Wall clock time and date at job start Wed Apr 1 2020 03:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47583 * 2 1 4 4 N 1.46499 * 109.46797 * 120.00155 * 2 1 3 5 5 C 1.46493 * 120.00225 * 294.68391 * 4 2 1 6 6 C 1.50706 * 109.47147 * 270.00315 * 5 4 2 7 7 H 1.08000 * 120.00099 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99764 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99971 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99919 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46953 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46849 * 120.00281 * 10 8 6 13 13 H 1.48502 * 109.47492 * 240.00260 * 10 8 6 14 14 C 1.34783 * 119.99875 * 114.68985 * 4 2 1 15 15 O 1.21599 * 119.99891 * 184.77779 * 14 4 2 16 16 C 1.47522 * 120.00264 * 4.77272 * 14 4 2 17 17 C 1.39778 * 120.06644 * 312.75032 * 16 14 4 18 18 C 1.37719 * 120.13927 * 180.53548 * 17 16 14 19 19 C 1.39049 * 120.12098 * 359.52525 * 18 17 16 20 20 C 1.39772 * 119.94435 * 359.84911 * 19 18 17 21 21 C 1.38036 * 120.17191 * 0.69641 * 20 19 18 22 22 N 1.40370 * 119.47817 * 181.90966 * 20 19 18 23 23 C 1.34931 * 118.42094 * 48.65279 * 22 20 19 24 24 O 1.21292 * 120.27547 * 183.37891 * 23 22 20 25 25 C 1.50575 * 119.45022 * 3.40795 * 23 22 20 26 26 C 1.52592 * 110.32320 * 283.92036 * 25 23 22 27 27 N 1.39013 * 120.24561 * 179.04080 * 19 18 17 28 28 C 1.46902 * 111.00150 * 227.80765 * 27 19 18 29 29 H 1.08995 * 109.47057 * 300.00361 * 1 2 3 30 30 H 1.09001 * 109.46839 * 59.99771 * 1 2 3 31 31 H 1.08993 * 109.47517 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47352 * 240.00171 * 2 1 3 33 33 H 1.09000 * 109.47351 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47220 * 299.99995 * 3 2 1 35 35 H 1.09004 * 109.46637 * 59.99733 * 3 2 1 36 36 H 1.09007 * 109.47311 * 30.00050 * 5 4 2 37 37 H 1.08997 * 109.47473 * 150.00338 * 5 4 2 38 38 H 0.97007 * 119.99429 * 179.97438 * 9 8 6 39 39 H 1.07999 * 119.92880 * 0.25608 * 17 16 14 40 40 H 1.07995 * 119.93875 * 179.78209 * 18 17 16 41 41 H 1.08002 * 120.12213 * 179.40911 * 21 20 19 42 42 H 0.96997 * 120.78807 * 228.67508 * 22 20 19 43 43 H 1.08997 * 109.32767 * 163.65680 * 25 23 22 44 44 H 1.09005 * 109.32971 * 44.18097 * 25 23 22 45 45 H 1.09001 * 109.29959 * 283.54949 * 26 25 23 46 46 H 1.09006 * 109.30102 * 164.17810 * 26 25 23 47 47 H 1.08999 * 109.46935 * 64.14404 * 28 27 19 48 48 H 1.08999 * 109.46659 * 184.14336 * 28 27 19 49 49 H 1.09001 * 109.46877 * 304.14305 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 1.7628 -0.1260 2.5236 6 6 2.8924 0.7967 2.9028 7 1 3.7182 0.9471 2.2232 8 6 2.8716 1.4489 4.1174 9 7 1.8663 1.2653 4.9452 10 14 4.2721 2.5920 4.5879 11 1 5.2733 2.6254 3.4916 12 1 3.7399 3.9599 4.8135 13 1 4.9161 2.0999 5.8322 14 6 2.7025 -1.8456 1.0754 15 8 3.0323 -2.4636 2.0693 16 6 3.0513 -2.3598 -0.2626 17 6 2.0824 -2.4074 -1.2690 18 6 2.4036 -2.8975 -2.5154 19 6 3.6956 -3.3378 -2.7804 20 6 4.6711 -3.2801 -1.7811 21 6 4.3518 -2.8002 -0.5268 22 7 5.9821 -3.6895 -2.0710 23 6 6.5719 -3.2123 -3.1869 24 8 7.6802 -3.5909 -3.5023 25 6 5.8430 -2.2056 -4.0369 26 6 4.7561 -2.8931 -4.8580 27 7 4.0175 -3.8514 -4.0314 28 6 4.7534 -5.1168 -3.9075 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 0.8271 0.4330 2.5068 37 1 1.6914 -0.9321 3.2538 38 1 1.8519 1.7239 5.7999 39 1 1.0788 -2.0632 -1.0675 40 1 1.6516 -2.9360 -3.2895 41 1 5.1038 -2.7649 0.2476 42 1 6.4527 -4.3011 -1.4834 43 1 6.5510 -1.7211 -4.7092 44 1 5.3873 -1.4527 -3.3936 45 1 5.2153 -3.4186 -5.6954 46 1 4.0659 -2.1422 -5.2428 47 1 4.1117 -5.8664 -3.4446 48 1 5.0566 -5.4590 -4.8970 49 1 5.6378 -4.9636 -3.2891 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531295562.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:10 Heat of formation + Delta-G solvation = -22.823661 kcal Electronic energy + Delta-G solvation = -31667.385760 eV Core-core repulsion = 27594.860750 eV Total energy + Delta-G solvation = -4072.525010 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.94696 -41.22533 -39.60254 -37.69950 -37.63060 -36.14028 -34.91808 -32.66001 -32.46802 -31.50776 -30.86559 -29.14212 -27.94174 -26.88367 -26.06048 -24.88338 -23.77673 -23.17716 -22.02471 -21.60431 -20.13153 -19.02462 -18.61984 -18.43390 -17.85322 -17.49388 -17.32751 -16.87002 -16.41910 -16.24497 -16.14494 -15.51266 -15.29803 -15.08106 -14.86404 -14.62783 -14.36858 -14.22394 -14.17114 -13.90806 -13.68010 -13.60196 -13.41562 -13.27710 -13.15361 -12.84857 -12.75007 -12.72079 -12.53928 -12.48330 -12.27998 -12.22121 -12.09288 -11.77494 -11.53629 -11.36580 -11.13097 -10.76063 -10.62492 -10.12486 -9.53619 -9.38628 -9.30200 -8.20996 -6.32633 -0.25891 0.11979 1.21815 1.34248 1.36745 1.47346 1.73210 1.87827 2.23408 2.40910 2.59303 2.64369 3.09250 3.25628 3.53383 3.65956 3.86242 3.94960 3.98873 4.10112 4.19661 4.29233 4.32273 4.37180 4.43506 4.47542 4.55517 4.68987 4.79655 4.80631 4.88710 4.90758 4.95681 4.96730 5.06195 5.07871 5.12950 5.13889 5.24572 5.27463 5.44579 5.48209 5.56607 5.58802 5.64920 5.75137 5.85632 5.86459 6.09208 6.23919 6.70737 6.77882 6.78539 7.26162 7.42022 8.86557 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014629 B = 0.003232 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.581943 B = 8662.092129 C = 9415.201772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.109 3.891 3 C -0.150 4.150 4 N -0.583 5.583 5 C 0.264 3.736 6 C -0.527 4.527 7 H 0.052 0.948 8 C 0.009 3.991 9 N -0.928 5.928 10 Si 0.959 3.041 11 H -0.269 1.269 12 H -0.270 1.270 13 H -0.285 1.285 14 C 0.538 3.462 15 O -0.597 6.597 16 C -0.112 4.112 17 C -0.084 4.084 18 C -0.063 4.063 19 C 0.101 3.899 20 C 0.100 3.900 21 C -0.086 4.086 22 N -0.671 5.671 23 C 0.527 3.473 24 O -0.565 6.565 25 C -0.178 4.178 26 C 0.070 3.930 27 N -0.498 5.498 28 C -0.013 4.013 29 H 0.039 0.961 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.123 0.877 33 H 0.037 0.963 34 H 0.093 0.907 35 H 0.043 0.957 36 H 0.030 0.970 37 H -0.006 1.006 38 H 0.265 0.735 39 H 0.157 0.843 40 H 0.179 0.821 41 H 0.113 0.887 42 H 0.413 0.587 43 H 0.123 0.877 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.124 0.876 47 H 0.072 0.928 48 H 0.086 0.914 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.770 -6.215 -25.407 26.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.007 3.993 3 C -0.208 4.208 4 N -0.312 5.312 5 C 0.143 3.857 6 C -0.565 4.565 7 H 0.071 0.929 8 C -0.189 4.189 9 N -0.568 5.568 10 Si 0.784 3.216 11 H -0.193 1.193 12 H -0.195 1.195 13 H -0.211 1.211 14 C 0.327 3.673 15 O -0.479 6.479 16 C -0.116 4.116 17 C -0.103 4.103 18 C -0.082 4.082 19 C 0.004 3.996 20 C 0.004 3.996 21 C -0.107 4.107 22 N -0.321 5.321 23 C 0.318 3.682 24 O -0.443 6.443 25 C -0.220 4.220 26 C -0.056 4.056 27 N -0.216 5.216 28 C -0.161 4.161 29 H 0.058 0.942 30 H 0.122 0.878 31 H 0.083 0.917 32 H 0.140 0.860 33 H 0.056 0.944 34 H 0.111 0.889 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.013 0.987 38 H 0.074 0.926 39 H 0.175 0.825 40 H 0.197 0.803 41 H 0.131 0.869 42 H 0.253 0.747 43 H 0.141 0.859 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.142 0.858 47 H 0.091 0.909 48 H 0.104 0.896 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.557 -6.621 -25.311 26.169 hybrid contribution 1.910 0.371 2.486 3.157 sum 1.354 -6.250 -22.825 23.704 Atomic orbital electron populations 1.22184 0.93526 1.02704 1.03316 1.21877 0.95620 0.94134 0.87634 1.22053 1.00375 0.95825 1.02526 1.48281 1.52524 1.21462 1.08978 1.18699 0.95960 0.92047 0.79007 1.21665 1.06702 1.25756 1.02422 0.92941 1.25748 0.98430 0.98633 0.96129 1.70053 1.32475 1.44249 1.10002 0.85500 0.79308 0.78830 0.77987 1.19332 1.19467 1.21094 1.18874 0.78082 0.81178 0.89194 1.90742 1.56304 1.59730 1.41144 1.19735 0.95486 1.03121 0.93287 1.21584 0.99569 0.97500 0.91632 1.21092 0.94624 0.95921 0.96527 1.18872 0.92725 0.98372 0.89628 1.18119 0.84645 1.01907 0.94922 1.20804 0.95930 0.97381 0.96602 1.44053 1.13838 1.47789 1.26381 1.21255 0.85317 0.80931 0.80687 1.90767 1.21422 1.60749 1.71353 1.22496 1.01303 0.97886 1.00293 1.22340 0.93022 0.95571 0.94668 1.59029 1.46033 1.04957 1.11620 1.23112 0.98672 0.90593 1.03685 0.94174 0.87785 0.91750 0.85995 0.94393 0.88862 0.93783 0.95171 0.98745 0.92569 0.82515 0.80345 0.86866 0.74683 0.85880 0.88337 0.88052 0.85798 0.90872 0.89573 0.93339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 8.83 71.98 0.64 -3.17 16 2 C 0.11 3.16 2.43 44.99 0.11 3.27 16 3 C -0.15 -4.56 8.35 71.98 0.60 -3.96 16 4 N -0.58 -24.06 2.38 -805.88 -1.92 -25.98 16 5 C 0.26 13.90 4.49 85.64 0.38 14.29 16 6 C -0.53 -29.66 7.85 25.60 0.20 -29.46 16 7 H 0.05 2.95 7.53 -2.91 -0.02 2.93 16 8 C 0.01 0.53 5.46 84.66 0.46 1.00 16 9 N -0.93 -55.61 13.29 21.45 0.28 -55.33 16 10 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 14 C 0.54 22.71 7.24 86.69 0.63 23.34 16 15 O -0.60 -31.75 16.56 -4.03 -0.07 -31.82 16 16 C -0.11 -3.36 5.15 -20.07 -0.10 -3.46 16 17 C -0.08 -1.68 7.28 22.52 0.16 -1.51 16 18 C -0.06 -0.91 9.95 22.34 0.22 -0.69 16 19 C 0.10 1.71 4.35 38.57 0.17 1.88 16 20 C 0.10 2.14 5.11 38.10 0.19 2.34 16 21 C -0.09 -2.41 9.63 22.61 0.22 -2.19 16 22 N -0.67 -14.03 3.50 -303.02 -1.06 -15.09 16 23 C 0.53 11.35 5.20 87.59 0.46 11.80 16 24 O -0.56 -16.11 17.95 -3.07 -0.06 -16.16 16 25 C -0.18 -2.54 5.41 29.67 0.16 -2.38 16 26 C 0.07 0.70 6.03 86.24 0.52 1.22 16 27 N -0.50 -6.82 4.84 -721.46 -3.49 -10.31 16 28 C -0.01 -0.20 8.81 127.69 1.12 0.93 16 29 H 0.04 1.20 6.88 -2.39 -0.02 1.18 16 30 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.06 1.40 7.32 -2.39 -0.02 1.38 16 32 H 0.12 2.74 4.07 -2.38 -0.01 2.73 16 33 H 0.04 1.26 7.97 -2.39 -0.02 1.24 16 34 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.04 1.65 6.95 -2.38 -0.02 1.63 16 36 H 0.03 1.61 6.70 -2.38 -0.02 1.59 16 37 H -0.01 -0.35 7.36 -2.39 -0.02 -0.36 16 38 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16 39 H 0.16 2.68 5.45 -2.91 -0.02 2.67 16 40 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 41 H 0.11 3.63 8.06 -2.91 -0.02 3.61 16 42 H 0.41 8.34 8.95 -92.71 -0.83 7.51 16 43 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.10 1.43 7.32 -2.38 -0.02 1.41 16 45 H 0.10 0.82 7.70 -2.39 -0.02 0.80 16 46 H 0.12 0.68 8.14 -2.38 -0.02 0.66 16 47 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 48 H 0.09 1.09 7.81 -2.39 -0.02 1.07 16 49 H 0.05 0.90 3.60 -3.43 -0.01 0.89 16 Total: -1.00 -79.37 381.68 2.02 -77.35 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.16 Total: 17.18 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 6.14 Total: 13.24 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -6.19 Total: -106.70 kcal Atomic # 8 Polarization: -47.86 SS G_CDS: -0.12 Total: -47.98 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -79.37 2.02 -77.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531295562.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.525 kcal (2) G-P(sol) polarization free energy of solvation -79.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds