Wall clock time and date at job start Wed Apr 1 2020 03:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 N 1.46500 * 109.46998 * 179.97438 * 3 2 1 5 5 C 1.46762 * 124.35153 * 89.99716 * 4 3 2 6 6 C 1.54472 * 105.47547 * 162.98572 * 5 4 3 7 7 H 1.08997 * 110.97349 * 267.26422 * 6 5 4 8 8 C 1.50697 * 110.97090 * 143.53555 * 6 5 4 9 9 O 1.21284 * 120.00291 * 0.02562 * 8 6 5 10 10 N 1.34780 * 120.00159 * 179.97438 * 8 6 5 11 11 C 1.46496 * 120.00060 * 0.02562 * 10 8 6 12 12 C 1.50700 * 109.47363 * 89.99457 * 11 10 8 13 13 H 1.08006 * 120.00001 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00246 * 179.97438 * 12 11 10 15 15 N 1.31521 * 120.00213 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00116 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47356 * 90.00290 * 16 14 12 18 18 H 1.48497 * 109.47189 * 210.00216 * 16 14 12 19 19 H 1.48498 * 109.47192 * 330.00188 * 16 14 12 20 20 C 1.46497 * 120.00073 * 179.97438 * 10 8 6 21 21 C 1.50701 * 109.47252 * 90.00165 * 20 10 8 22 22 C 1.38226 * 119.61762 * 94.72617 * 21 20 10 23 23 C 1.38631 * 119.16385 * 179.71410 * 22 21 20 24 24 C 1.38673 * 118.41735 * 0.55091 * 23 22 21 25 25 C 1.38177 * 119.16111 * 359.73465 * 24 23 22 26 26 N 1.31854 * 119.62203 * 275.00167 * 21 20 10 27 27 C 1.54629 * 101.76491 * 25.41913 * 6 5 4 28 28 C 1.34427 * 124.34965 * 269.70266 * 4 3 2 29 29 O 1.21278 * 124.93859 * 0.38965 * 28 4 3 30 30 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 31 31 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 32 32 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 34 34 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 35 35 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 36 36 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 37 37 H 1.09005 * 110.24554 * 281.98783 * 5 4 3 38 38 H 1.08997 * 110.24452 * 43.98250 * 5 4 3 39 39 H 1.08996 * 109.47266 * 209.99632 * 11 10 8 40 40 H 1.08996 * 109.46916 * 329.99829 * 11 10 8 41 41 H 0.96995 * 120.00499 * 179.97438 * 15 14 12 42 42 H 1.08998 * 109.47439 * 210.00233 * 20 10 8 43 43 H 1.08999 * 109.47396 * 330.00804 * 20 10 8 44 44 H 1.08005 * 120.41909 * 359.97438 * 22 21 20 45 45 H 1.08002 * 120.79128 * 180.25973 * 23 22 21 46 46 H 1.07993 * 120.42098 * 179.74981 * 24 23 22 47 47 H 1.08009 * 119.61604 * 179.97438 * 25 24 23 48 48 H 1.08993 * 110.48787 * 93.88069 * 27 6 5 49 49 H 1.09004 * 110.48551 * 216.52724 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.3335 1.4425 -1.2107 6 6 5.7412 1.8783 -0.7472 7 1 5.8673 2.9566 -0.8439 8 6 6.8121 1.1423 -1.5102 9 8 6.5042 0.3324 -2.3589 10 7 8.1122 1.3846 -1.2502 11 6 8.4842 2.3632 -0.2255 12 6 8.6067 1.6722 1.1082 13 1 8.4259 0.6101 1.1847 14 6 8.9505 2.3955 2.2304 15 7 9.1712 3.6887 2.1372 16 14 9.1029 1.5388 3.8834 17 1 10.4974 1.0625 4.0674 18 1 8.7583 2.4921 4.9686 19 1 8.1743 0.3809 3.9283 20 6 9.1533 0.6687 -1.9916 21 6 9.5157 1.4490 -3.2289 22 6 10.5887 2.3198 -3.1975 23 6 10.9175 3.0284 -4.3428 24 6 10.1441 2.8423 -5.4786 25 6 9.0825 1.9591 -5.4331 26 7 8.8023 1.2972 -4.3273 27 6 5.7294 1.4529 0.7394 28 6 4.2629 1.4487 1.1108 29 8 3.8335 1.4479 2.2450 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 1.6764 1.9564 0.8900 37 1 4.3712 0.4420 -1.6417 38 1 3.9391 2.1525 -1.9376 39 1 9.4391 2.8187 -0.4877 40 1 7.7175 3.1356 -0.1654 41 1 9.4127 4.1977 2.9268 42 1 10.0357 0.5560 -1.3617 43 1 8.7835 -0.3157 -2.2784 44 1 11.1664 2.4435 -2.2933 45 1 11.7531 3.7125 -4.3488 46 1 10.3688 3.3808 -6.3874 47 1 8.4750 1.8089 -6.3135 48 1 6.1590 0.4579 0.8549 49 1 6.2719 2.1767 1.3476 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413359191.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:49 Heat of formation + Delta-G solvation = -53.090682 kcal Electronic energy + Delta-G solvation = -31087.732282 eV Core-core repulsion = 27013.894795 eV Total energy + Delta-G solvation = -4073.837486 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.93560 -41.09633 -40.09242 -37.50393 -36.82227 -35.77010 -34.64897 -33.36308 -32.95536 -32.04520 -29.37959 -28.79801 -27.88934 -26.90517 -24.96138 -24.28451 -24.00653 -22.73362 -22.58661 -20.52302 -19.87089 -18.65354 -18.36147 -17.80642 -17.59801 -17.12713 -17.10649 -16.72346 -16.47786 -16.40417 -15.99101 -15.62393 -15.46761 -14.90530 -14.73906 -14.57545 -14.47984 -14.25480 -14.15874 -13.85693 -13.82692 -13.68748 -13.29838 -13.05631 -13.04666 -12.74978 -12.71767 -12.62403 -12.48446 -12.45978 -12.27172 -12.19919 -11.97591 -11.66892 -11.65449 -11.06671 -10.75066 -10.65002 -10.48813 -10.30284 -9.89728 -9.73679 -9.45139 -8.17211 -6.26213 0.18938 0.45758 1.40300 1.47138 1.48378 1.52674 1.73122 1.94379 2.27988 2.45356 3.03154 3.14938 3.31521 3.44602 3.50475 3.75543 3.89521 3.94693 4.01386 4.04756 4.08211 4.19510 4.28038 4.31762 4.34674 4.52683 4.57263 4.58114 4.64766 4.66513 4.69525 4.84731 4.87279 4.91192 4.92661 5.02265 5.10402 5.14337 5.19423 5.26855 5.29545 5.33995 5.34727 5.60343 5.69624 5.83692 5.87044 6.01559 6.09553 6.57487 6.85069 7.09275 7.19137 7.31340 7.45388 8.88054 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007842 B = 0.004363 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3569.482290 B = 6416.501896 C = 9412.375424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.139 4.139 3 C 0.121 3.879 4 N -0.613 5.613 5 C 0.127 3.873 6 C -0.108 4.108 7 H 0.116 0.884 8 C 0.527 3.473 9 O -0.564 6.564 10 N -0.588 5.588 11 C 0.255 3.745 12 C -0.528 4.528 13 H 0.056 0.944 14 C 0.035 3.965 15 N -0.914 5.914 16 Si 0.932 3.068 17 H -0.272 1.272 18 H -0.289 1.289 19 H -0.276 1.276 20 C 0.168 3.832 21 C 0.096 3.904 22 C -0.166 4.166 23 C -0.079 4.079 24 C -0.166 4.166 25 C 0.079 3.921 26 N -0.495 5.495 27 C -0.121 4.121 28 C 0.514 3.486 29 O -0.576 6.576 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.038 0.962 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.027 0.973 40 H 0.029 0.971 41 H 0.265 0.735 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.137 0.863 45 H 0.162 0.838 46 H 0.168 0.832 47 H 0.173 0.827 48 H 0.093 0.907 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.801 -0.119 -13.896 14.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.178 4.178 3 C 0.000 4.000 4 N -0.346 5.346 5 C 0.005 3.995 6 C -0.129 4.129 7 H 0.134 0.866 8 C 0.315 3.685 9 O -0.444 6.444 10 N -0.318 5.318 11 C 0.134 3.866 12 C -0.567 4.567 13 H 0.074 0.926 14 C -0.166 4.166 15 N -0.553 5.553 16 Si 0.759 3.241 17 H -0.198 1.198 18 H -0.215 1.215 19 H -0.201 1.201 20 C 0.045 3.955 21 C -0.042 4.042 22 C -0.187 4.187 23 C -0.105 4.105 24 C -0.186 4.186 25 C -0.079 4.079 26 N -0.205 5.205 27 C -0.162 4.162 28 C 0.303 3.697 29 O -0.457 6.457 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.129 0.871 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.127 0.873 39 H 0.045 0.955 40 H 0.047 0.953 41 H 0.075 0.925 42 H 0.118 0.882 43 H 0.096 0.904 44 H 0.155 0.845 45 H 0.180 0.820 46 H 0.186 0.814 47 H 0.190 0.810 48 H 0.111 0.889 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.915 -0.963 -13.629 14.889 hybrid contribution 1.205 0.261 1.487 1.932 sum -4.710 -0.702 -12.143 13.043 Atomic orbital electron populations 1.21652 0.93032 1.02608 1.02697 1.21879 0.97830 0.96444 1.01600 1.21680 0.76428 0.97804 1.04084 1.48466 1.07129 1.72258 1.06733 1.21997 0.87239 1.03817 0.86467 1.22031 0.94169 1.02122 0.94608 0.86594 1.20166 0.83751 0.82329 0.82241 1.90634 1.82280 1.36597 1.34871 1.48063 1.04647 1.41853 1.37262 1.19135 0.96239 0.86761 0.84455 1.21567 1.46987 0.95094 0.93029 0.92568 1.25333 0.94989 0.95098 1.01139 1.69965 1.47623 1.06970 1.30741 0.85940 0.78484 0.78669 0.80988 1.19786 1.21492 1.20127 1.20146 0.92078 0.94520 0.88777 1.21624 0.92372 0.96299 0.93937 1.22210 0.98518 0.97391 1.00547 1.21963 0.99406 0.97252 0.91899 1.22504 0.96076 0.99496 1.00496 1.23264 0.96062 0.92651 0.95902 1.67548 1.28693 1.24280 0.99958 1.22267 0.92951 1.05038 0.95929 1.21257 0.89991 0.74169 0.84326 1.90639 1.79381 1.52789 1.22848 0.92638 0.90772 0.91900 0.91295 0.94328 0.87140 0.91075 0.89828 0.87313 0.95535 0.95274 0.92539 0.88230 0.90355 0.84466 0.82001 0.81409 0.80966 0.88913 0.87323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.91 71.98 0.71 -1.60 16 2 C -0.14 -3.09 6.26 30.60 0.19 -2.89 16 3 C 0.12 2.85 5.93 86.38 0.51 3.36 16 4 N -0.61 -18.49 2.93 -817.99 -2.40 -20.88 16 5 C 0.13 3.60 6.71 86.83 0.58 4.18 16 6 C -0.11 -3.67 2.54 -10.49 -0.03 -3.70 16 7 H 0.12 3.80 7.25 -2.39 -0.02 3.78 16 8 C 0.53 20.25 6.95 87.66 0.61 20.86 16 9 O -0.56 -23.30 15.08 -3.04 -0.05 -23.35 16 10 N -0.59 -22.95 2.44 -830.53 -2.03 -24.97 16 11 C 0.25 11.04 4.71 85.63 0.40 11.44 16 12 C -0.53 -25.14 6.39 25.60 0.16 -24.98 16 13 H 0.06 2.74 7.53 -2.91 -0.02 2.72 16 14 C 0.04 1.77 5.44 84.65 0.46 2.23 16 15 N -0.91 -47.97 13.29 21.45 0.28 -47.69 16 16 Si 0.93 41.74 29.54 68.60 2.03 43.77 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 18 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 C 0.17 6.02 5.71 85.63 0.49 6.51 16 21 C 0.10 3.15 6.36 42.55 0.27 3.42 16 22 C -0.17 -4.64 9.72 22.36 0.22 -4.42 16 23 C -0.08 -1.71 10.18 22.47 0.23 -1.48 16 24 C -0.17 -3.25 10.11 22.36 0.23 -3.02 16 25 C 0.08 1.95 11.18 84.67 0.95 2.90 16 26 N -0.49 -16.37 10.27 -183.88 -1.89 -18.26 16 27 C -0.12 -4.74 4.47 30.59 0.14 -4.60 16 28 C 0.51 19.82 8.02 87.89 0.70 20.53 16 29 O -0.58 -26.32 17.59 -3.02 -0.05 -26.37 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.11 1.86 8.14 -2.39 -0.02 1.85 16 36 H 0.07 1.83 7.92 -2.39 -0.02 1.81 16 37 H 0.08 2.52 6.96 -2.38 -0.02 2.50 16 38 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.03 1.21 8.07 -2.39 -0.02 1.19 16 40 H 0.03 1.33 6.11 -2.39 -0.01 1.31 16 41 H 0.27 13.51 8.31 -92.71 -0.77 12.74 16 42 H 0.10 3.35 7.97 -2.39 -0.02 3.33 16 43 H 0.08 2.94 7.42 -2.39 -0.02 2.93 16 44 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 45 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 46 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 47 H 0.17 3.25 8.06 -2.91 -0.02 3.22 16 48 H 0.09 3.83 7.47 -2.39 -0.02 3.82 16 49 H 0.11 4.83 6.38 -2.38 -0.02 4.82 16 Total: -1.00 -66.40 403.70 3.67 -62.73 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 0.94 Total: 26.30 kcal Atomic # 6 Polarization: 21.90 SS G_CDS: 6.83 Total: 28.73 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -6.03 Total: -111.81 kcal Atomic # 8 Polarization: -49.62 SS G_CDS: -0.10 Total: -49.72 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -66.40 3.67 -62.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413359191.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.642 kcal (2) G-P(sol) polarization free energy of solvation -66.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds