Wall clock time and date at job start Wed Apr 1 2020 03:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47583 * 2 1 4 4 N 1.46499 * 109.46797 * 120.00155 * 2 1 3 5 5 C 1.46493 * 120.00225 * 294.68391 * 4 2 1 6 6 C 1.50706 * 109.47147 * 270.00315 * 5 4 2 7 7 H 1.08000 * 120.00099 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99764 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99971 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99919 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46953 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46849 * 120.00281 * 10 8 6 13 13 H 1.48502 * 109.47492 * 240.00260 * 10 8 6 14 14 C 1.34783 * 119.99875 * 114.68985 * 4 2 1 15 15 O 1.21599 * 119.99891 * 184.77779 * 14 4 2 16 16 C 1.47522 * 120.00264 * 4.77272 * 14 4 2 17 17 C 1.39778 * 120.06644 * 312.75032 * 16 14 4 18 18 C 1.37719 * 120.13927 * 180.53548 * 17 16 14 19 19 C 1.39049 * 120.12098 * 359.52525 * 18 17 16 20 20 C 1.39772 * 119.94435 * 359.84911 * 19 18 17 21 21 C 1.38036 * 120.17191 * 0.69641 * 20 19 18 22 22 N 1.40370 * 119.47817 * 181.90966 * 20 19 18 23 23 C 1.34931 * 118.42094 * 48.65279 * 22 20 19 24 24 O 1.21292 * 120.27547 * 183.37891 * 23 22 20 25 25 C 1.50575 * 119.45022 * 3.40795 * 23 22 20 26 26 C 1.52592 * 110.32320 * 283.92036 * 25 23 22 27 27 N 1.39013 * 120.24561 * 179.04080 * 19 18 17 28 28 C 1.46902 * 111.00150 * 227.80765 * 27 19 18 29 29 H 1.08995 * 109.47057 * 300.00361 * 1 2 3 30 30 H 1.09001 * 109.46839 * 59.99771 * 1 2 3 31 31 H 1.08993 * 109.47517 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47352 * 240.00171 * 2 1 3 33 33 H 1.09000 * 109.47351 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47220 * 299.99995 * 3 2 1 35 35 H 1.09004 * 109.46637 * 59.99733 * 3 2 1 36 36 H 1.09007 * 109.47311 * 30.00050 * 5 4 2 37 37 H 1.08997 * 109.47473 * 150.00338 * 5 4 2 38 38 H 0.97007 * 119.99429 * 179.97438 * 9 8 6 39 39 H 1.07999 * 119.92880 * 0.25608 * 17 16 14 40 40 H 1.07995 * 119.93875 * 179.78209 * 18 17 16 41 41 H 1.08002 * 120.12213 * 179.40911 * 21 20 19 42 42 H 0.96997 * 120.78807 * 228.67508 * 22 20 19 43 43 H 1.08997 * 109.32767 * 163.65680 * 25 23 22 44 44 H 1.09005 * 109.32971 * 44.18097 * 25 23 22 45 45 H 1.09001 * 109.29959 * 283.54949 * 26 25 23 46 46 H 1.09006 * 109.30102 * 164.17810 * 26 25 23 47 47 H 1.08999 * 109.46935 * 64.14404 * 28 27 19 48 48 H 1.08999 * 109.46659 * 184.14336 * 28 27 19 49 49 H 1.09001 * 109.46877 * 304.14305 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 1.7628 -0.1260 2.5236 6 6 2.8924 0.7967 2.9028 7 1 3.7182 0.9471 2.2232 8 6 2.8716 1.4489 4.1174 9 7 1.8663 1.2653 4.9452 10 14 4.2721 2.5920 4.5879 11 1 5.2733 2.6254 3.4916 12 1 3.7399 3.9599 4.8135 13 1 4.9161 2.0999 5.8322 14 6 2.7025 -1.8456 1.0754 15 8 3.0323 -2.4636 2.0693 16 6 3.0513 -2.3598 -0.2626 17 6 2.0824 -2.4074 -1.2690 18 6 2.4036 -2.8975 -2.5154 19 6 3.6956 -3.3378 -2.7804 20 6 4.6711 -3.2801 -1.7811 21 6 4.3518 -2.8002 -0.5268 22 7 5.9821 -3.6895 -2.0710 23 6 6.5719 -3.2123 -3.1869 24 8 7.6802 -3.5909 -3.5023 25 6 5.8430 -2.2056 -4.0369 26 6 4.7561 -2.8931 -4.8580 27 7 4.0175 -3.8514 -4.0314 28 6 4.7534 -5.1168 -3.9075 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 0.8271 0.4330 2.5068 37 1 1.6914 -0.9321 3.2538 38 1 1.8519 1.7239 5.7999 39 1 1.0788 -2.0632 -1.0675 40 1 1.6516 -2.9360 -3.2895 41 1 5.1038 -2.7649 0.2476 42 1 6.4527 -4.3011 -1.4834 43 1 6.5510 -1.7211 -4.7092 44 1 5.3873 -1.4527 -3.3936 45 1 5.2153 -3.4186 -5.6954 46 1 4.0659 -2.1422 -5.2428 47 1 4.1117 -5.8664 -3.4446 48 1 5.0566 -5.4590 -4.8970 49 1 5.6378 -4.9636 -3.2891 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531295562.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:11 Heat of formation + Delta-G solvation = 0.115409 kcal Electronic energy + Delta-G solvation = -31666.391047 eV Core-core repulsion = 27594.860750 eV Total energy + Delta-G solvation = -4071.530297 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.08326 -39.86031 -38.52850 -36.74253 -36.09865 -35.19974 -32.89738 -31.86397 -30.95497 -30.52482 -29.79684 -27.42179 -26.75734 -26.08689 -24.98051 -23.34765 -22.64781 -21.92996 -21.08769 -20.60810 -18.88766 -17.85795 -17.46899 -16.97436 -16.56529 -16.48849 -16.12335 -15.69637 -15.31676 -14.91320 -14.64684 -14.47556 -13.96880 -13.80328 -13.69873 -13.62025 -13.36799 -13.26402 -13.00498 -12.69870 -12.60519 -12.43750 -12.19917 -12.03850 -11.73000 -11.69186 -11.64075 -11.49199 -11.24159 -10.98533 -10.93038 -10.73572 -10.56096 -10.35327 -10.23678 -10.04068 -9.59281 -9.26174 -9.11511 -8.58065 -8.46576 -8.40057 -7.73836 -6.07963 -4.11605 0.73341 1.07318 2.10378 2.73440 3.09043 3.26517 3.34817 3.36664 3.38121 3.57693 3.88088 4.06440 4.40926 4.43433 4.56134 4.62941 4.77618 4.95523 5.00260 5.04236 5.18291 5.23514 5.24355 5.26419 5.28005 5.35847 5.41800 5.49410 5.62204 5.63681 5.69470 5.83724 5.95549 6.00859 6.10251 6.19827 6.23638 6.33224 6.34059 6.44348 6.47623 6.56609 6.70157 6.93153 7.03368 7.06665 7.41260 7.48286 7.66723 7.88605 8.19452 8.32487 8.82396 8.98304 9.52788 11.00195 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014629 B = 0.003232 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.581943 B = 8662.092129 C = 9415.201772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.116 3.884 3 C -0.154 4.154 4 N -0.580 5.580 5 C 0.245 3.755 6 C -0.521 4.521 7 H 0.059 0.941 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.894 3.106 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.545 3.455 15 O -0.534 6.534 16 C -0.092 4.092 17 C -0.094 4.094 18 C -0.084 4.084 19 C 0.088 3.912 20 C 0.094 3.906 21 C -0.074 4.074 22 N -0.673 5.673 23 C 0.529 3.471 24 O -0.529 6.529 25 C -0.181 4.181 26 C 0.070 3.930 27 N -0.503 5.503 28 C -0.011 4.011 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.036 0.964 37 H 0.044 0.956 38 H 0.262 0.738 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.413 0.587 43 H 0.109 0.891 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.020 -6.813 -21.005 22.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.012 3.988 3 C -0.212 4.212 4 N -0.311 5.311 5 C 0.127 3.873 6 C -0.560 4.560 7 H 0.077 0.923 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.722 3.278 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.331 3.669 15 O -0.412 6.412 16 C -0.096 4.096 17 C -0.113 4.113 18 C -0.103 4.103 19 C -0.009 4.009 20 C -0.001 4.001 21 C -0.095 4.095 22 N -0.323 5.323 23 C 0.318 3.682 24 O -0.404 6.404 25 C -0.223 4.223 26 C -0.057 4.057 27 N -0.222 5.222 28 C -0.158 4.158 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.155 0.845 42 H 0.253 0.747 43 H 0.128 0.872 44 H 0.116 0.884 45 H 0.106 0.894 46 H 0.115 0.885 47 H 0.092 0.908 48 H 0.090 0.910 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.219 -7.241 -20.858 22.080 hybrid contribution 1.660 0.640 1.196 2.144 sum 1.879 -6.601 -19.661 20.825 Atomic orbital electron populations 1.22201 0.95573 1.01740 1.02725 1.21442 0.94011 0.94645 0.88712 1.22099 1.01552 0.95377 1.02186 1.48271 1.52448 1.21179 1.09196 1.19298 0.96709 0.94217 0.77111 1.21456 1.06514 1.25679 1.02343 0.92307 1.24915 0.96024 0.97008 0.96113 1.69940 1.30678 1.43104 1.09549 0.86500 0.82321 0.80372 0.78584 1.19849 1.20978 1.20929 1.18045 0.79429 0.81813 0.87607 1.90794 1.54069 1.57937 1.38415 1.20190 0.93944 1.00295 0.95159 1.21486 0.99976 0.97910 0.91972 1.20791 0.94431 0.98199 0.96902 1.18647 0.92850 0.99953 0.89464 1.18176 0.84122 1.02251 0.95558 1.20977 0.96558 0.96095 0.95877 1.44003 1.13899 1.48055 1.26390 1.20686 0.85692 0.81034 0.80746 1.90783 1.19800 1.59319 1.70481 1.22413 1.00752 0.98726 1.00388 1.22145 0.93105 0.95256 0.95149 1.58892 1.45803 1.04755 1.12724 1.23091 0.99243 0.90420 1.03074 0.91255 0.91972 0.92840 0.89323 0.92608 0.93239 0.90196 0.94581 0.93793 0.92787 0.84066 0.84182 0.84549 0.74692 0.87238 0.88394 0.89420 0.88539 0.90812 0.90970 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 8.83 37.15 0.33 -1.81 16 2 C 0.12 1.76 2.43 -67.93 -0.17 1.59 16 3 C -0.15 -2.43 8.35 37.16 0.31 -2.12 16 4 N -0.58 -11.54 2.38 -168.69 -0.40 -11.94 16 5 C 0.25 6.07 4.49 -5.19 -0.02 6.04 16 6 C -0.52 -13.99 7.85 -34.44 -0.27 -14.26 16 7 H 0.06 1.59 7.53 -52.49 -0.40 1.19 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -25.76 13.29 55.43 0.74 -25.03 16 10 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 14 C 0.55 10.97 7.24 -12.47 -0.09 10.88 16 15 O -0.53 -13.15 16.56 5.28 0.09 -13.06 16 16 C -0.09 -1.38 5.15 -104.94 -0.54 -1.92 16 17 C -0.09 -1.09 7.28 -39.20 -0.29 -1.38 16 18 C -0.08 -0.81 9.95 -39.47 -0.39 -1.21 16 19 C 0.09 0.90 4.35 -83.73 -0.36 0.54 16 20 C 0.09 1.08 5.11 -83.45 -0.43 0.65 16 21 C -0.07 -1.02 9.63 -39.06 -0.38 -1.40 16 22 N -0.67 -7.24 3.50 -9.74 -0.03 -7.27 16 23 C 0.53 6.06 5.20 -10.98 -0.06 6.01 16 24 O -0.53 -7.70 17.95 5.55 0.10 -7.60 16 25 C -0.18 -1.57 5.41 -28.15 -0.15 -1.73 16 26 C 0.07 0.51 6.03 -4.23 -0.03 0.49 16 27 N -0.50 -4.53 4.84 -179.39 -0.87 -5.40 16 28 C -0.01 -0.10 8.81 60.07 0.53 0.43 16 29 H 0.07 1.05 6.88 -51.93 -0.36 0.69 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.65 7.32 -51.93 -0.38 0.27 16 32 H 0.09 1.14 4.07 -51.93 -0.21 0.93 16 33 H 0.05 0.94 7.97 -51.93 -0.41 0.53 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16 36 H 0.04 0.90 6.70 -51.92 -0.35 0.55 16 37 H 0.04 1.25 7.36 -51.93 -0.38 0.87 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.14 1.50 5.45 -52.49 -0.29 1.21 16 40 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 41 H 0.14 2.00 8.06 -52.49 -0.42 1.58 16 42 H 0.41 4.06 8.95 -40.82 -0.37 3.70 16 43 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.10 0.88 7.32 -51.93 -0.38 0.49 16 45 H 0.09 0.56 7.70 -51.93 -0.40 0.17 16 46 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.07 0.58 7.81 -51.93 -0.41 0.17 16 49 H 0.06 0.63 3.60 -52.45 -0.19 0.44 16 LS Contribution 381.68 15.07 5.75 5.75 Total: -1.00 -33.25 381.68 -8.72 -41.97 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.97 Total: 3.86 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -2.10 Total: 2.40 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: -0.57 Total: -49.64 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: 0.19 Total: -20.66 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.25 -8.72 -41.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531295562.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.084 kcal (2) G-P(sol) polarization free energy of solvation -33.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds