Wall clock time and date at job start Wed Apr 1 2020 03:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47028 * 2 1 4 4 H 1.09004 * 109.47111 * 304.57394 * 3 2 1 5 5 C 1.50693 * 109.47443 * 184.57003 * 3 2 1 6 6 O 1.21278 * 120.00089 * 260.17161 * 5 3 2 7 7 N 1.34777 * 120.00374 * 80.16855 * 5 3 2 8 8 C 1.46500 * 119.99479 * 5.44939 * 7 5 3 9 9 C 1.50697 * 109.47398 * 87.87425 * 8 7 5 10 10 H 1.08000 * 119.99787 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00079 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99878 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99795 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47424 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47081 * 120.00150 * 13 11 9 16 16 H 1.48504 * 109.46859 * 239.99704 * 13 11 9 17 17 C 1.46498 * 120.00532 * 185.44721 * 7 5 3 18 18 C 1.50697 * 109.46888 * 89.99964 * 17 7 5 19 19 C 1.38672 * 120.41979 * 269.71924 * 18 17 7 20 20 C 1.38624 * 118.42378 * 179.78577 * 19 18 17 21 21 C 1.38236 * 119.15904 * 0.51725 * 20 19 18 22 22 N 1.31850 * 120.76248 * 359.72145 * 21 20 19 23 23 C 1.31888 * 121.72829 * 0.02562 * 22 21 20 24 24 N 1.46497 * 109.47224 * 64.57005 * 3 2 1 25 25 C 1.46769 * 124.35247 * 240.00303 * 24 3 2 26 26 C 1.54482 * 105.47709 * 197.01344 * 25 24 3 27 27 C 1.54624 * 101.76176 * 334.58400 * 26 25 24 28 28 C 1.34424 * 124.35073 * 59.99760 * 24 3 2 29 29 O 1.21273 * 124.94274 * 359.63173 * 28 24 3 30 30 H 1.09005 * 109.47318 * 299.99808 * 1 2 3 31 31 H 1.08999 * 109.47436 * 60.00033 * 1 2 3 32 32 H 1.08999 * 109.47264 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47521 * 239.99995 * 2 1 3 34 34 H 1.08999 * 109.47436 * 119.99967 * 2 1 3 35 35 H 1.09006 * 109.47248 * 207.87487 * 8 7 5 36 36 H 1.08997 * 109.47379 * 327.86879 * 8 7 5 37 37 H 0.97002 * 119.99637 * 180.02562 * 12 11 9 38 38 H 1.08996 * 109.47347 * 209.99979 * 17 7 5 39 39 H 1.08999 * 109.46824 * 329.99933 * 17 7 5 40 40 H 1.08004 * 120.79119 * 0.02669 * 19 18 17 41 41 H 1.08003 * 120.42505 * 180.22371 * 20 19 18 42 42 H 1.07996 * 119.61898 * 179.75302 * 21 20 19 43 43 H 1.07998 * 119.62044 * 179.97438 * 23 22 21 44 44 H 1.08998 * 110.24775 * 78.01274 * 25 24 3 45 45 H 1.08996 * 110.24383 * 316.01602 * 25 24 3 46 46 H 1.09001 * 110.96507 * 92.69973 * 26 25 24 47 47 H 1.08999 * 110.96800 * 216.46363 * 26 25 24 48 48 H 1.09003 * 110.48916 * 143.47280 * 27 26 25 49 49 H 1.09001 * 110.48616 * 265.98552 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6112 1.9795 -0.8462 5 6 3.5426 1.4441 -0.1132 6 8 4.2252 1.5965 0.8776 7 7 4.1281 1.2762 -1.3155 8 6 3.3072 1.2117 -2.5272 9 6 3.0869 2.6042 -3.0595 10 1 3.5150 3.4525 -2.5462 11 6 2.3386 2.7953 -4.2017 12 7 1.8168 1.7623 -4.8264 13 14 2.0649 4.5215 -4.8609 14 1 2.7507 5.5019 -3.9813 15 1 2.6162 4.6193 -6.2363 16 1 0.6095 4.8156 -4.8890 17 6 5.5852 1.1582 -1.4107 18 6 5.9801 -0.2917 -1.2974 19 6 6.2568 -0.8493 -0.0582 20 6 6.6117 -2.1881 -0.0014 21 6 6.6882 -2.9150 -1.1748 22 7 6.4229 -2.3503 -2.3364 23 6 6.0773 -1.0808 -2.4276 24 7 1.6435 2.1006 1.2474 25 6 0.7980 3.2982 1.3195 26 6 1.0094 3.8670 2.7402 27 6 1.4280 2.6033 3.5267 28 6 2.0073 1.6853 2.4729 29 8 2.6998 0.7161 2.7008 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8177 0.6114 -3.2804 36 1 2.3454 0.7566 -2.2908 37 1 1.2907 1.8968 -5.6302 38 1 5.9197 1.5519 -2.3704 39 1 6.0491 1.7253 -0.6037 40 1 6.1933 -0.2556 0.8418 41 1 6.8305 -2.6563 0.9470 42 1 6.9679 -3.9575 -1.1396 43 1 5.8679 -0.6529 -3.3969 44 1 -0.2483 3.0306 1.1722 45 1 1.1108 4.0263 0.5712 46 1 1.8048 4.6123 2.7475 47 1 0.0829 4.2835 3.1354 48 1 2.1826 2.8510 4.2733 49 1 0.5604 2.1439 4.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415191703.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:34 Heat of formation + Delta-G solvation = -32.643322 kcal Electronic energy + Delta-G solvation = -32147.235012 eV Core-core repulsion = 28074.284190 eV Total energy + Delta-G solvation = -4072.950822 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.52672 -39.88274 -38.56386 -35.97180 -35.19852 -34.57677 -33.01926 -32.07840 -31.25370 -30.75109 -27.75207 -27.38787 -27.16867 -25.32623 -23.40724 -22.87355 -22.06728 -21.74242 -21.69358 -19.59588 -18.00730 -16.91585 -16.77212 -16.67780 -16.40553 -16.14703 -15.72817 -15.28022 -15.06857 -14.67856 -14.36583 -14.20024 -13.87216 -13.59023 -13.39215 -13.28196 -13.01754 -12.91809 -12.74831 -12.66942 -12.48986 -12.33550 -12.07830 -11.79030 -11.67889 -11.49400 -11.42488 -11.18339 -11.02580 -10.96231 -10.89376 -10.71579 -10.62308 -10.26194 -9.84357 -9.54875 -9.35582 -9.20069 -9.10910 -8.76604 -8.65769 -8.17393 -7.79401 -6.26837 -4.35631 1.34841 1.58090 2.95604 3.14527 3.22736 3.24748 3.28183 3.40631 3.88531 4.21749 4.29044 4.56001 4.58511 4.71090 4.87809 5.04561 5.07342 5.14431 5.19769 5.21036 5.30952 5.32607 5.38512 5.46512 5.58799 5.61572 5.64589 5.75251 5.78371 5.79958 5.93237 5.95128 6.02441 6.06751 6.09678 6.19434 6.26756 6.32053 6.42100 6.51702 6.62321 6.68444 6.85391 6.98483 7.11418 7.44912 7.56297 7.67907 7.96008 8.22404 8.24516 8.61989 8.71828 8.98383 9.33306 10.79252 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.006747 B = 0.006022 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4148.923257 B = 4648.713399 C = 7596.287163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 C 0.146 3.854 4 H 0.126 0.874 5 C 0.511 3.489 6 O -0.544 6.544 7 N -0.593 5.593 8 C 0.234 3.766 9 C -0.542 4.542 10 H 0.062 0.938 11 C 0.068 3.932 12 N -0.886 5.886 13 Si 0.894 3.106 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.162 3.838 18 C -0.145 4.145 19 C -0.054 4.054 20 C -0.180 4.180 21 C 0.089 3.911 22 N -0.490 5.490 23 C 0.114 3.886 24 N -0.604 5.604 25 C 0.103 3.897 26 C -0.130 4.130 27 C -0.155 4.155 28 C 0.522 3.478 29 O -0.512 6.512 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.037 0.963 36 H 0.040 0.960 37 H 0.266 0.734 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.136 0.864 41 H 0.129 0.871 42 H 0.149 0.851 43 H 0.157 0.843 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.086 0.914 48 H 0.095 0.905 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.133 -0.294 10.527 10.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.168 4.168 3 C 0.040 3.960 4 H 0.144 0.856 5 C 0.297 3.703 6 O -0.422 6.422 7 N -0.324 5.324 8 C 0.114 3.886 9 C -0.581 4.581 10 H 0.080 0.920 11 C -0.136 4.136 12 N -0.524 5.524 13 Si 0.722 3.278 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.208 1.208 17 C 0.038 3.962 18 C -0.149 4.149 19 C -0.080 4.080 20 C -0.200 4.200 21 C -0.068 4.068 22 N -0.198 5.198 23 C -0.043 4.043 24 N -0.339 5.339 25 C -0.021 4.021 26 C -0.168 4.168 27 C -0.195 4.195 28 C 0.309 3.691 29 O -0.387 6.387 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.154 0.846 41 H 0.147 0.853 42 H 0.167 0.833 43 H 0.174 0.826 44 H 0.089 0.911 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.105 0.895 48 H 0.114 0.886 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.447 -1.315 10.160 10.255 hybrid contribution -0.364 1.492 0.072 1.537 sum -0.811 0.177 10.232 10.265 Atomic orbital electron populations 1.21676 0.95023 1.01455 1.01774 1.21769 0.96685 0.94664 1.03638 1.20940 0.92704 0.95452 0.86941 0.85593 1.20634 0.90327 0.76310 0.83035 1.90629 1.65028 1.49920 1.36630 1.48184 1.05775 1.70363 1.08061 1.19539 0.90532 0.97618 0.80925 1.21525 1.33379 0.92728 1.10444 0.92013 1.24935 0.95217 0.97186 0.96270 1.69932 1.33925 1.29657 1.18886 0.86498 0.78038 0.84269 0.79037 1.19673 1.20772 1.20792 1.20092 0.82331 0.90275 1.03500 1.21437 1.00243 0.99015 0.94161 1.21660 0.93462 0.94846 0.98062 1.22103 1.02747 0.95285 0.99825 1.22680 0.96302 0.99848 0.87979 1.67693 1.11596 1.12214 1.28307 1.22780 0.93892 0.89001 0.98673 1.47978 1.50997 1.29288 1.05622 1.22082 0.94795 0.87130 0.98046 1.22566 1.02710 0.97132 0.94379 1.22306 1.02650 0.96310 0.98271 1.20613 0.79378 0.85127 0.83962 1.90677 1.36543 1.28206 1.83246 0.93151 0.92080 0.92802 0.90231 0.90603 0.94466 0.94185 0.92452 0.89162 0.89898 0.84589 0.85304 0.83324 0.82582 0.91147 0.90193 0.90171 0.89545 0.88618 0.88477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.80 37.15 0.36 -1.70 16 2 C -0.13 -2.25 5.04 -26.73 -0.13 -2.39 16 3 C 0.15 2.68 1.82 -69.09 -0.13 2.55 16 4 H 0.13 2.43 6.57 -51.93 -0.34 2.09 16 5 C 0.51 10.58 6.81 -10.99 -0.07 10.51 16 6 O -0.54 -12.33 13.58 -15.81 -0.21 -12.55 16 7 N -0.59 -12.02 2.44 -176.44 -0.43 -12.45 16 8 C 0.23 5.21 4.76 -5.20 -0.02 5.18 16 9 C -0.54 -13.16 8.95 -34.44 -0.31 -13.46 16 10 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 11 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -23.10 13.29 55.43 0.74 -22.36 16 13 Si 0.89 19.43 29.54 -169.99 -5.02 14.41 16 14 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 15 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 17 C 0.16 2.94 5.59 -5.20 -0.03 2.92 16 18 C -0.15 -2.50 5.48 -104.48 -0.57 -3.07 16 19 C -0.05 -0.89 9.86 -39.28 -0.39 -1.28 16 20 C -0.18 -2.59 10.11 -39.44 -0.40 -2.99 16 21 C 0.09 1.29 11.18 -17.54 -0.20 1.10 16 22 N -0.49 -8.28 10.36 -13.25 -0.14 -8.42 16 23 C 0.11 1.94 10.86 -17.55 -0.19 1.75 16 24 N -0.60 -9.79 2.19 -166.16 -0.36 -10.15 16 25 C 0.10 1.24 7.30 -3.12 -0.02 1.22 16 26 C -0.13 -1.26 7.18 -25.10 -0.18 -1.44 16 27 C -0.15 -1.82 6.86 -26.74 -0.18 -2.00 16 28 C 0.52 8.91 6.74 -10.86 -0.07 8.84 16 29 O -0.51 -10.85 14.70 -15.81 -0.23 -11.08 16 30 H 0.05 0.68 7.74 -51.93 -0.40 0.28 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.47 6.83 -51.93 -0.35 1.11 16 34 H 0.08 1.45 6.64 -51.93 -0.34 1.11 16 35 H 0.04 0.88 8.06 -51.93 -0.42 0.46 16 36 H 0.04 0.92 5.11 -51.93 -0.27 0.66 16 37 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 38 H 0.09 1.56 8.02 -51.93 -0.42 1.15 16 39 H 0.08 1.52 7.31 -51.93 -0.38 1.14 16 40 H 0.14 2.37 7.99 -52.48 -0.42 1.95 16 41 H 0.13 1.51 8.06 -52.48 -0.42 1.08 16 42 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.16 2.58 8.06 -52.49 -0.42 2.15 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 49 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 400.92 15.07 6.04 6.04 Total: -1.00 -31.22 400.92 -9.80 -41.01 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -7.54 Total: 8.22 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: -2.64 Total: 7.33 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -0.20 Total: -53.38 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.45 Total: -23.63 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.22 -9.80 -41.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415191703.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.368 kcal (2) G-P(sol) polarization free energy of solvation -31.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds