Wall clock time and date at job start Wed Apr 1 2020 03:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 N 1.46500 * 109.46998 * 179.97438 * 3 2 1 5 5 C 1.46762 * 124.35153 * 89.99716 * 4 3 2 6 6 C 1.54472 * 105.47547 * 162.98572 * 5 4 3 7 7 H 1.08997 * 110.97349 * 267.26422 * 6 5 4 8 8 C 1.50697 * 110.97090 * 143.53555 * 6 5 4 9 9 O 1.21284 * 120.00291 * 0.02562 * 8 6 5 10 10 N 1.34780 * 120.00159 * 179.97438 * 8 6 5 11 11 C 1.46496 * 120.00060 * 0.02562 * 10 8 6 12 12 C 1.50700 * 109.47363 * 89.99457 * 11 10 8 13 13 H 1.08006 * 120.00001 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00246 * 179.97438 * 12 11 10 15 15 N 1.31521 * 120.00213 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00116 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47356 * 90.00290 * 16 14 12 18 18 H 1.48497 * 109.47189 * 210.00216 * 16 14 12 19 19 H 1.48498 * 109.47192 * 330.00188 * 16 14 12 20 20 C 1.46497 * 120.00073 * 179.97438 * 10 8 6 21 21 C 1.50701 * 109.47252 * 90.00165 * 20 10 8 22 22 C 1.38675 * 120.42032 * 269.72286 * 21 20 10 23 23 C 1.38634 * 118.41863 * 179.77545 * 22 21 20 24 24 C 1.38221 * 119.16133 * 0.47859 * 23 22 21 25 25 N 1.31860 * 120.76633 * 359.75992 * 24 23 22 26 26 C 1.31886 * 121.72156 * 0.02562 * 25 24 23 27 27 C 1.54629 * 101.76491 * 25.41913 * 6 5 4 28 28 C 1.34427 * 124.34965 * 269.70266 * 4 3 2 29 29 O 1.21278 * 124.93859 * 0.38965 * 28 4 3 30 30 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 31 31 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 32 32 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 34 34 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 35 35 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 36 36 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 37 37 H 1.09005 * 110.24554 * 281.98783 * 5 4 3 38 38 H 1.08997 * 110.24452 * 43.98250 * 5 4 3 39 39 H 1.08996 * 109.47266 * 209.99632 * 11 10 8 40 40 H 1.08996 * 109.46916 * 329.99829 * 11 10 8 41 41 H 0.96995 * 120.00499 * 179.97438 * 15 14 12 42 42 H 1.08998 * 109.47439 * 210.00233 * 20 10 8 43 43 H 1.08999 * 109.47396 * 330.00804 * 20 10 8 44 44 H 1.07993 * 120.78731 * 0.02562 * 22 21 20 45 45 H 1.08000 * 120.41876 * 180.26350 * 23 22 21 46 46 H 1.08001 * 119.62123 * 179.74653 * 24 23 22 47 47 H 1.08003 * 119.61486 * 179.97438 * 26 25 24 48 48 H 1.08993 * 110.48787 * 93.88069 * 27 6 5 49 49 H 1.09004 * 110.48551 * 216.52724 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.3335 1.4425 -1.2107 6 6 5.7412 1.8783 -0.7472 7 1 5.8673 2.9566 -0.8439 8 6 6.8121 1.1423 -1.5102 9 8 6.5042 0.3324 -2.3589 10 7 8.1122 1.3846 -1.2502 11 6 8.4842 2.3632 -0.2255 12 6 8.6067 1.6722 1.1082 13 1 8.4259 0.6101 1.1847 14 6 8.9505 2.3955 2.2304 15 7 9.1712 3.6887 2.1372 16 14 9.1029 1.5388 3.8834 17 1 10.4974 1.0625 4.0674 18 1 8.7583 2.4921 4.9686 19 1 8.1743 0.3809 3.9283 20 6 9.1533 0.6687 -1.9916 21 6 9.5157 1.4490 -3.2289 22 6 8.8472 1.2228 -4.4226 23 6 9.2111 1.9674 -5.5340 24 6 10.2277 2.8967 -5.4186 25 7 10.8451 3.0818 -4.2683 26 6 10.5225 2.3947 -3.1897 27 6 5.7294 1.4529 0.7394 28 6 4.2629 1.4487 1.1108 29 8 3.8335 1.4479 2.2450 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 1.6764 1.9564 0.8900 37 1 4.3712 0.4420 -1.6417 38 1 3.9391 2.1525 -1.9376 39 1 9.4391 2.8187 -0.4877 40 1 7.7175 3.1356 -0.1654 41 1 9.4127 4.1977 2.9268 42 1 10.0357 0.5560 -1.3617 43 1 8.7835 -0.3157 -2.2784 44 1 8.0591 0.4870 -4.4839 45 1 8.7089 1.8206 -6.4788 46 1 10.5200 3.4779 -6.2807 47 1 11.0510 2.5736 -2.2650 48 1 6.1590 0.4579 0.8549 49 1 6.2719 2.1767 1.3476 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413255465.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:57 Heat of formation + Delta-G solvation = -55.193631 kcal Electronic energy + Delta-G solvation = -31088.027987 eV Core-core repulsion = 27014.099310 eV Total energy + Delta-G solvation = -4073.928677 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.95536 -41.11949 -40.14902 -37.52025 -36.88697 -35.80469 -34.75917 -33.57609 -32.72613 -32.04826 -29.35154 -28.76810 -27.80164 -26.84440 -25.01033 -24.35027 -24.02077 -22.73479 -22.58614 -20.51663 -19.87833 -18.65276 -18.37870 -17.88350 -17.79599 -17.25709 -17.04309 -16.76732 -16.49318 -16.37520 -15.93449 -15.60819 -15.39042 -14.87901 -14.74306 -14.58501 -14.52636 -14.31678 -14.13228 -13.95565 -13.82265 -13.70640 -13.33778 -13.17488 -13.04907 -12.79784 -12.71931 -12.67825 -12.49802 -12.36715 -12.27468 -12.19998 -11.98734 -11.66036 -11.65010 -11.10792 -10.79394 -10.63112 -10.48552 -10.40648 -9.92297 -9.72877 -9.48352 -8.17920 -6.27143 0.16572 0.38669 1.39864 1.46506 1.48866 1.51442 1.66857 1.94995 2.28675 2.44757 2.97974 3.14541 3.31287 3.49024 3.59213 3.73469 3.91093 3.96334 3.97098 4.02086 4.05911 4.14005 4.15453 4.24948 4.35238 4.53259 4.53898 4.58351 4.65464 4.69372 4.73572 4.80225 4.86528 4.90968 4.92231 5.03041 5.11221 5.14739 5.20152 5.24397 5.29387 5.34497 5.41701 5.61068 5.67586 5.81525 5.82745 6.02640 6.08264 6.54164 6.84093 7.06267 7.09862 7.25410 7.43406 8.87420 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007835 B = 0.004339 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3572.854386 B = 6452.097215 C = 9438.287484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.121 3.879 4 N -0.614 5.614 5 C 0.127 3.873 6 C -0.110 4.110 7 H 0.117 0.883 8 C 0.531 3.469 9 O -0.572 6.572 10 N -0.587 5.587 11 C 0.253 3.747 12 C -0.527 4.527 13 H 0.058 0.942 14 C 0.034 3.966 15 N -0.915 5.915 16 Si 0.932 3.068 17 H -0.274 1.274 18 H -0.290 1.290 19 H -0.274 1.274 20 C 0.162 3.838 21 C -0.155 4.155 22 C -0.062 4.062 23 C -0.169 4.169 24 C 0.088 3.912 25 N -0.513 5.513 26 C 0.100 3.900 27 C -0.123 4.123 28 C 0.513 3.487 29 O -0.578 6.578 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.037 0.963 35 H 0.111 0.889 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.024 0.976 40 H 0.030 0.970 41 H 0.265 0.735 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.140 0.860 45 H 0.166 0.834 46 H 0.183 0.817 47 H 0.148 0.852 48 H 0.094 0.906 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.712 -3.694 -14.343 17.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.000 4.000 4 N -0.346 5.346 5 C 0.004 3.996 6 C -0.131 4.131 7 H 0.135 0.865 8 C 0.320 3.680 9 O -0.453 6.453 10 N -0.316 5.316 11 C 0.132 3.868 12 C -0.566 4.566 13 H 0.076 0.924 14 C -0.167 4.167 15 N -0.554 5.554 16 Si 0.759 3.241 17 H -0.199 1.199 18 H -0.216 1.216 19 H -0.199 1.199 20 C 0.039 3.961 21 C -0.158 4.158 22 C -0.088 4.088 23 C -0.189 4.189 24 C -0.069 4.069 25 N -0.222 5.222 26 C -0.057 4.057 27 C -0.163 4.163 28 C 0.302 3.698 29 O -0.458 6.458 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.129 0.871 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.128 0.872 39 H 0.042 0.958 40 H 0.048 0.952 41 H 0.074 0.926 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.158 0.842 45 H 0.183 0.817 46 H 0.200 0.800 47 H 0.165 0.835 48 H 0.112 0.888 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.436 -3.323 -14.030 16.705 hybrid contribution -0.040 -0.772 1.620 1.795 sum -8.475 -4.095 -12.410 15.576 Atomic orbital electron populations 1.21656 0.93146 1.02591 1.02663 1.21874 0.97736 0.96426 1.01648 1.21673 0.76490 0.97801 1.04041 1.48468 1.07103 1.72264 1.06799 1.22032 0.87081 1.04011 0.86427 1.22049 0.94309 1.02250 0.94531 0.86546 1.20104 0.83610 0.82056 0.82274 1.90574 1.82432 1.36837 1.35504 1.48147 1.04785 1.41527 1.37120 1.19131 0.96228 0.86855 0.84542 1.21568 1.46952 0.95125 0.92974 0.92363 1.25355 0.95041 0.95078 1.01243 1.69972 1.47619 1.07060 1.30741 0.85939 0.78453 0.78687 0.80998 1.19927 1.21615 1.19907 1.20193 0.91784 0.94463 0.89698 1.21261 0.98019 0.99728 0.96765 1.21785 0.97173 0.97943 0.91931 1.22466 0.98898 0.97052 1.00451 1.23316 0.92274 0.95798 0.95555 1.67713 1.28987 1.25219 1.00296 1.22731 0.94754 0.91428 0.96769 1.22270 0.92875 1.05063 0.96089 1.21284 0.90043 0.74177 0.84343 1.90643 1.79406 1.52783 1.22972 0.92770 0.90740 0.91909 0.91086 0.94397 0.87065 0.91291 0.89455 0.87156 0.95800 0.95187 0.92583 0.89217 0.89317 0.84191 0.81651 0.80031 0.83487 0.88790 0.87524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.91 71.98 0.71 -1.45 16 2 C -0.14 -2.86 6.26 30.60 0.19 -2.67 16 3 C 0.12 2.67 5.93 86.38 0.51 3.18 16 4 N -0.61 -17.35 2.93 -817.99 -2.40 -19.75 16 5 C 0.13 3.21 6.71 86.83 0.58 3.79 16 6 C -0.11 -3.44 2.54 -10.49 -0.03 -3.47 16 7 H 0.12 3.54 7.25 -2.39 -0.02 3.52 16 8 C 0.53 18.15 6.95 87.66 0.61 18.76 16 9 O -0.57 -19.94 14.74 -3.04 -0.04 -19.99 16 10 N -0.59 -21.04 2.44 -830.53 -2.03 -23.06 16 11 C 0.25 10.70 4.71 85.63 0.40 11.10 16 12 C -0.53 -24.70 6.39 25.60 0.16 -24.54 16 13 H 0.06 2.77 7.53 -2.91 -0.02 2.74 16 14 C 0.03 1.69 5.44 84.65 0.46 2.15 16 15 N -0.91 -48.40 13.29 21.45 0.28 -48.12 16 16 Si 0.93 41.67 29.54 68.60 2.03 43.70 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 20 C 0.16 5.13 5.56 85.63 0.48 5.61 16 21 C -0.15 -4.56 5.48 -19.77 -0.11 -4.67 16 22 C -0.06 -1.58 9.86 22.47 0.22 -1.36 16 23 C -0.17 -3.54 10.11 22.36 0.23 -3.31 16 24 C 0.09 2.01 11.18 84.68 0.95 2.95 16 25 N -0.51 -15.34 10.36 -195.84 -2.03 -17.37 16 26 C 0.10 3.10 10.86 84.67 0.92 4.02 16 27 C -0.12 -4.56 4.47 30.59 0.14 -4.42 16 28 C 0.51 19.04 8.02 87.89 0.70 19.75 16 29 O -0.58 -25.84 17.59 -3.02 -0.05 -25.90 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.07 1.71 7.92 -2.39 -0.02 1.69 16 37 H 0.09 2.30 6.96 -2.38 -0.02 2.28 16 38 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 40 H 0.03 1.34 6.11 -2.39 -0.01 1.32 16 41 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 42 H 0.09 2.85 8.02 -2.39 -0.02 2.83 16 43 H 0.09 2.72 7.37 -2.39 -0.02 2.70 16 44 H 0.14 3.52 7.71 -2.91 -0.02 3.50 16 45 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 46 H 0.18 2.84 8.06 -2.91 -0.02 2.82 16 47 H 0.15 4.68 8.06 -2.91 -0.02 4.66 16 48 H 0.09 3.69 7.47 -2.39 -0.02 3.67 16 49 H 0.11 4.62 6.38 -2.38 -0.02 4.60 16 Total: -1.00 -63.09 402.88 3.84 -59.25 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 0.94 Total: 25.82 kcal Atomic # 6 Polarization: 18.29 SS G_CDS: 7.13 Total: 25.42 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -6.17 Total: -108.30 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -0.10 Total: -45.88 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -63.09 3.84 -59.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413255465.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.061 kcal (2) G-P(sol) polarization free energy of solvation -63.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds