21 C 1.50700 * 109.47136 * 89.99488 * 20 10 8 22 22 C 1.38674 * 120.41565 * 89.99906 * 21 20 10 23 23 C 1.38631 * 118.41960 * 180.02562 * 22 21 20 24 24 C 1.38225 * 119.15939 * 359.97438 * 23 22 21 25 25 N 1.31856 * 120.76559 * 359.97438 * 24 23 22 26 26 C 1.31885 * 121.72615 * 359.70979 * 25 24 23 27 27 C 1.54621 * 101.84435 * 334.93946 * 6 5 4 28 28 C 1.34420 * 124.35367 * 90.02367 * 4 3 2 29 29 O 1.21280 * 124.93603 * 359.57875 * 28 4 3 30 30 H 1.09000 * 109.46797 * 299.99434 * 1 2 3 31 31 H 1.09001 * 109.47316 * 59.99438 * 1 2 3 32 32 H 1.09002 * 109.47160 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46797 * 240.00566 * 2 1 3 34 34 H 1.09001 * 109.47316 * 120.00562 * 2 1 3 35 35 H 1.09000 * 109.46844 * 60.00595 * 3 2 1 36 36 H 1.08998 * 109.47137 * 300.00080 * 3 2 1 37 37 H 1.08993 * 110.24204 * 316.01908 * 5 4 3 38 38 H 1.09006 * 110.24553 * 78.01474 * 5 4 3 39 39 H 1.09003 * 109.46864 * 214.24560 * 11 10 8 40 40 H 1.09000 * 109.47527 * 334.23909 * 11 10 8 41 41 H 0.96998 * 120.00648 * 179.97438 * 15 14 12 42 42 H 1.09004 * 109.46855 * 209.99146 * 20 10 8 43 43 H 1.08996 * 109.47288 * 329.99613 * 20 10 8 44 44 H 1.08001 * 120.79368 * 0.02771 * 22 21 20 45 45 H 1.08003 * 120.42354 * 179.97438 * 23 22 21 46 46 H 1.08003 * 119.62070 * 180.02562 * 24 23 22 47 47 H 1.07991 * 119.62008 * 180.30633 * 26 25 24 48 48 H 1.09007 * 110.48676 * 265.90061 * 27 6 5 49 49 H 1.09001 * 110.60052 * 143.31569 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3336 1.4481 1.2108 6 6 5.7414 1.8776 0.7474 7 1 5.8679 2.9559 0.8441 8 6 6.8123 1.1412 1.5101 9 8 6.5383 0.1235 2.1103 10 7 8.0745 1.6135 1.5255 11 6 8.3822 2.9016 0.8991 12 6 8.3272 3.9915 1.9384 13 1 8.0867 3.7490 2.9629 14 6 8.5839 5.2982 1.5812 15 7 8.8773 5.5934 0.3337 16 14 8.5165 6.6491 2.8696 17 1 8.1678 6.0594 4.1872 18 1 9.8412 7.3141 2.9594 19 1 7.4862 7.6476 2.4864 20 6 9.1387 0.8388 2.1685 21 6 9.7658 -0.0877 1.1588 22 6 10.8496 0.3297 0.4010 23 6 11.3937 -0.5562 -0.5160 24 6 10.8422 -1.8173 -0.6432 25 7 9.8119 -2.1804 0.0951 26 6 9.2726 -1.3663 0.9815 27 6 5.7295 1.4530 -0.7393 28 6 4.2630 1.4431 -1.1107 29 8 3.8337 1.4365 -2.2449 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6768 1.9563 0.8901 36 1 1.6767 1.9564 -0.8900 37 1 3.9392 2.1616 1.9342 38 1 4.3713 0.4497 1.6466 39 1 9.3809 2.8646 0.4639 40 1 7.6523 3.1086 0.1164 41 1 9.0576 6.5128 0.0823 42 1 9.8970 1.5175 2.5589 43 1 8.7187 0.2538 2.9867 44 1 11.2600 1.3212 0.5223 45 1 12.2379 -0.2648 -1.1234 46 1 11.2605 -2.5135 -1.3551 47 1 8.4324 -1.7008 1.5717 48 1 6.1591 0.4579 -0.8553 49 1 6.2725 2.1753 -1.3488 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413255464.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:54 Heat of formation + Delta-G solvation = -42.222780 kcal Electronic energy + Delta-G solvation = -30935.857798 eV Core-core repulsion = 26862.491579 eV Total energy + Delta-G solvation = -4073.366219 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.67465 -39.99335 -38.81815 -36.25487 -35.42360 -34.74039 -33.12777 -32.23195 -31.66815 -31.02048 -27.75233 -27.49110 -26.72830 -25.73092 -23.54602 -23.16096 -22.70628 -21.83327 -21.41611 -19.34376 -18.45632 -17.20397 -17.00355 -16.64962 -16.50127 -16.08273 -15.69130 -15.62927 -15.15555 -15.00554 -14.62419 -14.40973 -14.23873 -13.77883 -13.60603 -13.42258 -13.36685 -12.86565 -12.85086 -12.79052 -12.71712 -12.39994 -12.22014 -11.90004 -11.86203 -11.53038 -11.46800 -11.38076 -11.21454 -11.10575 -10.96656 -10.81223 -10.77333 -10.30743 -9.94188 -9.75215 -9.63389 -9.34013 -9.25536 -8.82480 -8.67448 -8.57554 -7.96181 -6.31512 -4.40258 1.24899 1.47019 2.73967 2.97249 3.13243 3.14564 3.23359 3.26244 3.63022 4.10047 4.22055 4.49272 4.61379 4.68716 4.87609 4.89913 4.96490 5.02025 5.04809 5.12102 5.13965 5.20677 5.21525 5.25725 5.34578 5.47934 5.53705 5.57953 5.63952 5.70344 5.81491 5.85573 5.87647 5.96102 6.00323 6.03084 6.10320 6.14281 6.26160 6.29494 6.49283 6.56619 6.64201 6.88795 7.01676 7.20653 7.30264 7.62406 7.88862 8.08914 8.13812 8.31445 8.60570 8.76513 9.29019 10.75030 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.006754 B = 0.004469 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4144.479837 B = 6263.258899 C = 9188.570295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.142 4.142 3 C 0.127 3.873 4 N -0.618 5.618 5 C 0.116 3.884 6 C -0.121 4.121 7 H 0.129 0.871 8 C 0.532 3.468 9 O -0.565 6.565 10 N -0.585 5.585 11 C 0.235 3.765 12 C -0.544 4.544 13 H 0.064 0.936 14 C 0.068 3.932 15 N -0.887 5.887 16 Si 0.896 3.104 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.160 3.840 21 C -0.147 4.147 22 C -0.058 4.058 23 C -0.178 4.178 24 C 0.090 3.910 25 N -0.491 5.491 26 C 0.114 3.886 27 C -0.137 4.137 28 C 0.525 3.475 29 O -0.537 6.537 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.036 0.964 40 H 0.042 0.958 41 H 0.266 0.734 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.138 0.862 45 H 0.132 0.868 46 H 0.150 0.850 47 H 0.157 0.843 48 H 0.102 0.898 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.155 -8.486 0.878 9.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.005 3.995 4 N -0.352 5.352 5 C -0.007 4.007 6 C -0.143 4.143 7 H 0.147 0.853 8 C 0.320 3.680 9 O -0.446 6.446 10 N -0.314 5.314 11 C 0.115 3.885 12 C -0.582 4.582 13 H 0.082 0.918 14 C -0.136 4.136 15 N -0.525 5.525 16 Si 0.723 3.277 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C 0.036 3.964 21 C -0.150 4.150 22 C -0.084 4.084 23 C -0.197 4.197 24 C -0.067 4.067 25 N -0.200 5.200 26 C -0.043 4.043 27 C -0.178 4.178 28 C 0.313 3.687 29 O -0.414 6.414 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.111 0.889 43 H 0.105 0.895 44 H 0.155 0.845 45 H 0.150 0.850 46 H 0.167 0.833 47 H 0.174 0.826 48 H 0.120 0.880 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.885 -9.661 0.369 10.832 hybrid contribution 0.571 1.954 0.680 2.146 sum -4.314 -7.708 1.050 8.895 Atomic orbital electron populations 1.21689 0.95148 1.01890 1.01873 1.21926 0.96051 0.97312 1.02827 1.21413 0.78049 0.96958 1.03069 1.48307 1.06075 1.73351 1.07479 1.22019 0.88510 1.03438 0.86757 1.22179 0.93525 1.04009 0.94565 0.85336 1.19893 0.83405 0.84289 0.80453 1.90592 1.81831 1.26231 1.45923 1.48178 1.06048 1.21790 1.55359 1.19541 0.97833 0.77487 0.93602 1.21506 1.49308 0.91657 0.95765 0.91810 1.24933 0.94544 0.98679 0.95469 1.69917 1.46239 1.19844 1.16522 0.86473 0.77898 0.81677 0.81653 1.19590 1.20808 1.20784 1.20143 0.90522 0.93017 0.92700 1.21423 0.96935 0.96534 1.00079 1.21651 0.94109 0.99592 0.93066 1.22119 1.02021 0.95369 1.00232 1.22710 0.92425 0.94733 0.96876 1.67708 1.09959 1.36539 1.05792 1.22822 0.97575 0.89775 0.94128 1.22232 0.94891 1.04917 0.95731 1.20817 0.89063 0.74574 0.84265 1.90689 1.78677 1.50892 1.21172 0.92580 0.92562 0.92506 0.91603 0.91538 0.90349 0.90133 0.90054 0.89168 0.94626 0.93963 0.92403 0.88948 0.89460 0.84450 0.85042 0.83271 0.82558 0.88006 0.87020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.14 -1.53 6.26 -26.73 -0.17 -1.70 16 3 C 0.13 1.49 5.93 -4.04 -0.02 1.47 16 4 N -0.62 -8.86 2.93 -172.53 -0.51 -9.37 16 5 C 0.12 1.63 6.84 -3.21 -0.02 1.60 16 6 C -0.12 -1.95 2.47 -90.24 -0.22 -2.18 16 7 H 0.13 2.24 6.87 -51.93 -0.36 1.89 16 8 C 0.53 9.47 6.82 -10.99 -0.07 9.39 16 9 O -0.56 -10.62 14.98 5.55 0.08 -10.54 16 10 N -0.58 -10.63 2.44 -176.43 -0.43 -11.07 16 11 C 0.23 4.92 4.85 -5.19 -0.03 4.89 16 12 C -0.54 -12.76 9.38 -34.44 -0.32 -13.09 16 13 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 14 C 0.07 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -22.85 13.29 55.43 0.74 -22.11 16 16 Si 0.90 19.26 29.54 -169.99 -5.02 14.24 16 17 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 C 0.16 2.58 5.62 -5.20 -0.03 2.55 16 21 C -0.15 -2.24 5.48 -104.48 -0.57 -2.81 16 22 C -0.06 -0.82 9.86 -39.28 -0.39 -1.20 16 23 C -0.18 -2.23 10.11 -39.44 -0.40 -2.63 16 24 C 0.09 1.18 11.18 -17.55 -0.20 0.98 16 25 N -0.49 -7.66 10.36 -13.25 -0.14 -7.80 16 26 C 0.11 1.79 10.86 -17.55 -0.19 1.60 16 27 C -0.14 -2.19 6.14 -26.75 -0.16 -2.36 16 28 C 0.52 8.85 8.02 -10.86 -0.09 8.76 16 29 O -0.54 -10.64 17.59 5.56 0.10 -10.54 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 1.00 7.93 -51.93 -0.41 0.59 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.09 1.32 6.85 -51.93 -0.36 0.96 16 39 H 0.04 0.79 8.10 -51.93 -0.42 0.37 16 40 H 0.04 0.92 5.54 -51.93 -0.29 0.63 16 41 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 42 H 0.09 1.46 8.03 -51.93 -0.42 1.05 16 43 H 0.09 1.38 7.31 -51.93 -0.38 1.00 16 44 H 0.14 1.88 8.06 -52.49 -0.42 1.45 16 45 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 46 H 0.15 1.50 8.06 -52.48 -0.42 1.08 16 47 H 0.16 2.47 7.91 -52.49 -0.42 2.05 16 48 H 0.10 1.63 7.89 -51.92 -0.41 1.22 16 49 H 0.11 1.81 7.67 -51.93 -0.40 1.41 16 LS Contribution 409.03 15.07 6.16 6.16 Total: -1.00 -29.01 409.03 -9.25 -38.26 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -7.62 Total: 6.81 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -2.61 Total: 5.95 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: -0.34 Total: -50.34 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: 0.18 Total: -21.08 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -29.01 -9.25 -38.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413255464.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.962 kcal (2) G-P(sol) polarization free energy of solvation -29.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds