Wall clock time and date at job start Wed Apr 1 2020 03:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47079 * 2 1 4 4 N 1.46494 * 109.46981 * 180.02562 * 3 2 1 5 5 C 1.46770 * 124.34998 * 269.72672 * 4 3 2 6 6 C 1.54302 * 105.56448 * 196.88349 * 5 4 3 7 7 H 1.09000 * 110.77375 * 93.01340 * 6 5 4 8 8 C 1.50696 * 111.11989 * 216.70831 * 6 5 4 9 9 O 1.21286 * 119.99828 * 17.97289 * 8 6 5 10 10 N 1.34777 * 120.00264 * 197.98309 * 8 6 5 11 11 C 1.46499 * 119.99509 * 5.28111 * 10 8 6 12 12 C 1.50703 * 109.47160 * 94.24846 * 11 10 8 13 13 H 1.07993 * 119.99781 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99766 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00443 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99796 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46922 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47276 * 119.99774 * 16 14 12 19 19 H 1.48508 * 109.47060 * 240.00115 * 16 14 12 20 20 C 1.46497 * 120.00080 * 185.28590 * 10 8 6 21 21 C 1.50700 * 109.47136 * 89.99488 * 20 10 8 22 22 C 1.38674 * 120.41565 * 89.99906 * 21 20 10 23 23 C 1.38631 * 118.41960 * 180.02562 * 22 21 20 24 24 C 1.38225 * 119.15939 * 359.97438 * 23 22 21 25 25 N 1.31856 * 120.76559 * 359.97438 * 24 23 22 26 26 C 1.31885 * 121.72615 * 359.70979 * 25 24 23 27 27 C 1.54621 * 101.84435 * 334.93946 * 6 5 4 28 28 C 1.34420 * 124.35367 * 90.02367 * 4 3 2 29 29 O 1.21280 * 124.93603 * 359.57875 * 28 4 3 30 30 H 1.09000 * 109.46797 * 299.99434 * 1 2 3 31 31 H 1.09001 * 109.47316 * 59.99438 * 1 2 3 32 32 H 1.09002 * 109.47160 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46797 * 240.00566 * 2 1 3 34 34 H 1.09001 * 109.47316 * 120.00562 * 2 1 3 35 35 H 1.09000 * 109.46844 * 60.00595 * 3 2 1 36 36 H 1.08998 * 109.47137 * 300.00080 * 3 2 1 37 37 H 1.08993 * 110.24204 * 316.01908 * 5 4 3 38 38 H 1.09006 * 110.24553 * 78.01474 * 5 4 3 39 39 H 1.09003 * 109.46864 * 214.24560 * 11 10 8 40 40 H 1.09000 * 109.47527 * 334.23909 * 11 10 8 41 41 H 0.96998 * 120.00648 * 179.97438 * 15 14 12 42 42 H 1.09004 * 109.46855 * 209.99146 * 20 10 8 43 43 H 1.08996 * 109.47288 * 329.99613 * 20 10 8 44 44 H 1.08001 * 120.79368 * 0.02771 * 22 21 20 45 45 H 1.08003 * 120.42354 * 179.97438 * 23 22 21 46 46 H 1.08003 * 119.62070 * 180.02562 * 24 23 22 47 47 H 1.07991 * 119.62008 * 180.30633 * 26 25 24 48 48 H 1.09007 * 110.48676 * 265.90061 * 27 6 5 49 49 H 1.09001 * 110.60052 * 143.31569 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3336 1.4481 1.2108 6 6 5.7414 1.8776 0.7474 7 1 5.8679 2.9559 0.8441 8 6 6.8123 1.1412 1.5101 9 8 6.5383 0.1235 2.1103 10 7 8.0745 1.6135 1.5255 11 6 8.3822 2.9016 0.8991 12 6 8.3272 3.9915 1.9384 13 1 8.0867 3.7490 2.9629 14 6 8.5839 5.2982 1.5812 15 7 8.8773 5.5934 0.3337 16 14 8.5165 6.6491 2.8696 17 1 8.1678 6.0594 4.1872 18 1 9.8412 7.3141 2.9594 19 1 7.4862 7.6476 2.4864 20 6 9.1387 0.8388 2.1685 21 6 9.7658 -0.0877 1.1588 22 6 10.8496 0.3297 0.4010 23 6 11.3937 -0.5562 -0.5160 24 6 10.8422 -1.8173 -0.6432 25 7 9.8119 -2.1804 0.0951 26 6 9.2726 -1.3663 0.9815 27 6 5.7295 1.4530 -0.7393 28 6 4.2630 1.4431 -1.1107 29 8 3.8337 1.4365 -2.2449 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6768 1.9563 0.8901 36 1 1.6767 1.9564 -0.8900 37 1 3.9392 2.1616 1.9342 38 1 4.3713 0.4497 1.6466 39 1 9.3809 2.8646 0.4639 40 1 7.6523 3.1086 0.1164 41 1 9.0576 6.5128 0.0823 42 1 9.8970 1.5175 2.5589 43 1 8.7187 0.2538 2.9867 44 1 11.2600 1.3212 0.5223 45 1 12.2379 -0.2648 -1.1234 46 1 11.2605 -2.5135 -1.3551 47 1 8.4324 -1.7008 1.5717 48 1 6.1591 0.4579 -0.8553 49 1 6.2725 2.1753 -1.3488 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413255464.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:53 Heat of formation + Delta-G solvation = -56.943256 kcal Electronic energy + Delta-G solvation = -30936.496125 eV Core-core repulsion = 26862.491579 eV Total energy + Delta-G solvation = -4074.004546 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.00201 -41.16191 -40.19003 -37.58538 -36.89855 -35.80345 -34.77272 -33.57236 -32.78941 -32.17451 -29.33286 -28.86932 -27.90413 -26.86012 -25.07854 -24.38456 -24.03157 -22.76722 -22.62919 -20.58134 -19.89374 -18.72366 -18.43572 -17.91544 -17.87852 -17.24959 -17.06888 -16.83607 -16.48627 -16.43494 -15.95235 -15.70673 -15.44470 -14.84416 -14.78848 -14.68404 -14.61891 -14.25091 -14.19458 -13.98078 -13.94854 -13.82128 -13.41372 -13.08095 -13.04915 -12.90103 -12.75963 -12.61584 -12.50883 -12.48877 -12.36637 -12.20710 -11.97873 -11.66720 -11.66312 -11.16401 -10.86454 -10.67683 -10.55273 -10.43257 -9.95189 -9.77388 -9.49691 -8.18286 -6.32171 0.13521 0.34762 1.38623 1.42652 1.47740 1.55623 1.61291 1.91995 2.25023 2.45156 2.94255 3.13685 3.19590 3.41882 3.54623 3.65523 3.83989 3.91299 3.94509 3.99113 4.03437 4.10082 4.12018 4.20757 4.33578 4.44225 4.50341 4.52711 4.58939 4.62977 4.71551 4.72403 4.79160 4.86985 4.89317 4.90296 4.99544 5.13963 5.17056 5.19695 5.27925 5.32650 5.37800 5.54286 5.66755 5.78739 5.80947 5.95826 6.07184 6.53293 6.82185 7.00866 7.02212 7.23320 7.41543 8.87111 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.006754 B = 0.004469 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4144.479837 B = 6263.258899 C = 9188.570295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.120 3.880 4 N -0.610 5.610 5 C 0.123 3.877 6 C -0.117 4.117 7 H 0.116 0.884 8 C 0.532 3.468 9 O -0.574 6.574 10 N -0.587 5.587 11 C 0.251 3.749 12 C -0.544 4.544 13 H 0.059 0.941 14 C 0.026 3.974 15 N -0.917 5.917 16 Si 0.951 3.049 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.283 1.283 20 C 0.161 3.839 21 C -0.155 4.155 22 C -0.068 4.068 23 C -0.168 4.168 24 C 0.088 3.912 25 N -0.513 5.513 26 C 0.103 3.897 27 C -0.131 4.131 28 C 0.520 3.480 29 O -0.572 6.572 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.041 0.959 34 H 0.068 0.932 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.023 0.977 40 H 0.034 0.966 41 H 0.266 0.734 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.140 0.860 45 H 0.165 0.835 46 H 0.183 0.817 47 H 0.148 0.852 48 H 0.100 0.900 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.350 -8.633 1.613 9.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C -0.001 4.001 4 N -0.343 5.343 5 C 0.000 4.000 6 C -0.139 4.139 7 H 0.134 0.866 8 C 0.320 3.680 9 O -0.455 6.455 10 N -0.315 5.315 11 C 0.131 3.869 12 C -0.583 4.583 13 H 0.077 0.923 14 C -0.174 4.174 15 N -0.557 5.557 16 Si 0.777 3.223 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.209 1.209 20 C 0.038 3.962 21 C -0.158 4.158 22 C -0.094 4.094 23 C -0.188 4.188 24 C -0.069 4.069 25 N -0.222 5.222 26 C -0.054 4.054 27 C -0.171 4.171 28 C 0.308 3.692 29 O -0.452 6.452 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.126 0.874 36 H 0.091 0.909 37 H 0.123 0.877 38 H 0.108 0.892 39 H 0.041 0.959 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.106 0.894 44 H 0.158 0.842 45 H 0.182 0.818 46 H 0.200 0.800 47 H 0.165 0.835 48 H 0.119 0.881 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.096 -9.826 1.151 11.128 hybrid contribution 0.680 1.932 0.445 2.095 sum -4.416 -7.895 1.596 9.185 Atomic orbital electron populations 1.21661 0.93140 1.02639 1.02665 1.21868 0.97746 0.96241 1.01751 1.21698 0.76265 0.97960 1.04150 1.48410 1.07239 1.71860 1.06746 1.22028 0.87208 1.03972 0.86772 1.22093 0.94412 1.02963 0.94406 0.86554 1.20099 0.83476 0.84183 0.80284 1.90588 1.81923 1.26616 1.46388 1.48126 1.06831 1.21183 1.55405 1.19164 0.96747 0.78160 0.92850 1.21716 1.48324 0.92344 0.95903 0.92316 1.25554 0.94494 1.00558 0.96831 1.70004 1.47526 1.20167 1.17963 0.85614 0.77617 0.79328 0.79759 1.19202 1.20810 1.20853 1.20182 0.90048 0.92959 0.92997 1.21285 0.97706 0.96285 1.00534 1.21815 0.93982 1.00159 0.93454 1.22464 1.02292 0.94614 0.99396 1.23305 0.91436 0.95621 0.96537 1.67713 1.11125 1.36968 1.06358 1.22705 0.97839 0.90092 0.94723 1.22135 0.94716 1.04617 0.95638 1.20892 0.89493 0.74461 0.84329 1.90664 1.79200 1.52857 1.22523 0.90984 0.92563 0.91826 0.93978 0.91290 0.87412 0.90861 0.87662 0.89243 0.95883 0.94829 0.92463 0.88921 0.89364 0.84233 0.81784 0.79989 0.83452 0.88141 0.87649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.91 71.98 0.71 -1.45 16 2 C -0.14 -2.80 6.26 30.60 0.19 -2.61 16 3 C 0.12 2.64 5.93 86.38 0.51 3.16 16 4 N -0.61 -16.99 2.93 -818.34 -2.40 -19.39 16 5 C 0.12 3.29 6.84 86.77 0.59 3.89 16 6 C -0.12 -3.76 2.47 -10.55 -0.03 -3.78 16 7 H 0.12 4.07 6.87 -2.39 -0.02 4.05 16 8 C 0.53 18.88 6.82 87.66 0.60 19.48 16 9 O -0.57 -21.42 14.98 -3.05 -0.05 -21.47 16 10 N -0.59 -21.46 2.44 -830.50 -2.03 -23.49 16 11 C 0.25 10.63 4.85 85.63 0.42 11.05 16 12 C -0.54 -25.48 9.38 25.60 0.24 -25.24 16 13 H 0.06 2.77 7.81 -2.91 -0.02 2.75 16 14 C 0.03 1.28 5.46 84.65 0.46 1.74 16 15 N -0.92 -47.36 13.29 21.45 0.28 -47.08 16 16 Si 0.95 39.09 29.54 68.60 2.03 41.12 16 17 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 18 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 19 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 20 C 0.16 5.24 5.62 85.63 0.48 5.72 16 21 C -0.15 -4.73 5.48 -19.77 -0.11 -4.84 16 22 C -0.07 -1.86 9.86 22.47 0.22 -1.64 16 23 C -0.17 -3.85 10.11 22.36 0.23 -3.63 16 24 C 0.09 2.13 11.18 84.69 0.95 3.07 16 25 N -0.51 -15.57 10.36 -195.85 -2.03 -17.60 16 26 C 0.10 3.24 10.86 84.67 0.92 4.16 16 27 C -0.13 -4.25 6.14 30.58 0.19 -4.06 16 28 C 0.52 17.69 8.02 87.90 0.71 18.40 16 29 O -0.57 -23.12 17.59 -3.03 -0.05 -23.18 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.07 1.76 7.93 -2.39 -0.02 1.74 16 37 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.09 2.49 6.85 -2.38 -0.02 2.47 16 39 H 0.02 1.04 8.10 -2.39 -0.02 1.02 16 40 H 0.03 1.49 5.54 -2.39 -0.01 1.48 16 41 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 42 H 0.09 2.95 8.03 -2.38 -0.02 2.93 16 43 H 0.09 2.82 7.31 -2.39 -0.02 2.80 16 44 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 45 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 46 H 0.18 3.08 8.06 -2.91 -0.02 3.05 16 47 H 0.15 4.77 7.91 -2.92 -0.02 4.75 16 48 H 0.10 3.28 7.89 -2.38 -0.02 3.26 16 49 H 0.11 3.54 7.67 -2.39 -0.02 3.52 16 Total: -1.00 -61.81 409.03 3.98 -57.83 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.94 Total: 29.82 kcal Atomic # 6 Polarization: 16.15 SS G_CDS: 7.28 Total: 23.43 kcal Atomic # 7 Polarization: -101.38 SS G_CDS: -6.17 Total: -107.55 kcal Atomic # 8 Polarization: -44.55 SS G_CDS: -0.10 Total: -44.65 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Total: -61.81 3.98 -57.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413255464.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.884 kcal (2) G-P(sol) polarization free energy of solvation -61.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds