Wall clock time and date at job start Wed Apr 1 2020 03:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47168 * 2 1 4 4 H 1.09002 * 109.46630 * 54.52219 * 3 2 1 5 5 C 1.50696 * 109.46993 * 174.52048 * 3 2 1 6 6 O 1.21277 * 120.00011 * 95.61706 * 5 3 2 7 7 N 1.34778 * 120.00176 * 275.60912 * 5 3 2 8 8 C 1.46502 * 119.99656 * 5.11580 * 7 5 3 9 9 C 1.50696 * 109.47066 * 95.51628 * 8 7 5 10 10 H 1.08002 * 120.00187 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99809 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99973 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 120.00340 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47111 * 89.99759 * 13 11 9 15 15 H 1.48493 * 109.47532 * 210.00159 * 13 11 9 16 16 H 1.48504 * 109.46979 * 330.00320 * 13 11 9 17 17 C 1.46494 * 120.00131 * 185.11180 * 7 5 3 18 18 C 1.50704 * 109.47250 * 90.00320 * 17 7 5 19 19 C 1.38678 * 120.41913 * 269.72510 * 18 17 7 20 20 C 1.38630 * 118.42141 * 179.77918 * 19 18 17 21 21 C 1.38225 * 119.15868 * 0.51241 * 20 19 18 22 22 N 1.31855 * 120.76383 * 359.72171 * 21 20 19 23 23 C 1.31882 * 121.72678 * 0.02562 * 22 21 20 24 24 N 1.46495 * 109.47216 * 294.52355 * 3 2 1 25 25 C 1.46768 * 124.34891 * 119.99830 * 24 3 2 26 26 C 1.54482 * 105.47353 * 197.01309 * 25 24 3 27 27 C 1.54634 * 101.76494 * 334.58949 * 26 25 24 28 28 C 1.34416 * 124.35123 * 299.69719 * 24 3 2 29 29 O 1.21283 * 124.94318 * 359.57073 * 28 24 3 30 30 H 1.09001 * 109.47026 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47110 * 59.99915 * 1 2 3 32 32 H 1.08995 * 109.46963 * 299.99718 * 1 2 3 33 33 H 1.09000 * 109.46963 * 120.00499 * 2 1 3 34 34 H 1.09002 * 109.46578 * 240.00306 * 2 1 3 35 35 H 1.09003 * 109.46924 * 215.51020 * 8 7 5 36 36 H 1.08996 * 109.47602 * 335.51006 * 8 7 5 37 37 H 0.97001 * 120.00097 * 179.97438 * 12 11 9 38 38 H 1.08997 * 109.47353 * 210.00102 * 17 7 5 39 39 H 1.09003 * 109.47571 * 330.00571 * 17 7 5 40 40 H 1.08001 * 120.78726 * 0.02562 * 19 18 17 41 41 H 1.07997 * 120.41971 * 180.21940 * 20 19 18 42 42 H 1.07999 * 119.61620 * 179.74750 * 21 20 19 43 43 H 1.08006 * 119.61735 * 179.97438 * 23 22 21 44 44 H 1.08999 * 110.25012 * 316.01825 * 25 24 3 45 45 H 1.09001 * 110.24257 * 78.01924 * 25 24 3 46 46 H 1.09002 * 110.96642 * 92.70235 * 26 25 24 47 47 H 1.08998 * 110.97063 * 216.46564 * 26 25 24 48 48 H 1.08995 * 110.48654 * 143.47655 * 27 26 25 49 49 H 1.09000 * 110.47920 * 265.98207 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5988 1.9838 0.8369 5 6 3.5409 1.4446 0.1357 6 8 4.2391 1.5149 -0.8535 7 7 4.1073 1.3685 1.3563 8 6 3.2693 1.1710 2.5416 9 6 3.2181 -0.2962 2.8818 10 1 3.7564 -1.0101 2.2759 11 6 2.4850 -0.7270 3.9671 12 7 2.4399 -2.0075 4.2637 13 14 1.5559 0.5080 5.0163 14 1 0.1845 0.6850 4.4747 15 1 1.4760 0.0101 6.4130 16 1 2.2684 1.8107 4.9952 17 6 5.5609 1.4832 1.4977 18 6 5.9341 2.9303 1.6921 19 6 6.2183 3.7351 0.5992 20 6 6.5524 5.0614 0.8255 21 6 6.6014 5.5313 2.1245 22 7 6.3296 4.7357 3.1402 23 6 6.0033 3.4704 2.9621 24 7 1.6624 2.0940 -1.2566 25 6 0.8181 3.2911 -1.3476 26 6 0.3415 3.3487 -2.8159 27 6 1.4646 2.5729 -3.5426 28 6 2.0492 1.6756 -2.4740 29 8 2.7611 0.7167 -2.6853 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 3.6911 1.7240 3.3809 36 1 2.2613 1.5322 2.3383 37 1 1.9245 -2.3105 5.0275 38 1 5.8888 0.9043 2.3610 39 1 6.0448 1.1009 0.5989 40 1 6.1764 3.3391 -0.4048 41 1 6.7763 5.7178 -0.0024 42 1 6.8648 6.5622 2.3095 43 1 5.7878 2.8491 3.8188 44 1 -0.0364 3.2020 -0.6768 45 1 1.3984 4.1812 -1.1042 46 1 -0.6188 2.8467 -2.9342 47 1 0.2877 4.3787 -3.1685 48 1 1.0521 1.9800 -4.3589 49 1 2.2226 3.2608 -3.9171 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415191698.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:29 Heat of formation + Delta-G solvation = -43.658420 kcal Electronic energy + Delta-G solvation = -32195.485479 eV Core-core repulsion = 28122.057006 eV Total energy + Delta-G solvation = -4073.428473 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.93520 -41.17141 -40.08728 -37.32690 -36.96664 -35.84623 -34.70325 -33.60628 -32.62687 -31.91214 -29.96448 -28.85818 -28.36692 -26.77546 -24.74685 -24.20600 -23.47672 -22.98874 -22.65211 -21.03773 -19.45659 -19.07220 -18.43675 -17.99920 -17.87606 -17.30400 -16.88254 -16.72920 -16.66384 -16.14824 -16.04621 -15.47602 -15.19963 -14.91839 -14.69920 -14.55977 -14.41347 -14.31740 -14.20761 -13.99433 -13.85232 -13.76084 -13.51734 -13.38561 -13.24516 -12.95032 -12.68950 -12.66086 -12.41977 -12.35644 -12.13385 -12.02434 -11.94781 -11.75119 -11.64644 -10.98956 -10.78538 -10.73416 -10.50261 -10.48767 -10.04120 -9.57709 -9.46812 -8.27281 -6.34186 0.07731 0.27808 1.39685 1.43518 1.51397 1.58645 1.75676 1.94329 2.35396 2.41478 2.91355 3.05718 3.43942 3.49775 3.58823 3.69721 3.81996 3.89132 3.90432 3.99386 4.03231 4.06371 4.10131 4.27857 4.40696 4.41290 4.52225 4.59901 4.66744 4.68776 4.69531 4.72339 4.77930 4.80422 4.85333 4.89614 5.10082 5.12167 5.15119 5.18560 5.26170 5.32958 5.36575 5.43121 5.54611 5.67406 5.73274 6.17303 6.32160 6.55721 6.70676 6.96966 7.18690 7.31315 7.41541 8.88665 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007029 B = 0.006096 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3982.562536 B = 4591.847405 C = 7327.214953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.135 4.135 3 C 0.154 3.846 4 H 0.122 0.878 5 C 0.500 3.500 6 O -0.561 6.561 7 N -0.590 5.590 8 C 0.218 3.782 9 C -0.532 4.532 10 H 0.029 0.971 11 C 0.027 3.973 12 N -0.938 5.938 13 Si 0.929 3.071 14 H -0.255 1.255 15 H -0.288 1.288 16 H -0.239 1.239 17 C 0.163 3.837 18 C -0.153 4.153 19 C -0.066 4.066 20 C -0.166 4.166 21 C 0.094 3.906 22 N -0.506 5.506 23 C 0.104 3.896 24 N -0.610 5.610 25 C 0.092 3.908 26 C -0.111 4.111 27 C -0.147 4.147 28 C 0.501 3.499 29 O -0.566 6.566 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.042 0.958 35 H 0.044 0.956 36 H 0.047 0.953 37 H 0.268 0.732 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.124 0.876 41 H 0.165 0.835 42 H 0.189 0.811 43 H 0.155 0.845 44 H 0.098 0.902 45 H 0.075 0.925 46 H 0.096 0.904 47 H 0.121 0.879 48 H 0.107 0.893 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.691 19.147 -9.138 21.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.174 4.174 3 C 0.047 3.953 4 H 0.139 0.861 5 C 0.287 3.713 6 O -0.440 6.440 7 N -0.320 5.320 8 C 0.096 3.904 9 C -0.571 4.571 10 H 0.047 0.953 11 C -0.172 4.172 12 N -0.578 5.578 13 Si 0.752 3.248 14 H -0.179 1.179 15 H -0.214 1.214 16 H -0.162 1.162 17 C 0.039 3.961 18 C -0.157 4.157 19 C -0.093 4.093 20 C -0.185 4.185 21 C -0.063 4.063 22 N -0.215 5.215 23 C -0.053 4.053 24 N -0.345 5.345 25 C -0.030 4.030 26 C -0.149 4.149 27 C -0.187 4.187 28 C 0.290 3.710 29 O -0.444 6.444 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.142 0.858 41 H 0.183 0.817 42 H 0.206 0.794 43 H 0.173 0.827 44 H 0.117 0.883 45 H 0.093 0.907 46 H 0.115 0.885 47 H 0.139 0.861 48 H 0.126 0.874 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.978 18.853 -8.723 21.151 hybrid contribution 0.099 -1.220 -0.009 1.224 sum -3.879 17.634 -8.731 20.056 Atomic orbital electron populations 1.21576 0.92645 1.02075 1.02296 1.21821 0.98621 0.94198 1.02783 1.20754 0.90702 0.96073 0.87724 0.86063 1.21253 0.91731 0.75651 0.82658 1.90641 1.64774 1.51058 1.37518 1.47951 1.06796 1.70109 1.07181 1.19708 0.91137 0.95511 0.84025 1.21328 1.31091 0.92011 1.12637 0.95265 1.25680 0.96787 0.96710 0.98055 1.70051 1.42267 1.16422 1.29010 0.85984 0.80394 0.80348 0.78094 1.17934 1.21404 1.16245 1.20068 0.81186 0.91992 1.02826 1.21188 1.01812 0.97529 0.95137 1.21676 0.94447 0.94439 0.98724 1.22434 1.00807 0.95553 0.99712 1.23356 0.94313 1.00599 0.88014 1.67749 1.12082 1.04926 1.36708 1.22749 0.94718 0.91795 0.96037 1.48270 1.51608 1.30114 1.04513 1.22464 0.94486 0.85931 1.00080 1.22614 0.97660 1.03148 0.91436 1.22343 1.00390 0.99028 0.96976 1.21734 0.79041 0.84617 0.85621 1.90690 1.38320 1.30852 1.84569 0.92797 0.91614 0.91529 0.90156 0.93912 0.93815 0.93510 0.92303 0.89271 0.91150 0.85846 0.81740 0.79416 0.82732 0.88328 0.90668 0.88518 0.86083 0.87421 0.87360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.88 9.80 71.98 0.71 -3.18 16 2 C -0.14 -5.30 5.29 30.60 0.16 -5.14 16 3 C 0.15 5.46 1.87 44.24 0.08 5.54 16 4 H 0.12 3.79 6.17 -2.39 -0.01 3.77 16 5 C 0.50 20.87 6.82 87.66 0.60 21.47 16 6 O -0.56 -26.31 13.42 18.16 0.24 -26.06 16 7 N -0.59 -23.99 2.44 -830.52 -2.03 -26.02 16 8 C 0.22 9.07 3.93 85.63 0.34 9.41 16 9 C -0.53 -27.42 7.95 25.60 0.20 -27.22 16 10 H 0.03 1.78 8.06 -2.91 -0.02 1.75 16 11 C 0.03 1.42 5.47 84.65 0.46 1.89 16 12 N -0.94 -54.49 13.96 21.45 0.30 -54.19 16 13 Si 0.93 38.22 27.47 68.60 1.88 40.10 16 14 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 15 H -0.29 -12.13 7.11 99.48 0.71 -11.43 16 16 H -0.24 -8.87 6.54 99.48 0.65 -8.22 16 17 C 0.16 6.11 5.62 85.64 0.48 6.59 16 18 C -0.15 -4.94 5.48 -19.77 -0.11 -5.05 16 19 C -0.07 -1.92 9.86 22.47 0.22 -1.70 16 20 C -0.17 -3.66 10.11 22.36 0.23 -3.44 16 21 C 0.09 2.11 11.18 84.69 0.95 3.06 16 22 N -0.51 -14.58 10.36 -195.84 -2.03 -16.61 16 23 C 0.10 3.20 10.86 84.67 0.92 4.12 16 24 N -0.61 -17.93 2.25 -798.21 -1.80 -19.73 16 25 C 0.09 1.58 7.30 86.83 0.63 2.21 16 26 C -0.11 -1.29 7.18 31.65 0.23 -1.06 16 27 C -0.15 -2.90 6.86 30.59 0.21 -2.69 16 28 C 0.50 16.70 6.79 87.90 0.60 17.30 16 29 O -0.57 -25.74 14.54 18.14 0.26 -25.47 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.06 1.69 7.77 -2.38 -0.02 1.68 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.08 3.72 5.70 -2.39 -0.01 3.71 16 34 H 0.04 1.92 6.66 -2.39 -0.02 1.90 16 35 H 0.04 1.75 7.17 -2.39 -0.02 1.74 16 36 H 0.05 1.80 5.07 -2.39 -0.01 1.79 16 37 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 38 H 0.09 3.35 8.02 -2.39 -0.02 3.33 16 39 H 0.07 2.82 7.31 -2.39 -0.02 2.80 16 40 H 0.12 3.89 7.97 -2.91 -0.02 3.86 16 41 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 42 H 0.19 2.70 8.06 -2.91 -0.02 2.68 16 43 H 0.16 4.68 8.06 -2.91 -0.02 4.65 16 44 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -78.11 395.10 4.63 -73.47 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: 0.89 Total: 32.41 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: 6.91 Total: 22.11 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -5.56 Total: -116.55 kcal Atomic # 8 Polarization: -52.05 SS G_CDS: 0.51 Total: -51.54 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 1.88 Total: 40.10 kcal Total: -78.11 4.63 -73.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415191698.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.813 kcal (2) G-P(sol) polarization free energy of solvation -78.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds