Wall clock time and date at job start Wed Apr 1 2020 03:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47028 * 2 1 4 4 H 1.09004 * 109.47111 * 304.57394 * 3 2 1 5 5 C 1.50693 * 109.47443 * 184.57003 * 3 2 1 6 6 O 1.21278 * 120.00089 * 260.17161 * 5 3 2 7 7 N 1.34777 * 120.00374 * 80.16855 * 5 3 2 8 8 C 1.46500 * 119.99479 * 5.44939 * 7 5 3 9 9 C 1.50697 * 109.47398 * 87.87425 * 8 7 5 10 10 H 1.08000 * 119.99787 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00079 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99878 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99795 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47424 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47081 * 120.00150 * 13 11 9 16 16 H 1.48504 * 109.46859 * 239.99704 * 13 11 9 17 17 C 1.46498 * 120.00532 * 185.44721 * 7 5 3 18 18 C 1.50697 * 109.46888 * 89.99964 * 17 7 5 19 19 C 1.38672 * 120.41979 * 269.71924 * 18 17 7 20 20 C 1.38624 * 118.42378 * 179.78577 * 19 18 17 21 21 C 1.38236 * 119.15904 * 0.51725 * 20 19 18 22 22 N 1.31850 * 120.76248 * 359.72145 * 21 20 19 23 23 C 1.31888 * 121.72829 * 0.02562 * 22 21 20 24 24 N 1.46497 * 109.47224 * 64.57005 * 3 2 1 25 25 C 1.46769 * 124.35247 * 240.00303 * 24 3 2 26 26 C 1.54482 * 105.47709 * 197.01344 * 25 24 3 27 27 C 1.54624 * 101.76176 * 334.58400 * 26 25 24 28 28 C 1.34424 * 124.35073 * 59.99760 * 24 3 2 29 29 O 1.21273 * 124.94274 * 359.63173 * 28 24 3 30 30 H 1.09005 * 109.47318 * 299.99808 * 1 2 3 31 31 H 1.08999 * 109.47436 * 60.00033 * 1 2 3 32 32 H 1.08999 * 109.47264 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47521 * 239.99995 * 2 1 3 34 34 H 1.08999 * 109.47436 * 119.99967 * 2 1 3 35 35 H 1.09006 * 109.47248 * 207.87487 * 8 7 5 36 36 H 1.08997 * 109.47379 * 327.86879 * 8 7 5 37 37 H 0.97002 * 119.99637 * 180.02562 * 12 11 9 38 38 H 1.08996 * 109.47347 * 209.99979 * 17 7 5 39 39 H 1.08999 * 109.46824 * 329.99933 * 17 7 5 40 40 H 1.08004 * 120.79119 * 0.02669 * 19 18 17 41 41 H 1.08003 * 120.42505 * 180.22371 * 20 19 18 42 42 H 1.07996 * 119.61898 * 179.75302 * 21 20 19 43 43 H 1.07998 * 119.62044 * 179.97438 * 23 22 21 44 44 H 1.08998 * 110.24775 * 78.01274 * 25 24 3 45 45 H 1.08996 * 110.24383 * 316.01602 * 25 24 3 46 46 H 1.09001 * 110.96507 * 92.69973 * 26 25 24 47 47 H 1.08999 * 110.96800 * 216.46363 * 26 25 24 48 48 H 1.09003 * 110.48916 * 143.47280 * 27 26 25 49 49 H 1.09001 * 110.48616 * 265.98552 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6112 1.9795 -0.8462 5 6 3.5426 1.4441 -0.1132 6 8 4.2252 1.5965 0.8776 7 7 4.1281 1.2762 -1.3155 8 6 3.3072 1.2117 -2.5272 9 6 3.0869 2.6042 -3.0595 10 1 3.5150 3.4525 -2.5462 11 6 2.3386 2.7953 -4.2017 12 7 1.8168 1.7623 -4.8264 13 14 2.0649 4.5215 -4.8609 14 1 2.7507 5.5019 -3.9813 15 1 2.6162 4.6193 -6.2363 16 1 0.6095 4.8156 -4.8890 17 6 5.5852 1.1582 -1.4107 18 6 5.9801 -0.2917 -1.2974 19 6 6.2568 -0.8493 -0.0582 20 6 6.6117 -2.1881 -0.0014 21 6 6.6882 -2.9150 -1.1748 22 7 6.4229 -2.3503 -2.3364 23 6 6.0773 -1.0808 -2.4276 24 7 1.6435 2.1006 1.2474 25 6 0.7980 3.2982 1.3195 26 6 1.0094 3.8670 2.7402 27 6 1.4280 2.6033 3.5267 28 6 2.0073 1.6853 2.4729 29 8 2.6998 0.7161 2.7008 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8177 0.6114 -3.2804 36 1 2.3454 0.7566 -2.2908 37 1 1.2907 1.8968 -5.6302 38 1 5.9197 1.5519 -2.3704 39 1 6.0491 1.7253 -0.6037 40 1 6.1933 -0.2556 0.8418 41 1 6.8305 -2.6563 0.9470 42 1 6.9679 -3.9575 -1.1396 43 1 5.8679 -0.6529 -3.3969 44 1 -0.2483 3.0306 1.1722 45 1 1.1108 4.0263 0.5712 46 1 1.8048 4.6123 2.7475 47 1 0.0829 4.2835 3.1354 48 1 2.1826 2.8510 4.2733 49 1 0.5604 2.1439 4.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415191703.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:33 Heat of formation + Delta-G solvation = -48.701536 kcal Electronic energy + Delta-G solvation = -32147.931348 eV Core-core repulsion = 28074.284190 eV Total energy + Delta-G solvation = -4073.647159 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.90378 -41.16707 -40.04587 -37.29442 -36.88897 -35.88084 -34.78935 -33.53973 -32.59434 -31.90460 -29.40462 -28.77877 -28.35115 -26.75732 -25.03237 -24.38851 -23.39791 -23.06667 -22.66910 -21.01873 -19.46975 -18.67662 -18.25675 -17.95777 -17.84105 -17.40171 -17.11100 -16.73478 -16.50009 -16.34417 -15.76367 -15.48663 -15.26649 -14.97518 -14.58257 -14.53756 -14.41726 -14.25584 -14.18597 -14.00871 -13.79126 -13.60867 -13.40513 -13.37767 -13.21179 -12.91512 -12.74724 -12.72784 -12.47144 -12.39951 -12.16046 -12.06546 -11.98818 -11.78975 -11.67135 -10.98380 -10.77447 -10.58378 -10.52199 -10.48254 -10.04601 -9.54010 -9.49618 -8.19329 -6.34781 0.07328 0.27229 1.41531 1.45907 1.54345 1.59737 1.79622 2.03103 2.35781 2.49671 2.90456 3.10874 3.45336 3.50232 3.64783 3.70492 3.82488 3.89322 3.92538 4.02100 4.02836 4.05860 4.10789 4.26928 4.37345 4.41328 4.49823 4.61805 4.67481 4.68406 4.70140 4.78593 4.80812 4.84937 4.89929 4.97192 5.03779 5.09746 5.14181 5.17401 5.24921 5.29752 5.32103 5.55075 5.67892 5.72161 5.80583 6.04866 6.34646 6.51255 6.79418 6.95682 7.23627 7.37050 7.43041 8.86119 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.006747 B = 0.006022 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4148.923257 B = 4648.713399 C = 7596.287163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.120 4.120 3 C 0.150 3.850 4 H 0.115 0.885 5 C 0.503 3.497 6 O -0.566 6.566 7 N -0.593 5.593 8 C 0.251 3.749 9 C -0.547 4.547 10 H 0.052 0.948 11 C 0.029 3.971 12 N -0.914 5.914 13 Si 0.954 3.046 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.274 1.274 17 C 0.163 3.837 18 C -0.155 4.155 19 C -0.066 4.066 20 C -0.170 4.170 21 C 0.093 3.907 22 N -0.506 5.506 23 C 0.104 3.896 24 N -0.608 5.608 25 C 0.091 3.909 26 C -0.115 4.115 27 C -0.145 4.145 28 C 0.504 3.496 29 O -0.565 6.565 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.021 0.979 36 H 0.032 0.968 37 H 0.268 0.732 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.123 0.877 41 H 0.162 0.838 42 H 0.189 0.811 43 H 0.154 0.846 44 H 0.095 0.905 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.128 0.872 48 H 0.100 0.900 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.423 0.276 11.632 11.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.159 4.159 3 C 0.043 3.957 4 H 0.133 0.867 5 C 0.291 3.709 6 O -0.446 6.446 7 N -0.324 5.324 8 C 0.131 3.869 9 C -0.585 4.585 10 H 0.070 0.930 11 C -0.173 4.173 12 N -0.553 5.553 13 Si 0.779 3.221 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.200 1.200 17 C 0.039 3.961 18 C -0.158 4.158 19 C -0.093 4.093 20 C -0.190 4.190 21 C -0.064 4.064 22 N -0.215 5.215 23 C -0.053 4.053 24 N -0.342 5.342 25 C -0.030 4.030 26 C -0.152 4.152 27 C -0.185 4.185 28 C 0.294 3.706 29 O -0.443 6.443 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.039 0.961 36 H 0.050 0.950 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.141 0.859 41 H 0.179 0.821 42 H 0.206 0.794 43 H 0.171 0.829 44 H 0.114 0.886 45 H 0.091 0.909 46 H 0.096 0.904 47 H 0.146 0.854 48 H 0.119 0.881 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.753 -0.708 11.261 11.419 hybrid contribution 0.105 1.247 -0.251 1.276 sum -1.648 0.539 11.010 11.146 Atomic orbital electron populations 1.21608 0.92427 1.02587 1.02307 1.21657 0.98833 0.93710 1.01668 1.20765 0.90908 0.96073 0.87999 0.86742 1.21134 0.91491 0.75679 0.82620 1.90607 1.65824 1.51024 1.37146 1.48191 1.06533 1.70176 1.07524 1.19187 0.90143 0.96503 0.81064 1.21625 1.33264 0.93041 1.10576 0.92974 1.25578 0.94902 1.00380 0.96391 1.70020 1.34552 1.31396 1.19319 0.85569 0.78154 0.80223 0.78106 1.19589 1.20808 1.19956 1.20119 0.81221 0.91388 1.03344 1.21273 1.01448 0.98329 0.94757 1.21673 0.94328 0.96091 0.97183 1.22435 1.01037 0.94097 1.01407 1.23331 0.94627 1.01408 0.87073 1.67726 1.12167 1.11891 1.29737 1.22736 0.94578 0.89467 0.98480 1.48193 1.51127 1.30243 1.04644 1.22436 0.95297 0.85566 0.99715 1.22611 1.04627 0.95939 0.92063 1.22338 1.03439 0.95924 0.96787 1.21654 0.78653 0.85094 0.85205 1.90636 1.38912 1.30635 1.84151 0.91819 0.92158 0.91430 0.92049 0.92548 0.96053 0.95006 0.92258 0.88879 0.90468 0.85934 0.82077 0.79445 0.82918 0.88640 0.90872 0.90399 0.85403 0.88147 0.85700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 9.80 71.98 0.71 -3.05 16 2 C -0.12 -4.32 5.04 30.59 0.15 -4.17 16 3 C 0.15 5.66 1.82 44.24 0.08 5.74 16 4 H 0.11 4.56 6.57 -2.38 -0.02 4.55 16 5 C 0.50 21.80 6.81 87.65 0.60 22.40 16 6 O -0.57 -26.82 13.58 17.41 0.24 -26.59 16 7 N -0.59 -25.30 2.44 -830.53 -2.03 -27.33 16 8 C 0.25 11.69 4.76 85.63 0.41 12.10 16 9 C -0.55 -27.10 8.95 25.60 0.23 -26.87 16 10 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 11 C 0.03 1.43 5.46 84.66 0.46 1.89 16 12 N -0.91 -48.07 13.29 21.45 0.28 -47.78 16 13 Si 0.95 39.72 29.54 68.60 2.03 41.74 16 14 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 15 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 16 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 17 C 0.16 6.25 5.59 85.63 0.48 6.73 16 18 C -0.15 -5.56 5.48 -19.77 -0.11 -5.67 16 19 C -0.07 -2.24 9.86 22.47 0.22 -2.02 16 20 C -0.17 -4.70 10.11 22.36 0.23 -4.47 16 21 C 0.09 2.53 11.18 84.69 0.95 3.48 16 22 N -0.51 -16.95 10.36 -195.84 -2.03 -18.98 16 23 C 0.10 3.67 10.86 84.67 0.92 4.59 16 24 N -0.61 -19.55 2.19 -798.20 -1.75 -21.30 16 25 C 0.09 2.03 7.30 86.83 0.63 2.67 16 26 C -0.11 -1.84 7.18 31.65 0.23 -1.62 16 27 C -0.14 -3.04 6.86 30.59 0.21 -2.83 16 28 C 0.50 17.09 6.74 87.90 0.59 17.69 16 29 O -0.57 -24.58 14.70 17.43 0.26 -24.32 16 30 H 0.06 1.63 7.74 -2.38 -0.02 1.61 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.06 2.38 6.83 -2.39 -0.02 2.37 16 34 H 0.06 2.25 6.64 -2.39 -0.02 2.23 16 35 H 0.02 1.06 8.06 -2.38 -0.02 1.04 16 36 H 0.03 1.54 5.11 -2.39 -0.01 1.52 16 37 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 38 H 0.09 3.43 8.02 -2.39 -0.02 3.41 16 39 H 0.08 3.01 7.31 -2.39 -0.02 2.99 16 40 H 0.12 4.47 7.99 -2.91 -0.02 4.45 16 41 H 0.16 3.36 8.06 -2.91 -0.02 3.33 16 42 H 0.19 3.58 8.06 -2.91 -0.02 3.56 16 43 H 0.15 5.33 8.06 -2.91 -0.02 5.31 16 44 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.13 1.07 8.14 -2.39 -0.02 1.06 16 48 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 49 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -70.02 400.92 4.92 -65.10 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: 0.94 Total: 32.86 kcal Atomic # 6 Polarization: 19.62 SS G_CDS: 6.98 Total: 26.60 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -5.52 Total: -115.39 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: 0.49 Total: -50.91 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.74 kcal Total: -70.02 4.92 -65.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415191703.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.397 kcal (2) G-P(sol) polarization free energy of solvation -70.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds