Wall clock time and date at job start Wed Apr 1 2020 03:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 N 1.46500 * 109.46998 * 179.97438 * 3 2 1 5 5 C 1.46762 * 124.35153 * 89.99716 * 4 3 2 6 6 C 1.54472 * 105.47547 * 162.98572 * 5 4 3 7 7 H 1.08997 * 110.97349 * 267.26422 * 6 5 4 8 8 C 1.50697 * 110.97090 * 143.53555 * 6 5 4 9 9 O 1.21284 * 120.00291 * 0.02562 * 8 6 5 10 10 N 1.34780 * 120.00159 * 179.97438 * 8 6 5 11 11 C 1.46496 * 120.00060 * 0.02562 * 10 8 6 12 12 C 1.50700 * 109.47363 * 89.99457 * 11 10 8 13 13 H 1.08006 * 120.00001 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00246 * 179.97438 * 12 11 10 15 15 N 1.31521 * 120.00213 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00116 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47356 * 90.00290 * 16 14 12 18 18 H 1.48497 * 109.47189 * 210.00216 * 16 14 12 19 19 H 1.48498 * 109.47192 * 330.00188 * 16 14 12 20 20 C 1.46497 * 120.00073 * 179.97438 * 10 8 6 21 21 C 1.50701 * 109.47252 * 90.00165 * 20 10 8 22 22 C 1.38226 * 119.61762 * 94.72617 * 21 20 10 23 23 C 1.38631 * 119.16385 * 179.71410 * 22 21 20 24 24 C 1.38673 * 118.41735 * 0.55091 * 23 22 21 25 25 C 1.38177 * 119.16111 * 359.73465 * 24 23 22 26 26 N 1.31854 * 119.62203 * 275.00167 * 21 20 10 27 27 C 1.54629 * 101.76491 * 25.41913 * 6 5 4 28 28 C 1.34427 * 124.34965 * 269.70266 * 4 3 2 29 29 O 1.21278 * 124.93859 * 0.38965 * 28 4 3 30 30 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 31 31 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 32 32 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 34 34 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 35 35 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 36 36 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 37 37 H 1.09005 * 110.24554 * 281.98783 * 5 4 3 38 38 H 1.08997 * 110.24452 * 43.98250 * 5 4 3 39 39 H 1.08996 * 109.47266 * 209.99632 * 11 10 8 40 40 H 1.08996 * 109.46916 * 329.99829 * 11 10 8 41 41 H 0.96995 * 120.00499 * 179.97438 * 15 14 12 42 42 H 1.08998 * 109.47439 * 210.00233 * 20 10 8 43 43 H 1.08999 * 109.47396 * 330.00804 * 20 10 8 44 44 H 1.08005 * 120.41909 * 359.97438 * 22 21 20 45 45 H 1.08002 * 120.79128 * 180.25973 * 23 22 21 46 46 H 1.07993 * 120.42098 * 179.74981 * 24 23 22 47 47 H 1.08009 * 119.61604 * 179.97438 * 25 24 23 48 48 H 1.08993 * 110.48787 * 93.88069 * 27 6 5 49 49 H 1.09004 * 110.48551 * 216.52724 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.3335 1.4425 -1.2107 6 6 5.7412 1.8783 -0.7472 7 1 5.8673 2.9566 -0.8439 8 6 6.8121 1.1423 -1.5102 9 8 6.5042 0.3324 -2.3589 10 7 8.1122 1.3846 -1.2502 11 6 8.4842 2.3632 -0.2255 12 6 8.6067 1.6722 1.1082 13 1 8.4259 0.6101 1.1847 14 6 8.9505 2.3955 2.2304 15 7 9.1712 3.6887 2.1372 16 14 9.1029 1.5388 3.8834 17 1 10.4974 1.0625 4.0674 18 1 8.7583 2.4921 4.9686 19 1 8.1743 0.3809 3.9283 20 6 9.1533 0.6687 -1.9916 21 6 9.5157 1.4490 -3.2289 22 6 10.5887 2.3198 -3.1975 23 6 10.9175 3.0284 -4.3428 24 6 10.1441 2.8423 -5.4786 25 6 9.0825 1.9591 -5.4331 26 7 8.8023 1.2972 -4.3273 27 6 5.7294 1.4529 0.7394 28 6 4.2629 1.4487 1.1108 29 8 3.8335 1.4479 2.2450 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 1.6764 1.9564 0.8900 37 1 4.3712 0.4420 -1.6417 38 1 3.9391 2.1525 -1.9376 39 1 9.4391 2.8187 -0.4877 40 1 7.7175 3.1356 -0.1654 41 1 9.4127 4.1977 2.9268 42 1 10.0357 0.5560 -1.3617 43 1 8.7835 -0.3157 -2.2784 44 1 11.1664 2.4435 -2.2933 45 1 11.7531 3.7125 -4.3488 46 1 10.3688 3.3808 -6.3874 47 1 8.4750 1.8089 -6.3135 48 1 6.1590 0.4579 0.8549 49 1 6.2719 2.1767 1.3476 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413359191.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:50 Heat of formation + Delta-G solvation = -36.641303 kcal Electronic energy + Delta-G solvation = -31087.018983 eV Core-core repulsion = 27013.894795 eV Total energy + Delta-G solvation = -4073.124188 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.49667 -39.94374 -38.62888 -36.04136 -35.22498 -34.62774 -32.94252 -32.23398 -31.69636 -30.85148 -27.73229 -27.36175 -26.55660 -25.73909 -23.42202 -23.04903 -22.69184 -21.71962 -21.34373 -19.12882 -18.34689 -17.11256 -16.75155 -16.44917 -16.32989 -15.96440 -15.66061 -15.43718 -15.31093 -14.83809 -14.50769 -14.35947 -14.03664 -13.64178 -13.57820 -13.22884 -13.18375 -13.06499 -12.72920 -12.58631 -12.37915 -12.20421 -12.13344 -11.73260 -11.72730 -11.58695 -11.35868 -11.27050 -11.00785 -10.92645 -10.75578 -10.72492 -10.68728 -10.19962 -9.85040 -9.69908 -9.49740 -9.18433 -9.10639 -8.78502 -8.58669 -8.42389 -7.85872 -6.24517 -4.31276 1.24699 1.47220 3.01406 3.20255 3.23310 3.28181 3.32920 3.38028 3.68768 4.18771 4.31386 4.55215 4.71901 4.82369 4.93472 4.96475 4.97264 5.04987 5.11733 5.20521 5.22554 5.22905 5.32986 5.40444 5.44538 5.59194 5.66023 5.69728 5.73540 5.80863 5.83948 5.92959 5.96532 6.07584 6.08965 6.17895 6.23442 6.31044 6.34751 6.42256 6.62306 6.73176 6.84009 6.87327 7.08951 7.40547 7.42112 7.69809 7.96208 8.18507 8.28574 8.56453 8.70983 8.91007 9.36211 10.81621 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007842 B = 0.004363 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3569.482290 B = 6416.501896 C = 9412.375424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.143 4.143 3 C 0.128 3.872 4 N -0.625 5.625 5 C 0.119 3.881 6 C -0.113 4.113 7 H 0.109 0.891 8 C 0.529 3.471 9 O -0.549 6.549 10 N -0.588 5.588 11 C 0.237 3.763 12 C -0.538 4.538 13 H 0.064 0.936 14 C 0.070 3.930 15 N -0.888 5.888 16 Si 0.890 3.110 17 H -0.280 1.280 18 H -0.284 1.284 19 H -0.269 1.269 20 C 0.168 3.832 21 C 0.119 3.881 22 C -0.155 4.155 23 C -0.081 4.081 24 C -0.182 4.182 25 C 0.092 3.908 26 N -0.459 5.459 27 C -0.129 4.129 28 C 0.517 3.483 29 O -0.537 6.537 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.036 0.964 40 H 0.038 0.962 41 H 0.266 0.734 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.138 0.862 45 H 0.131 0.869 46 H 0.128 0.872 47 H 0.150 0.850 48 H 0.107 0.893 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.307 -0.922 -11.433 12.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.182 4.182 3 C 0.005 3.995 4 N -0.360 5.360 5 C -0.004 4.004 6 C -0.134 4.134 7 H 0.127 0.873 8 C 0.316 3.684 9 O -0.428 6.428 10 N -0.318 5.318 11 C 0.117 3.883 12 C -0.577 4.577 13 H 0.082 0.918 14 C -0.134 4.134 15 N -0.526 5.526 16 Si 0.717 3.283 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.194 1.194 20 C 0.044 3.956 21 C -0.020 4.020 22 C -0.176 4.176 23 C -0.107 4.107 24 C -0.202 4.202 25 C -0.066 4.066 26 N -0.168 5.168 27 C -0.169 4.169 28 C 0.306 3.694 29 O -0.414 6.414 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.114 0.886 43 H 0.109 0.891 44 H 0.156 0.844 45 H 0.149 0.851 46 H 0.146 0.854 47 H 0.167 0.833 48 H 0.125 0.875 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.419 -1.747 -11.128 12.500 hybrid contribution 1.038 0.530 0.853 1.445 sum -4.381 -1.217 -10.275 11.236 Atomic orbital electron populations 1.21686 0.95290 1.01804 1.01774 1.21928 0.95907 0.97506 1.02814 1.21360 0.78588 0.96780 1.02725 1.48416 1.05797 1.74135 1.07659 1.21961 0.88746 1.03170 0.86514 1.22044 0.93202 1.01934 0.96244 0.87338 1.19920 0.83565 0.82514 0.82392 1.90648 1.82121 1.35906 1.34081 1.48096 1.03958 1.42190 1.37541 1.19509 0.97136 0.86844 0.84819 1.21449 1.48511 0.95554 0.92147 0.91759 1.24880 0.94680 0.94737 0.99107 1.69906 1.46132 1.06194 1.30331 0.86599 0.78510 0.79825 0.83350 1.20595 1.21007 1.19381 1.20135 0.92613 0.94964 0.87899 1.21893 0.90890 0.94907 0.94291 1.22129 0.98896 0.97177 0.99354 1.21553 0.98725 0.97701 0.92723 1.22092 0.97789 1.00897 0.99390 1.22757 0.95014 0.92646 0.96186 1.67643 1.27545 1.22646 0.98929 1.22517 0.92779 1.06640 0.94950 1.21342 0.89782 0.74127 0.84113 1.90668 1.78871 1.50613 1.21271 0.92596 0.92680 0.92579 0.91626 0.91562 0.90719 0.90283 0.89417 0.90700 0.94615 0.94413 0.92408 0.88582 0.89080 0.84437 0.85143 0.85359 0.83297 0.87517 0.84714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 37.16 0.37 -1.00 16 2 C -0.14 -1.68 6.26 -26.73 -0.17 -1.85 16 3 C 0.13 1.62 5.93 -4.04 -0.02 1.60 16 4 N -0.63 -9.73 2.93 -172.42 -0.51 -10.23 16 5 C 0.12 1.78 6.71 -3.13 -0.02 1.76 16 6 C -0.11 -1.92 2.54 -90.14 -0.23 -2.15 16 7 H 0.11 1.80 7.25 -51.93 -0.38 1.43 16 8 C 0.53 10.08 6.95 -10.99 -0.08 10.00 16 9 O -0.55 -11.33 15.08 5.55 0.08 -11.24 16 10 N -0.59 -11.23 2.44 -176.44 -0.43 -11.66 16 11 C 0.24 5.02 4.71 -5.20 -0.02 4.99 16 12 C -0.54 -12.51 6.39 -34.44 -0.22 -12.73 16 13 H 0.06 1.52 7.53 -52.48 -0.39 1.13 16 14 C 0.07 1.72 5.44 -17.82 -0.10 1.62 16 15 N -0.89 -22.98 13.29 55.43 0.74 -22.24 16 16 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 C 0.17 2.92 5.71 -5.19 -0.03 2.89 16 21 C 0.12 1.96 6.36 -82.59 -0.53 1.44 16 22 C -0.16 -2.23 9.72 -39.44 -0.38 -2.61 16 23 C -0.08 -0.98 10.18 -39.28 -0.40 -1.38 16 24 C -0.18 -2.09 10.11 -39.44 -0.40 -2.49 16 25 C 0.09 1.23 11.18 -17.55 -0.20 1.04 16 26 N -0.46 -7.73 10.27 -9.47 -0.10 -7.82 16 27 C -0.13 -2.44 4.47 -26.74 -0.12 -2.55 16 28 C 0.52 9.81 8.02 -10.86 -0.09 9.72 16 29 O -0.54 -11.92 17.59 5.56 0.10 -11.82 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.06 7.92 -51.93 -0.41 0.65 16 37 H 0.09 1.39 6.96 -51.93 -0.36 1.03 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 40 H 0.04 0.84 6.11 -51.93 -0.32 0.52 16 41 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 42 H 0.10 1.55 7.97 -51.93 -0.41 1.14 16 43 H 0.09 1.64 7.42 -51.93 -0.39 1.26 16 44 H 0.14 1.87 8.06 -52.48 -0.42 1.45 16 45 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 46 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 47 H 0.15 1.60 8.06 -52.48 -0.42 1.18 16 48 H 0.11 2.10 7.47 -51.93 -0.39 1.72 16 49 H 0.13 2.87 6.38 -51.93 -0.33 2.54 16 LS Contribution 403.70 15.07 6.08 6.08 Total: -1.00 -29.97 403.70 -9.27 -39.24 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -7.59 Total: 6.41 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: -2.63 Total: 8.29 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: -0.30 Total: -51.96 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: 0.18 Total: -23.06 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.97 -9.27 -39.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413359191.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.597 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds