Wall clock time and date at job start Wed Apr 1 2020 03:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 N 1.46500 * 109.46998 * 179.97438 * 3 2 1 5 5 C 1.46762 * 124.35153 * 89.99716 * 4 3 2 6 6 C 1.54472 * 105.47547 * 162.98572 * 5 4 3 7 7 H 1.08997 * 110.97349 * 267.26422 * 6 5 4 8 8 C 1.50697 * 110.97090 * 143.53555 * 6 5 4 9 9 O 1.21284 * 120.00291 * 0.02562 * 8 6 5 10 10 N 1.34780 * 120.00159 * 179.97438 * 8 6 5 11 11 C 1.46496 * 120.00060 * 0.02562 * 10 8 6 12 12 C 1.50700 * 109.47363 * 89.99457 * 11 10 8 13 13 H 1.08006 * 120.00001 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00246 * 179.97438 * 12 11 10 15 15 N 1.31521 * 120.00213 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00116 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47356 * 90.00290 * 16 14 12 18 18 H 1.48497 * 109.47189 * 210.00216 * 16 14 12 19 19 H 1.48498 * 109.47192 * 330.00188 * 16 14 12 20 20 C 1.46497 * 120.00073 * 179.97438 * 10 8 6 21 21 C 1.50701 * 109.47252 * 90.00165 * 20 10 8 22 22 C 1.38675 * 120.42032 * 269.72286 * 21 20 10 23 23 C 1.38634 * 118.41863 * 179.77545 * 22 21 20 24 24 C 1.38221 * 119.16133 * 0.47859 * 23 22 21 25 25 N 1.31860 * 120.76633 * 359.75992 * 24 23 22 26 26 C 1.31886 * 121.72156 * 0.02562 * 25 24 23 27 27 C 1.54629 * 101.76491 * 25.41913 * 6 5 4 28 28 C 1.34427 * 124.34965 * 269.70266 * 4 3 2 29 29 O 1.21278 * 124.93859 * 0.38965 * 28 4 3 30 30 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 31 31 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 32 32 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 34 34 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 35 35 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 36 36 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 37 37 H 1.09005 * 110.24554 * 281.98783 * 5 4 3 38 38 H 1.08997 * 110.24452 * 43.98250 * 5 4 3 39 39 H 1.08996 * 109.47266 * 209.99632 * 11 10 8 40 40 H 1.08996 * 109.46916 * 329.99829 * 11 10 8 41 41 H 0.96995 * 120.00499 * 179.97438 * 15 14 12 42 42 H 1.08998 * 109.47439 * 210.00233 * 20 10 8 43 43 H 1.08999 * 109.47396 * 330.00804 * 20 10 8 44 44 H 1.07993 * 120.78731 * 0.02562 * 22 21 20 45 45 H 1.08000 * 120.41876 * 180.26350 * 23 22 21 46 46 H 1.08001 * 119.62123 * 179.74653 * 24 23 22 47 47 H 1.08003 * 119.61486 * 179.97438 * 26 25 24 48 48 H 1.08993 * 110.48787 * 93.88069 * 27 6 5 49 49 H 1.09004 * 110.48551 * 216.52724 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.3335 1.4425 -1.2107 6 6 5.7412 1.8783 -0.7472 7 1 5.8673 2.9566 -0.8439 8 6 6.8121 1.1423 -1.5102 9 8 6.5042 0.3324 -2.3589 10 7 8.1122 1.3846 -1.2502 11 6 8.4842 2.3632 -0.2255 12 6 8.6067 1.6722 1.1082 13 1 8.4259 0.6101 1.1847 14 6 8.9505 2.3955 2.2304 15 7 9.1712 3.6887 2.1372 16 14 9.1029 1.5388 3.8834 17 1 10.4974 1.0625 4.0674 18 1 8.7583 2.4921 4.9686 19 1 8.1743 0.3809 3.9283 20 6 9.1533 0.6687 -1.9916 21 6 9.5157 1.4490 -3.2289 22 6 8.8472 1.2228 -4.4226 23 6 9.2111 1.9674 -5.5340 24 6 10.2277 2.8967 -5.4186 25 7 10.8451 3.0818 -4.2683 26 6 10.5225 2.3947 -3.1897 27 6 5.7294 1.4529 0.7394 28 6 4.2629 1.4487 1.1108 29 8 3.8335 1.4479 2.2450 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 1.6764 1.9564 0.8900 37 1 4.3712 0.4420 -1.6417 38 1 3.9391 2.1525 -1.9376 39 1 9.4391 2.8187 -0.4877 40 1 7.7175 3.1356 -0.1654 41 1 9.4127 4.1977 2.9268 42 1 10.0357 0.5560 -1.3617 43 1 8.7835 -0.3157 -2.2784 44 1 8.0591 0.4870 -4.4839 45 1 8.7089 1.8206 -6.4788 46 1 10.5200 3.4779 -6.2807 47 1 11.0510 2.5736 -2.2650 48 1 6.1590 0.4579 0.8549 49 1 6.2719 2.1767 1.3476 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413255465.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:58 Heat of formation + Delta-G solvation = -40.180344 kcal Electronic energy + Delta-G solvation = -31087.376962 eV Core-core repulsion = 27014.099310 eV Total energy + Delta-G solvation = -4073.277652 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.58882 -39.96637 -38.76933 -36.11417 -35.39958 -34.71525 -33.15901 -32.21840 -31.60502 -30.89405 -27.69508 -27.41191 -26.58051 -25.71131 -23.50284 -23.09353 -22.73431 -21.76699 -21.38318 -19.18529 -18.43439 -17.20330 -16.83666 -16.66479 -16.41382 -16.04134 -15.73403 -15.49976 -15.18854 -14.89638 -14.53491 -14.37847 -14.08633 -13.68316 -13.63523 -13.31984 -13.23618 -12.96662 -12.83387 -12.68016 -12.45542 -12.31860 -12.18098 -11.92556 -11.78167 -11.66819 -11.39940 -11.20466 -11.08258 -10.99319 -10.81118 -10.76021 -10.74406 -10.24697 -9.89496 -9.68917 -9.56524 -9.28886 -9.20607 -8.80861 -8.61511 -8.48666 -7.96193 -6.26759 -4.34114 1.23982 1.46527 2.95731 3.08692 3.17051 3.22326 3.31692 3.35356 3.65675 4.10974 4.28828 4.61377 4.64595 4.75242 4.91544 4.95177 4.98649 5.07828 5.09402 5.13222 5.17972 5.20217 5.25864 5.34230 5.38210 5.50505 5.57369 5.63430 5.66933 5.74508 5.82598 5.88777 5.99528 6.00106 6.03708 6.08561 6.18469 6.29116 6.34423 6.49391 6.57130 6.67312 6.78179 6.87759 7.04698 7.31680 7.36352 7.66411 7.92189 8.08804 8.13789 8.50862 8.62880 8.78162 9.33437 10.79458 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007835 B = 0.004339 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3572.854386 B = 6452.097215 C = 9438.287484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.143 4.143 3 C 0.127 3.873 4 N -0.626 5.626 5 C 0.119 3.881 6 C -0.113 4.113 7 H 0.111 0.889 8 C 0.531 3.469 9 O -0.569 6.569 10 N -0.585 5.585 11 C 0.235 3.765 12 C -0.541 4.541 13 H 0.064 0.936 14 C 0.071 3.929 15 N -0.886 5.886 16 Si 0.890 3.110 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.270 1.270 20 C 0.161 3.839 21 C -0.146 4.146 22 C -0.056 4.056 23 C -0.182 4.182 24 C 0.090 3.910 25 N -0.489 5.489 26 C 0.115 3.885 27 C -0.129 4.129 28 C 0.517 3.483 29 O -0.536 6.536 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.038 0.962 40 H 0.039 0.961 41 H 0.267 0.733 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.138 0.862 45 H 0.129 0.871 46 H 0.150 0.850 47 H 0.158 0.842 48 H 0.107 0.893 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.226 -3.397 -11.452 13.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.005 3.995 4 N -0.360 5.360 5 C -0.004 4.004 6 C -0.135 4.135 7 H 0.129 0.871 8 C 0.319 3.681 9 O -0.450 6.450 10 N -0.313 5.313 11 C 0.116 3.884 12 C -0.579 4.579 13 H 0.082 0.918 14 C -0.134 4.134 15 N -0.523 5.523 16 Si 0.717 3.283 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.194 1.194 20 C 0.037 3.963 21 C -0.149 4.149 22 C -0.083 4.083 23 C -0.202 4.202 24 C -0.067 4.067 25 N -0.198 5.198 26 C -0.042 4.042 27 C -0.169 4.169 28 C 0.306 3.694 29 O -0.413 6.413 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.156 0.844 45 H 0.147 0.853 46 H 0.167 0.833 47 H 0.175 0.825 48 H 0.125 0.875 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.941 -2.999 -11.095 13.426 hybrid contribution -0.486 -0.828 0.850 1.282 sum -7.427 -3.827 -10.245 13.220 Atomic orbital electron populations 1.21687 0.95259 1.01826 1.01804 1.21926 0.95939 0.97484 1.02782 1.21366 0.78537 0.96789 1.02773 1.48410 1.05814 1.74201 1.07611 1.21955 0.88743 1.03084 0.86614 1.22045 0.93097 1.02024 0.96326 0.87130 1.19957 0.83676 0.82175 0.82332 1.90580 1.82463 1.36727 1.35253 1.48215 1.03933 1.41786 1.37406 1.19546 0.97313 0.86776 0.84766 1.21410 1.48895 0.95505 0.92102 0.91807 1.24880 0.94611 0.94739 0.99132 1.69903 1.45812 1.06183 1.30413 0.86595 0.78537 0.79791 0.83334 1.20546 1.20972 1.19431 1.20155 0.92458 0.94370 0.89338 1.21418 0.97420 0.99456 0.96641 1.21661 0.97227 0.97545 0.91818 1.22108 0.99730 0.98627 0.99706 1.22705 0.92714 0.95709 0.95583 1.67715 1.27914 1.24656 0.99471 1.22824 0.94117 0.90627 0.96612 1.22522 0.92834 1.06668 0.94861 1.21335 0.89752 0.74157 0.84130 1.90674 1.78838 1.50497 1.21259 0.92566 0.92673 0.92566 0.91673 0.91557 0.90704 0.90242 0.89484 0.90672 0.94399 0.94330 0.92317 0.88867 0.89717 0.84441 0.85271 0.83307 0.82483 0.87523 0.84629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.14 -1.60 6.26 -26.73 -0.17 -1.77 16 3 C 0.13 1.55 5.93 -4.04 -0.02 1.52 16 4 N -0.63 -9.29 2.93 -172.42 -0.51 -9.80 16 5 C 0.12 1.66 6.71 -3.13 -0.02 1.64 16 6 C -0.11 -1.82 2.54 -90.14 -0.23 -2.05 16 7 H 0.11 1.73 7.25 -51.93 -0.38 1.36 16 8 C 0.53 9.30 6.95 -10.99 -0.08 9.22 16 9 O -0.57 -10.43 14.74 5.55 0.08 -10.35 16 10 N -0.58 -10.46 2.44 -176.44 -0.43 -10.89 16 11 C 0.24 4.87 4.71 -5.20 -0.02 4.84 16 12 C -0.54 -12.36 6.39 -34.44 -0.22 -12.58 16 13 H 0.06 1.48 7.53 -52.48 -0.39 1.09 16 14 C 0.07 1.73 5.44 -17.82 -0.10 1.63 16 15 N -0.89 -22.86 13.29 55.43 0.74 -22.13 16 16 Si 0.89 19.89 29.54 -169.99 -5.02 14.87 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 C 0.16 2.55 5.56 -5.19 -0.03 2.52 16 21 C -0.15 -2.20 5.48 -104.48 -0.57 -2.77 16 22 C -0.06 -0.78 9.86 -39.27 -0.39 -1.16 16 23 C -0.18 -2.20 10.11 -39.44 -0.40 -2.60 16 24 C 0.09 1.15 11.18 -17.55 -0.20 0.96 16 25 N -0.49 -7.55 10.36 -13.25 -0.14 -7.69 16 26 C 0.12 1.79 10.86 -17.55 -0.19 1.60 16 27 C -0.13 -2.35 4.47 -26.74 -0.12 -2.47 16 28 C 0.52 9.50 8.02 -10.86 -0.09 9.41 16 29 O -0.54 -11.64 17.59 5.56 0.10 -11.54 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 1.03 7.92 -51.93 -0.41 0.62 16 37 H 0.09 1.27 6.96 -51.93 -0.36 0.91 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 40 H 0.04 0.84 6.11 -51.93 -0.32 0.52 16 41 H 0.27 6.70 8.31 -40.82 -0.34 6.37 16 42 H 0.09 1.44 8.02 -51.93 -0.42 1.03 16 43 H 0.08 1.32 7.37 -51.93 -0.38 0.94 16 44 H 0.14 1.89 7.71 -52.49 -0.40 1.49 16 45 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 46 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 47 H 0.16 2.38 8.06 -52.48 -0.42 1.95 16 48 H 0.11 2.03 7.47 -51.93 -0.39 1.64 16 49 H 0.14 2.81 6.38 -51.93 -0.33 2.48 16 LS Contribution 402.88 15.07 6.07 6.07 Total: -1.00 -28.66 402.88 -9.15 -37.81 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -7.57 Total: 6.64 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -2.47 Total: 7.01 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.34 Total: -50.51 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: 0.18 Total: -21.88 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -28.66 -9.15 -37.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413255465.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.372 kcal (2) G-P(sol) polarization free energy of solvation -28.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds