Wall clock time and date at job start Wed Apr 1 2020 03:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47168 * 2 1 4 4 H 1.09002 * 109.46630 * 54.52219 * 3 2 1 5 5 C 1.50696 * 109.46993 * 174.52048 * 3 2 1 6 6 O 1.21277 * 120.00011 * 95.61706 * 5 3 2 7 7 N 1.34778 * 120.00176 * 275.60912 * 5 3 2 8 8 C 1.46502 * 119.99656 * 5.11580 * 7 5 3 9 9 C 1.50696 * 109.47066 * 95.51628 * 8 7 5 10 10 H 1.08002 * 120.00187 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99809 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99973 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 120.00340 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47111 * 89.99759 * 13 11 9 15 15 H 1.48493 * 109.47532 * 210.00159 * 13 11 9 16 16 H 1.48504 * 109.46979 * 330.00320 * 13 11 9 17 17 C 1.46494 * 120.00131 * 185.11180 * 7 5 3 18 18 C 1.50704 * 109.47250 * 90.00320 * 17 7 5 19 19 C 1.38678 * 120.41913 * 269.72510 * 18 17 7 20 20 C 1.38630 * 118.42141 * 179.77918 * 19 18 17 21 21 C 1.38225 * 119.15868 * 0.51241 * 20 19 18 22 22 N 1.31855 * 120.76383 * 359.72171 * 21 20 19 23 23 C 1.31882 * 121.72678 * 0.02562 * 22 21 20 24 24 N 1.46495 * 109.47216 * 294.52355 * 3 2 1 25 25 C 1.46768 * 124.34891 * 119.99830 * 24 3 2 26 26 C 1.54482 * 105.47353 * 197.01309 * 25 24 3 27 27 C 1.54634 * 101.76494 * 334.58949 * 26 25 24 28 28 C 1.34416 * 124.35123 * 299.69719 * 24 3 2 29 29 O 1.21283 * 124.94318 * 359.57073 * 28 24 3 30 30 H 1.09001 * 109.47026 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47110 * 59.99915 * 1 2 3 32 32 H 1.08995 * 109.46963 * 299.99718 * 1 2 3 33 33 H 1.09000 * 109.46963 * 120.00499 * 2 1 3 34 34 H 1.09002 * 109.46578 * 240.00306 * 2 1 3 35 35 H 1.09003 * 109.46924 * 215.51020 * 8 7 5 36 36 H 1.08996 * 109.47602 * 335.51006 * 8 7 5 37 37 H 0.97001 * 120.00097 * 179.97438 * 12 11 9 38 38 H 1.08997 * 109.47353 * 210.00102 * 17 7 5 39 39 H 1.09003 * 109.47571 * 330.00571 * 17 7 5 40 40 H 1.08001 * 120.78726 * 0.02562 * 19 18 17 41 41 H 1.07997 * 120.41971 * 180.21940 * 20 19 18 42 42 H 1.07999 * 119.61620 * 179.74750 * 21 20 19 43 43 H 1.08006 * 119.61735 * 179.97438 * 23 22 21 44 44 H 1.08999 * 110.25012 * 316.01825 * 25 24 3 45 45 H 1.09001 * 110.24257 * 78.01924 * 25 24 3 46 46 H 1.09002 * 110.96642 * 92.70235 * 26 25 24 47 47 H 1.08998 * 110.97063 * 216.46564 * 26 25 24 48 48 H 1.08995 * 110.48654 * 143.47655 * 27 26 25 49 49 H 1.09000 * 110.47920 * 265.98207 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5988 1.9838 0.8369 5 6 3.5409 1.4446 0.1357 6 8 4.2391 1.5149 -0.8535 7 7 4.1073 1.3685 1.3563 8 6 3.2693 1.1710 2.5416 9 6 3.2181 -0.2962 2.8818 10 1 3.7564 -1.0101 2.2759 11 6 2.4850 -0.7270 3.9671 12 7 2.4399 -2.0075 4.2637 13 14 1.5559 0.5080 5.0163 14 1 0.1845 0.6850 4.4747 15 1 1.4760 0.0101 6.4130 16 1 2.2684 1.8107 4.9952 17 6 5.5609 1.4832 1.4977 18 6 5.9341 2.9303 1.6921 19 6 6.2183 3.7351 0.5992 20 6 6.5524 5.0614 0.8255 21 6 6.6014 5.5313 2.1245 22 7 6.3296 4.7357 3.1402 23 6 6.0033 3.4704 2.9621 24 7 1.6624 2.0940 -1.2566 25 6 0.8181 3.2911 -1.3476 26 6 0.3415 3.3487 -2.8159 27 6 1.4646 2.5729 -3.5426 28 6 2.0492 1.6756 -2.4740 29 8 2.7611 0.7167 -2.6853 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 3.6911 1.7240 3.3809 36 1 2.2613 1.5322 2.3383 37 1 1.9245 -2.3105 5.0275 38 1 5.8888 0.9043 2.3610 39 1 6.0448 1.1009 0.5989 40 1 6.1764 3.3391 -0.4048 41 1 6.7763 5.7178 -0.0024 42 1 6.8648 6.5622 2.3095 43 1 5.7878 2.8491 3.8188 44 1 -0.0364 3.2020 -0.6768 45 1 1.3984 4.1812 -1.1042 46 1 -0.6188 2.8467 -2.9342 47 1 0.2877 4.3787 -3.1685 48 1 1.0521 1.9800 -4.3589 49 1 2.2226 3.2608 -3.9171 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415191698.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:30 Heat of formation + Delta-G solvation = -24.758360 kcal Electronic energy + Delta-G solvation = -32194.665911 eV Core-core repulsion = 28122.057006 eV Total energy + Delta-G solvation = -4072.608905 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.61645 -40.01818 -38.68465 -36.03738 -35.33709 -34.55165 -32.95193 -32.21217 -31.42331 -30.77445 -28.22073 -27.57106 -27.34528 -25.42884 -23.44598 -22.52984 -22.21980 -21.80112 -21.67092 -19.67143 -18.01750 -17.30464 -16.96977 -16.83084 -16.50544 -16.20361 -15.67442 -15.35676 -15.27020 -14.89076 -14.37323 -14.15353 -13.87243 -13.59061 -13.51175 -13.32521 -13.09311 -13.01441 -12.84348 -12.73624 -12.59662 -12.48970 -12.30079 -11.97072 -11.85544 -11.54024 -11.41262 -11.26518 -11.04765 -11.02236 -10.83320 -10.67851 -10.45445 -10.36277 -9.74148 -9.65792 -9.40975 -9.33421 -9.18355 -8.89040 -8.77785 -8.25445 -7.85459 -6.27947 -4.29864 1.20274 1.42481 2.94341 3.09519 3.11230 3.20089 3.22581 3.30171 3.75602 4.13419 4.20119 4.45731 4.46654 4.57168 4.74437 4.93297 5.00045 5.04920 5.08196 5.10079 5.18170 5.24491 5.29942 5.38890 5.44453 5.54167 5.57487 5.61088 5.74459 5.76004 5.80604 5.90099 5.91648 6.00459 6.14248 6.17003 6.26570 6.31054 6.43451 6.47823 6.51439 6.57918 6.83149 6.84281 6.96075 7.20696 7.35954 7.48198 8.00820 8.08686 8.33058 8.58181 8.77091 8.87252 9.30536 10.83981 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007029 B = 0.006096 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3982.562536 B = 4591.847405 C = 7327.214953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.143 4.143 3 C 0.151 3.849 4 H 0.104 0.896 5 C 0.509 3.491 6 O -0.535 6.535 7 N -0.587 5.587 8 C 0.207 3.793 9 C -0.541 4.541 10 H 0.082 0.918 11 C 0.081 3.919 12 N -0.885 5.885 13 Si 0.864 3.136 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.263 1.263 17 C 0.161 3.839 18 C -0.144 4.144 19 C -0.057 4.057 20 C -0.180 4.180 21 C 0.089 3.911 22 N -0.490 5.490 23 C 0.112 3.888 24 N -0.610 5.610 25 C 0.103 3.897 26 C -0.129 4.129 27 C -0.155 4.155 28 C 0.520 3.480 29 O -0.501 6.501 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.117 0.883 34 H 0.074 0.926 35 H 0.032 0.968 36 H 0.029 0.971 37 H 0.267 0.733 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.136 0.864 41 H 0.129 0.871 42 H 0.150 0.850 43 H 0.157 0.843 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.086 0.914 48 H 0.096 0.904 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.593 14.202 -8.933 16.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.182 4.182 3 C 0.045 3.955 4 H 0.122 0.878 5 C 0.295 3.705 6 O -0.412 6.412 7 N -0.318 5.318 8 C 0.086 3.914 9 C -0.579 4.579 10 H 0.100 0.900 11 C -0.123 4.123 12 N -0.521 5.521 13 Si 0.690 3.310 14 H -0.198 1.198 15 H -0.208 1.208 16 H -0.188 1.188 17 C 0.037 3.963 18 C -0.147 4.147 19 C -0.083 4.083 20 C -0.200 4.200 21 C -0.068 4.068 22 N -0.198 5.198 23 C -0.045 4.045 24 N -0.346 5.346 25 C -0.020 4.020 26 C -0.167 4.167 27 C -0.196 4.196 28 C 0.307 3.693 29 O -0.374 6.374 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.135 0.865 34 H 0.093 0.907 35 H 0.050 0.950 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.154 0.846 41 H 0.147 0.853 42 H 0.167 0.833 43 H 0.175 0.825 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.099 0.901 47 H 0.105 0.895 48 H 0.114 0.886 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.861 13.854 -8.512 16.366 hybrid contribution -0.694 0.353 0.016 0.779 sum -2.555 14.207 -8.496 16.750 Atomic orbital electron populations 1.21638 0.95633 1.01613 1.00661 1.22017 0.96117 0.93783 1.06234 1.20905 0.92562 0.96440 0.85547 0.87828 1.20680 0.90448 0.76328 0.83063 1.90660 1.63847 1.49874 1.36826 1.47881 1.06118 1.70392 1.07424 1.19892 0.89950 0.98283 0.83314 1.21304 1.32294 0.90707 1.13594 0.89983 1.24840 0.95819 0.94938 0.96724 1.69882 1.40499 1.13804 1.27955 0.87038 0.81020 0.82251 0.80686 1.19788 1.20760 1.18765 1.20124 0.82047 0.90116 1.03976 1.21477 1.00078 0.98868 0.94281 1.21670 0.93765 0.93170 0.99705 1.22106 1.02811 0.96552 0.98509 1.22692 0.96174 0.99364 0.88545 1.67702 1.11481 1.05122 1.35496 1.22804 0.94039 0.91245 0.96423 1.48085 1.51556 1.29068 1.05876 1.22045 0.94425 0.87887 0.97673 1.22552 0.98566 1.01486 0.94085 1.22320 0.99241 0.99634 0.98382 1.20604 0.79899 0.84868 0.83956 1.90730 1.35402 1.27881 1.83431 0.92532 0.93727 0.92940 0.86471 0.90714 0.94958 0.95337 0.92255 0.88657 0.89478 0.84593 0.85260 0.83258 0.82547 0.90462 0.91648 0.90085 0.89545 0.88551 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.80 37.16 0.36 -1.78 16 2 C -0.14 -2.69 5.29 -26.73 -0.14 -2.83 16 3 C 0.15 2.68 1.87 -69.09 -0.13 2.55 16 4 H 0.10 1.71 6.17 -51.93 -0.32 1.39 16 5 C 0.51 10.23 6.82 -10.99 -0.07 10.16 16 6 O -0.54 -11.90 13.42 -16.59 -0.22 -12.13 16 7 N -0.59 -11.49 2.44 -176.44 -0.43 -11.92 16 8 C 0.21 4.28 3.93 -5.19 -0.02 4.26 16 9 C -0.54 -13.29 7.95 -34.44 -0.27 -13.56 16 10 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 11 C 0.08 2.07 5.47 -17.82 -0.10 1.98 16 12 N -0.88 -24.57 13.96 55.43 0.77 -23.80 16 13 Si 0.86 18.86 27.47 -169.99 -4.67 14.19 16 14 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 16 H -0.26 -5.47 6.54 56.52 0.37 -5.10 16 17 C 0.16 2.85 5.62 -5.19 -0.03 2.82 16 18 C -0.14 -2.30 5.48 -104.48 -0.57 -2.87 16 19 C -0.06 -0.84 9.86 -39.27 -0.39 -1.23 16 20 C -0.18 -2.26 10.11 -39.44 -0.40 -2.66 16 21 C 0.09 1.16 11.18 -17.55 -0.20 0.96 16 22 N -0.49 -7.60 10.36 -13.25 -0.14 -7.74 16 23 C 0.11 1.77 10.86 -17.55 -0.19 1.58 16 24 N -0.61 -9.34 2.25 -166.16 -0.37 -9.72 16 25 C 0.10 1.09 7.30 -3.12 -0.02 1.07 16 26 C -0.13 -1.05 7.18 -25.09 -0.18 -1.23 16 27 C -0.16 -1.72 6.86 -26.74 -0.18 -1.91 16 28 C 0.52 8.71 6.79 -10.86 -0.07 8.63 16 29 O -0.50 -10.81 14.54 -16.59 -0.24 -11.05 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.62 7.77 -51.93 -0.40 0.22 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.12 2.54 5.70 -51.93 -0.30 2.24 16 34 H 0.07 1.56 6.66 -51.93 -0.35 1.21 16 35 H 0.03 0.67 7.17 -51.93 -0.37 0.29 16 36 H 0.03 0.57 5.07 -51.93 -0.26 0.31 16 37 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.10 1.65 8.02 -51.93 -0.42 1.23 16 39 H 0.09 1.59 7.31 -51.93 -0.38 1.21 16 40 H 0.14 2.10 7.97 -52.49 -0.42 1.68 16 41 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 42 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 43 H 0.16 2.37 8.06 -52.48 -0.42 1.95 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 395.10 15.07 5.95 5.95 Total: -1.00 -32.42 395.10 -9.41 -41.83 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -7.46 Total: 8.45 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -2.61 Total: 5.92 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.17 Total: -53.17 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.46 Total: -23.18 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -4.67 Total: 14.19 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.42 -9.41 -41.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415191698.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.073 kcal (2) G-P(sol) polarization free energy of solvation -32.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds