Wall clock time and date at job start Wed Apr 1 2020 03:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.47075 * 2 1 4 4 N 1.46496 * 109.46946 * 180.02562 * 3 2 1 5 5 C 1.46766 * 124.34541 * 269.94620 * 4 3 2 6 6 C 1.54473 * 105.47512 * 197.04196 * 5 4 3 7 7 H 1.08994 * 111.00502 * 92.71635 * 6 5 4 8 8 C 1.50704 * 110.96918 * 216.46608 * 6 5 4 9 9 O 1.21277 * 120.00033 * 353.82979 * 8 6 5 10 10 N 1.34781 * 119.99714 * 173.82852 * 8 6 5 11 11 C 1.46494 * 120.00175 * 0.02562 * 10 8 6 12 12 C 1.50708 * 109.46932 * 269.99621 * 11 10 8 13 13 H 1.08002 * 119.99735 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99810 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00456 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99724 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47118 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47558 * 119.99869 * 16 14 12 19 19 H 1.48502 * 109.47041 * 240.00069 * 16 14 12 20 20 C 1.46498 * 119.99588 * 179.97438 * 10 8 6 21 21 C 1.50706 * 109.46996 * 90.00631 * 20 10 8 22 22 C 1.38225 * 119.61903 * 94.72317 * 21 20 10 23 23 C 1.38628 * 119.15868 * 179.75305 * 22 21 20 24 24 C 1.38681 * 118.42043 * 0.51112 * 23 22 21 25 25 C 1.38179 * 119.15955 * 359.73317 * 24 23 22 26 26 N 1.31858 * 119.61572 * 274.99861 * 21 20 10 27 27 C 1.54633 * 101.76536 * 334.58446 * 6 5 4 28 28 C 1.34415 * 124.35713 * 89.97477 * 4 3 2 29 29 O 1.21279 * 124.93580 * 359.60444 * 28 4 3 30 30 H 1.09000 * 109.46879 * 60.00429 * 1 2 3 31 31 H 1.08998 * 109.46457 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47089 * 299.99682 * 1 2 3 33 33 H 1.09002 * 109.47020 * 240.00005 * 2 1 3 34 34 H 1.09002 * 109.46939 * 120.00120 * 2 1 3 35 35 H 1.08991 * 109.46959 * 59.99670 * 3 2 1 36 36 H 1.09006 * 109.46480 * 300.00106 * 3 2 1 37 37 H 1.09001 * 110.24525 * 78.03793 * 5 4 3 38 38 H 1.09004 * 110.24481 * 316.04501 * 5 4 3 39 39 H 1.08998 * 109.47527 * 29.99071 * 11 10 8 40 40 H 1.08997 * 109.47397 * 149.99979 * 11 10 8 41 41 H 0.97001 * 120.00126 * 179.97438 * 15 14 12 42 42 H 1.09000 * 109.47759 * 330.00110 * 20 10 8 43 43 H 1.09001 * 109.47003 * 210.00120 * 20 10 8 44 44 H 1.07994 * 120.42134 * 359.97438 * 22 21 20 45 45 H 1.08000 * 120.79029 * 180.26865 * 23 22 21 46 46 H 1.07998 * 120.41778 * 179.75200 * 24 23 22 47 47 H 1.08004 * 119.61107 * 180.02562 * 25 24 23 48 48 H 1.08990 * 110.48768 * 143.47668 * 27 6 5 49 49 H 1.08997 * 110.48351 * 265.99228 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3336 1.4434 1.2108 6 6 5.7411 1.8794 0.7471 7 1 5.8674 2.9577 0.8426 8 6 6.8123 1.1441 1.5108 9 8 6.5092 0.4191 2.4346 10 7 8.1071 1.2923 1.1672 11 6 8.4732 2.1685 0.0517 12 6 8.4860 1.3733 -1.2284 13 1 8.2459 0.3205 -1.2125 14 6 8.8054 1.9897 -2.4196 15 7 9.0983 3.2717 -2.4390 16 14 8.8205 1.0042 -4.0064 17 1 8.4573 -0.4063 -3.7166 18 1 7.8387 1.5831 -4.9582 19 1 10.1784 1.0520 -4.6059 20 6 9.1484 0.5780 1.9099 21 6 9.3930 -0.7633 1.2678 22 6 10.4099 -0.9021 0.3419 23 6 10.6299 -2.1414 -0.2391 24 6 9.8082 -3.1970 0.1267 25 6 8.8083 -2.9813 1.0557 26 7 8.6311 -1.7895 1.5917 27 6 5.7296 1.4530 -0.7392 28 6 4.2631 1.4422 -1.1106 29 8 3.8339 1.4350 -2.2448 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6767 1.9563 -0.8901 37 1 4.3715 0.4433 1.6426 38 1 3.9388 2.1539 1.9372 39 1 7.7460 2.9763 -0.0297 40 1 9.4636 2.5877 0.2289 41 1 9.3233 3.7052 -3.2770 42 1 8.8253 0.4338 2.9409 43 1 10.0693 1.1609 1.8959 44 1 11.0275 -0.0567 0.0770 45 1 11.4198 -2.2806 -0.9623 46 1 9.9483 -4.1753 -0.3087 47 1 8.1644 -3.7983 1.3461 48 1 6.2719 2.1764 -1.3478 49 1 6.1616 0.4589 -0.8542 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413359190.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:46 Heat of formation + Delta-G solvation = -34.195675 kcal Electronic energy + Delta-G solvation = -31779.620411 eV Core-core repulsion = 27706.602274 eV Total energy + Delta-G solvation = -4073.018137 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.47959 -39.75844 -38.59003 -36.01509 -35.23360 -34.62251 -32.89050 -32.02776 -31.62091 -30.76083 -27.76304 -27.30972 -26.49620 -25.69045 -23.22663 -23.01179 -22.57158 -21.68206 -21.32371 -19.10330 -18.33372 -17.01566 -16.74123 -16.42643 -16.31872 -15.81939 -15.60932 -15.36476 -15.12825 -14.81581 -14.46331 -14.25204 -14.05671 -13.61377 -13.34533 -13.23253 -13.14405 -12.83447 -12.68518 -12.55872 -12.35252 -12.19106 -12.12321 -11.76448 -11.71036 -11.39548 -11.33050 -11.30898 -11.02200 -10.90224 -10.77773 -10.69516 -10.65667 -10.18958 -9.78906 -9.49457 -9.42754 -9.04373 -9.00058 -8.65328 -8.50669 -8.41118 -7.84297 -6.24469 -4.28847 1.48233 1.71976 3.04928 3.20792 3.24357 3.25133 3.32792 3.37000 3.77772 4.29323 4.37029 4.71411 4.73727 4.83265 4.97435 5.04332 5.12065 5.13092 5.16907 5.23491 5.27501 5.40838 5.43127 5.46256 5.54190 5.61237 5.68839 5.70914 5.81909 5.84377 5.92464 5.93882 6.09140 6.10783 6.13903 6.18026 6.24761 6.47415 6.51729 6.58355 6.62507 6.78282 6.87109 7.07129 7.10594 7.41453 7.45004 7.70467 7.96748 8.19627 8.47203 8.59575 8.72062 8.91296 9.37375 10.81728 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008935 B = 0.004597 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.935648 B = 6088.932459 C = 7364.653476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.143 4.143 3 C 0.128 3.872 4 N -0.626 5.626 5 C 0.121 3.879 6 C -0.114 4.114 7 H 0.110 0.890 8 C 0.529 3.471 9 O -0.548 6.548 10 N -0.589 5.589 11 C 0.234 3.766 12 C -0.529 4.529 13 H 0.061 0.939 14 C 0.071 3.929 15 N -0.887 5.887 16 Si 0.883 3.117 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.283 1.283 20 C 0.172 3.828 21 C 0.123 3.877 22 C -0.131 4.131 23 C -0.084 4.084 24 C -0.180 4.180 25 C 0.087 3.913 26 N -0.461 5.461 27 C -0.128 4.128 28 C 0.516 3.484 29 O -0.538 6.538 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.041 0.959 40 H 0.038 0.962 41 H 0.265 0.735 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.137 0.863 45 H 0.128 0.872 46 H 0.125 0.875 47 H 0.146 0.854 48 H 0.135 0.865 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.194 -4.777 7.553 9.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.182 4.182 3 C 0.006 3.994 4 N -0.361 5.361 5 C -0.002 4.002 6 C -0.136 4.136 7 H 0.128 0.872 8 C 0.316 3.684 9 O -0.427 6.427 10 N -0.320 5.320 11 C 0.114 3.886 12 C -0.567 4.567 13 H 0.079 0.921 14 C -0.132 4.132 15 N -0.525 5.525 16 Si 0.711 3.289 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.210 1.210 20 C 0.048 3.952 21 C -0.016 4.016 22 C -0.152 4.152 23 C -0.110 4.110 24 C -0.201 4.201 25 C -0.071 4.071 26 N -0.170 5.170 27 C -0.168 4.168 28 C 0.305 3.695 29 O -0.415 6.415 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.155 0.845 45 H 0.146 0.854 46 H 0.143 0.857 47 H 0.163 0.837 48 H 0.153 0.847 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.256 -4.843 7.924 10.671 hybrid contribution 0.836 -0.688 -1.919 2.204 sum -4.421 -5.531 6.005 9.284 Atomic orbital electron populations 1.21686 0.95288 1.01793 1.01761 1.21933 0.95906 0.97556 1.02798 1.21350 0.78653 0.96734 1.02687 1.48433 1.05766 1.74237 1.07677 1.21934 0.88752 1.03044 0.86500 1.22064 0.93253 1.01852 0.96383 0.87182 1.19934 0.83485 0.81512 0.83460 1.90651 1.81959 1.39485 1.30615 1.48126 1.04564 1.45352 1.33934 1.19586 0.97291 0.89000 0.82725 1.21423 1.47723 0.96230 0.91340 0.92066 1.24816 0.94834 0.94765 0.98814 1.69903 1.45929 1.09421 1.27281 0.86647 0.77735 0.80692 0.83865 1.19691 1.20524 1.20953 1.20105 0.92064 0.87346 0.95719 1.21627 0.90804 0.94866 0.94334 1.21995 0.99092 0.97838 0.96255 1.21508 0.98595 0.92931 0.98007 1.22040 0.97948 0.99920 1.00159 1.22626 0.95893 0.94685 0.93868 1.67560 1.25042 0.99232 1.25175 1.22646 0.92418 1.06947 0.94766 1.21430 0.89895 0.74067 0.84104 1.90665 1.78901 1.50586 1.21307 0.92597 0.92597 0.92677 0.91605 0.91650 0.90705 0.90323 0.89661 0.90588 0.94141 0.94442 0.92502 0.89285 0.89371 0.84520 0.85449 0.85683 0.83656 0.84683 0.87347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.03 16 2 C -0.14 -1.74 6.26 -26.72 -0.17 -1.90 16 3 C 0.13 1.65 5.93 -4.04 -0.02 1.63 16 4 N -0.63 -9.90 2.93 -172.42 -0.51 -10.41 16 5 C 0.12 1.80 6.66 -3.12 -0.02 1.78 16 6 C -0.11 -1.92 2.57 -90.14 -0.23 -2.15 16 7 H 0.11 1.71 7.56 -51.93 -0.39 1.32 16 8 C 0.53 9.96 6.99 -10.98 -0.08 9.88 16 9 O -0.55 -11.25 15.15 5.56 0.08 -11.17 16 10 N -0.59 -11.06 2.44 -176.43 -0.43 -11.49 16 11 C 0.23 4.83 4.74 -5.19 -0.02 4.81 16 12 C -0.53 -12.14 5.92 -34.44 -0.20 -12.34 16 13 H 0.06 1.51 7.22 -52.49 -0.38 1.13 16 14 C 0.07 1.75 5.33 -17.82 -0.09 1.65 16 15 N -0.89 -22.73 13.29 55.43 0.74 -21.99 16 16 Si 0.88 20.31 29.54 -169.99 -5.02 15.29 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 20 C 0.17 2.94 5.76 -5.19 -0.03 2.91 16 21 C 0.12 2.18 6.36 -82.58 -0.53 1.66 16 22 C -0.13 -2.17 9.55 -39.44 -0.38 -2.55 16 23 C -0.08 -1.25 10.18 -39.27 -0.40 -1.65 16 24 C -0.18 -2.56 10.11 -39.44 -0.40 -2.95 16 25 C 0.09 1.36 11.18 -17.55 -0.20 1.17 16 26 N -0.46 -8.52 10.27 -9.47 -0.10 -8.61 16 27 C -0.13 -2.48 4.22 -26.74 -0.11 -2.60 16 28 C 0.52 10.04 8.02 -10.86 -0.09 9.95 16 29 O -0.54 -12.25 17.59 5.56 0.10 -12.15 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.07 7.93 -51.93 -0.41 0.66 16 37 H 0.09 1.38 7.06 -51.93 -0.37 1.01 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.04 0.87 5.96 -51.93 -0.31 0.56 16 40 H 0.04 0.81 7.89 -51.93 -0.41 0.40 16 41 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 42 H 0.09 1.53 7.42 -51.93 -0.39 1.15 16 43 H 0.09 1.31 7.79 -51.93 -0.40 0.90 16 44 H 0.14 2.17 8.06 -52.49 -0.42 1.75 16 45 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 46 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 47 H 0.15 1.90 8.06 -52.48 -0.42 1.48 16 48 H 0.14 2.93 6.05 -51.93 -0.31 2.62 16 49 H 0.11 2.32 6.77 -51.93 -0.35 1.97 16 LS Contribution 401.42 15.07 6.05 6.05 Total: -1.00 -30.00 401.42 -9.20 -39.20 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -7.51 Total: 7.03 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: -2.60 Total: 8.26 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.30 Total: -52.50 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.18 Total: -23.32 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.00 -9.20 -39.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413359190.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.006 kcal (2) G-P(sol) polarization free energy of solvation -30.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds