Wall clock time and date at job start Wed Apr 1 2020 03:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.47075 * 2 1 4 4 N 1.46496 * 109.46946 * 180.02562 * 3 2 1 5 5 C 1.46766 * 124.34541 * 269.94620 * 4 3 2 6 6 C 1.54473 * 105.47512 * 197.04196 * 5 4 3 7 7 H 1.08994 * 111.00502 * 92.71635 * 6 5 4 8 8 C 1.50704 * 110.96918 * 216.46608 * 6 5 4 9 9 O 1.21277 * 120.00033 * 353.82979 * 8 6 5 10 10 N 1.34781 * 119.99714 * 173.82852 * 8 6 5 11 11 C 1.46494 * 120.00175 * 0.02562 * 10 8 6 12 12 C 1.50708 * 109.46932 * 269.99621 * 11 10 8 13 13 H 1.08002 * 119.99735 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99810 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00456 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99724 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47118 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47558 * 119.99869 * 16 14 12 19 19 H 1.48502 * 109.47041 * 240.00069 * 16 14 12 20 20 C 1.46498 * 119.99588 * 179.97438 * 10 8 6 21 21 C 1.50706 * 109.46996 * 90.00631 * 20 10 8 22 22 C 1.38225 * 119.61903 * 94.72317 * 21 20 10 23 23 C 1.38628 * 119.15868 * 179.75305 * 22 21 20 24 24 C 1.38681 * 118.42043 * 0.51112 * 23 22 21 25 25 C 1.38179 * 119.15955 * 359.73317 * 24 23 22 26 26 N 1.31858 * 119.61572 * 274.99861 * 21 20 10 27 27 C 1.54633 * 101.76536 * 334.58446 * 6 5 4 28 28 C 1.34415 * 124.35713 * 89.97477 * 4 3 2 29 29 O 1.21279 * 124.93580 * 359.60444 * 28 4 3 30 30 H 1.09000 * 109.46879 * 60.00429 * 1 2 3 31 31 H 1.08998 * 109.46457 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47089 * 299.99682 * 1 2 3 33 33 H 1.09002 * 109.47020 * 240.00005 * 2 1 3 34 34 H 1.09002 * 109.46939 * 120.00120 * 2 1 3 35 35 H 1.08991 * 109.46959 * 59.99670 * 3 2 1 36 36 H 1.09006 * 109.46480 * 300.00106 * 3 2 1 37 37 H 1.09001 * 110.24525 * 78.03793 * 5 4 3 38 38 H 1.09004 * 110.24481 * 316.04501 * 5 4 3 39 39 H 1.08998 * 109.47527 * 29.99071 * 11 10 8 40 40 H 1.08997 * 109.47397 * 149.99979 * 11 10 8 41 41 H 0.97001 * 120.00126 * 179.97438 * 15 14 12 42 42 H 1.09000 * 109.47759 * 330.00110 * 20 10 8 43 43 H 1.09001 * 109.47003 * 210.00120 * 20 10 8 44 44 H 1.07994 * 120.42134 * 359.97438 * 22 21 20 45 45 H 1.08000 * 120.79029 * 180.26865 * 23 22 21 46 46 H 1.07998 * 120.41778 * 179.75200 * 24 23 22 47 47 H 1.08004 * 119.61107 * 180.02562 * 25 24 23 48 48 H 1.08990 * 110.48768 * 143.47668 * 27 6 5 49 49 H 1.08997 * 110.48351 * 265.99228 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3336 1.4434 1.2108 6 6 5.7411 1.8794 0.7471 7 1 5.8674 2.9577 0.8426 8 6 6.8123 1.1441 1.5108 9 8 6.5092 0.4191 2.4346 10 7 8.1071 1.2923 1.1672 11 6 8.4732 2.1685 0.0517 12 6 8.4860 1.3733 -1.2284 13 1 8.2459 0.3205 -1.2125 14 6 8.8054 1.9897 -2.4196 15 7 9.0983 3.2717 -2.4390 16 14 8.8205 1.0042 -4.0064 17 1 8.4573 -0.4063 -3.7166 18 1 7.8387 1.5831 -4.9582 19 1 10.1784 1.0520 -4.6059 20 6 9.1484 0.5780 1.9099 21 6 9.3930 -0.7633 1.2678 22 6 10.4099 -0.9021 0.3419 23 6 10.6299 -2.1414 -0.2391 24 6 9.8082 -3.1970 0.1267 25 6 8.8083 -2.9813 1.0557 26 7 8.6311 -1.7895 1.5917 27 6 5.7296 1.4530 -0.7392 28 6 4.2631 1.4422 -1.1106 29 8 3.8339 1.4350 -2.2448 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6767 1.9563 -0.8901 37 1 4.3715 0.4433 1.6426 38 1 3.9388 2.1539 1.9372 39 1 7.7460 2.9763 -0.0297 40 1 9.4636 2.5877 0.2289 41 1 9.3233 3.7052 -3.2770 42 1 8.8253 0.4338 2.9409 43 1 10.0693 1.1609 1.8959 44 1 11.0275 -0.0567 0.0770 45 1 11.4198 -2.2806 -0.9623 46 1 9.9483 -4.1753 -0.3087 47 1 8.1644 -3.7983 1.3461 48 1 6.2719 2.1764 -1.3478 49 1 6.1616 0.4589 -0.8542 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413359190.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:45 Heat of formation + Delta-G solvation = -50.714894 kcal Electronic energy + Delta-G solvation = -31780.336739 eV Core-core repulsion = 27706.602274 eV Total energy + Delta-G solvation = -4073.734464 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.93749 -41.04659 -40.06547 -37.49783 -36.82922 -35.77433 -34.61817 -33.32359 -32.92931 -32.01630 -29.42682 -28.74784 -27.84012 -26.88657 -24.90298 -24.27923 -23.94910 -22.73811 -22.62758 -20.51129 -19.84459 -18.67182 -18.29125 -17.78710 -17.72336 -17.09941 -17.02042 -16.70170 -16.48453 -16.38952 -15.83314 -15.71950 -15.44695 -14.82722 -14.65060 -14.63002 -14.51214 -14.31366 -14.03186 -13.91202 -13.79386 -13.67109 -13.30950 -13.07602 -13.05044 -12.78933 -12.73119 -12.57238 -12.52179 -12.43907 -12.25657 -12.18986 -11.95621 -11.67015 -11.61020 -11.04655 -10.70005 -10.60782 -10.48955 -10.29342 -9.82511 -9.73972 -9.41376 -8.16283 -6.20908 0.25473 0.49964 1.33254 1.43365 1.46447 1.48690 1.75104 1.94887 2.32282 2.43876 3.06824 3.17110 3.33458 3.47627 3.54161 3.77792 3.94541 3.97667 4.01624 4.05409 4.07613 4.21871 4.31914 4.33848 4.36057 4.53515 4.57629 4.58561 4.64280 4.66811 4.70365 4.86937 4.88868 4.93450 4.96453 5.04473 5.12274 5.13657 5.19692 5.31052 5.32418 5.33316 5.37952 5.61122 5.72681 5.86527 5.90714 6.02314 6.12551 6.59482 6.87833 7.09729 7.22089 7.33916 7.48304 8.89231 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008935 B = 0.004597 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.935648 B = 6088.932459 C = 7364.653476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.139 4.139 3 C 0.121 3.879 4 N -0.614 5.614 5 C 0.128 3.872 6 C -0.109 4.109 7 H 0.128 0.872 8 C 0.528 3.472 9 O -0.564 6.564 10 N -0.589 5.589 11 C 0.248 3.752 12 C -0.505 4.505 13 H 0.044 0.956 14 C 0.040 3.960 15 N -0.911 5.911 16 Si 0.918 3.082 17 H -0.279 1.279 18 H -0.293 1.293 19 H -0.275 1.275 20 C 0.169 3.831 21 C 0.103 3.897 22 C -0.145 4.145 23 C -0.090 4.090 24 C -0.173 4.173 25 C 0.072 3.928 26 N -0.494 5.494 27 C -0.118 4.118 28 C 0.511 3.489 29 O -0.579 6.579 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.068 0.932 35 H 0.113 0.887 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.115 0.885 39 H 0.037 0.963 40 H 0.033 0.967 41 H 0.264 0.736 42 H 0.086 0.914 43 H 0.107 0.893 44 H 0.137 0.863 45 H 0.153 0.847 46 H 0.161 0.839 47 H 0.168 0.832 48 H 0.110 0.890 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.913 -5.373 8.737 11.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.178 4.178 3 C 0.000 4.000 4 N -0.346 5.346 5 C 0.005 3.995 6 C -0.130 4.130 7 H 0.146 0.854 8 C 0.315 3.685 9 O -0.444 6.444 10 N -0.319 5.319 11 C 0.127 3.873 12 C -0.544 4.544 13 H 0.062 0.938 14 C -0.160 4.160 15 N -0.551 5.551 16 Si 0.747 3.253 17 H -0.204 1.204 18 H -0.220 1.220 19 H -0.200 1.200 20 C 0.046 3.954 21 C -0.035 4.035 22 C -0.166 4.166 23 C -0.116 4.116 24 C -0.192 4.192 25 C -0.085 4.085 26 N -0.204 5.204 27 C -0.159 4.159 28 C 0.300 3.700 29 O -0.460 6.460 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.131 0.869 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.133 0.867 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.073 0.927 42 H 0.104 0.896 43 H 0.125 0.875 44 H 0.155 0.845 45 H 0.171 0.829 46 H 0.178 0.822 47 H 0.185 0.815 48 H 0.128 0.872 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.975 -5.452 9.152 12.214 hybrid contribution 1.044 -0.616 -2.238 2.546 sum -4.931 -6.068 6.914 10.437 Atomic orbital electron populations 1.21651 0.92936 1.02593 1.02756 1.21887 0.97920 0.96594 1.01416 1.21675 0.76488 0.97648 1.04155 1.48485 1.07125 1.72229 1.06787 1.22004 0.87393 1.03653 0.86425 1.22095 0.94096 1.02696 0.94159 0.85371 1.20184 0.83707 0.81269 0.83307 1.90640 1.82130 1.40126 1.31455 1.48086 1.05192 1.45215 1.33425 1.19283 0.96812 0.88746 0.82413 1.21384 1.45640 0.95287 0.92103 0.93781 1.25157 0.95468 0.95167 1.00255 1.69939 1.47628 1.10046 1.27449 0.86110 0.77576 0.79401 0.82254 1.20446 1.21997 1.20000 1.20244 0.92309 0.87665 0.95206 1.21660 0.91634 0.94939 0.95302 1.22108 0.99105 0.98855 0.96519 1.21904 0.99226 0.92432 0.98021 1.22416 0.96566 1.01278 0.98964 1.23113 0.96761 0.94475 0.94126 1.67523 1.25993 1.00351 1.26521 1.22333 0.92487 1.04737 0.96307 1.21363 0.90178 0.74127 0.84340 1.90634 1.79464 1.52854 1.23007 0.92635 0.91967 0.90623 0.94641 0.91376 0.86865 0.91149 0.90472 0.86665 0.94494 0.94905 0.92655 0.89613 0.87516 0.84481 0.82886 0.82152 0.81501 0.87219 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.91 71.98 0.71 -1.64 16 2 C -0.14 -3.18 6.26 30.60 0.19 -2.99 16 3 C 0.12 2.87 5.93 86.38 0.51 3.39 16 4 N -0.61 -18.62 2.93 -818.00 -2.40 -21.02 16 5 C 0.13 3.54 6.66 86.83 0.58 4.12 16 6 C -0.11 -3.59 2.57 -10.48 -0.03 -3.61 16 7 H 0.13 3.78 7.56 -2.39 -0.02 3.76 16 8 C 0.53 19.61 6.99 87.66 0.61 20.23 16 9 O -0.56 -22.75 15.15 -3.02 -0.05 -22.79 16 10 N -0.59 -22.07 2.44 -830.50 -2.03 -24.10 16 11 C 0.25 10.30 4.74 85.64 0.41 10.70 16 12 C -0.51 -23.48 5.92 25.60 0.15 -23.33 16 13 H 0.04 2.21 7.22 -2.91 -0.02 2.19 16 14 C 0.04 1.99 5.33 84.65 0.45 2.44 16 15 N -0.91 -46.99 13.29 21.45 0.28 -46.71 16 16 Si 0.92 42.08 29.54 68.60 2.03 44.11 16 17 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 18 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 20 C 0.17 5.78 5.76 85.64 0.49 6.27 16 21 C 0.10 3.66 6.36 42.55 0.27 3.93 16 22 C -0.15 -4.73 9.55 22.36 0.21 -4.52 16 23 C -0.09 -2.52 10.18 22.47 0.23 -2.29 16 24 C -0.17 -4.50 10.11 22.36 0.23 -4.28 16 25 C 0.07 2.19 11.18 84.67 0.95 3.14 16 26 N -0.49 -18.13 10.27 -183.88 -1.89 -20.02 16 27 C -0.12 -4.69 4.22 30.59 0.13 -4.56 16 28 C 0.51 20.12 8.02 87.90 0.71 20.82 16 29 O -0.58 -27.15 17.59 -3.03 -0.05 -27.20 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.07 1.83 7.93 -2.38 -0.02 1.81 16 37 H 0.08 2.35 7.06 -2.39 -0.02 2.33 16 38 H 0.12 2.39 8.14 -2.38 -0.02 2.37 16 39 H 0.04 1.59 5.96 -2.39 -0.01 1.57 16 40 H 0.03 1.42 7.89 -2.39 -0.02 1.40 16 41 H 0.26 13.30 8.31 -92.71 -0.77 12.53 16 42 H 0.09 2.95 7.42 -2.39 -0.02 2.94 16 43 H 0.11 3.13 7.79 -2.39 -0.02 3.11 16 44 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 45 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 46 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 47 H 0.17 4.09 8.06 -2.91 -0.02 4.07 16 48 H 0.11 4.92 6.05 -2.39 -0.01 4.90 16 49 H 0.08 3.72 6.77 -2.39 -0.02 3.70 16 Total: -1.00 -66.13 401.42 3.65 -62.48 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.95 Total: 27.43 kcal Atomic # 6 Polarization: 21.00 SS G_CDS: 6.80 Total: 27.81 kcal Atomic # 7 Polarization: -105.81 SS G_CDS: -6.03 Total: -111.84 kcal Atomic # 8 Polarization: -49.89 SS G_CDS: -0.10 Total: -49.99 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -66.13 3.65 -62.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413359190.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.767 kcal (2) G-P(sol) polarization free energy of solvation -66.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds