Wall clock time and date at job start Wed Apr 1 2020 03:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47495 * 2 1 4 4 N 1.46901 * 109.47200 * 180.02562 * 3 2 1 5 5 C 1.48567 * 110.99731 * 290.12571 * 4 3 2 6 6 C 1.54379 * 104.59206 * 200.96444 * 5 4 3 7 7 C 1.54257 * 105.06314 * 23.84854 * 6 5 4 8 8 H 1.08999 * 110.32317 * 241.00642 * 7 6 5 9 9 N 1.46503 * 110.32091 * 118.90006 * 7 6 5 10 10 C 1.34773 * 120.00214 * 86.45466 * 9 7 6 11 11 O 1.21363 * 119.99884 * 0.02562 * 10 9 7 12 12 C 1.49351 * 120.00303 * 179.97438 * 10 9 7 13 13 O 1.21376 * 119.99654 * 359.97438 * 12 10 9 14 14 N 1.34773 * 120.00303 * 179.97438 * 12 10 9 15 15 C 1.39745 * 120.00029 * 174.40654 * 14 12 10 16 16 C 1.39343 * 119.95605 * 325.34286 * 15 14 12 17 17 C 1.38465 * 120.42179 * 180.23151 * 16 15 14 18 18 C 1.37689 * 120.33224 * 359.48434 * 17 16 15 19 19 C 1.40756 * 119.89498 * 0.51329 * 18 17 16 20 20 C 1.41406 * 120.21033 * 179.71941 * 19 18 17 21 21 H 1.08003 * 119.99704 * 34.37922 * 20 19 18 22 22 C 1.39925 * 120.00288 * 214.38032 * 20 19 18 23 23 N 1.30835 * 120.00116 * 5.44948 * 22 20 19 24 24 Si 1.86803 * 120.00171 * 185.45315 * 22 20 19 25 25 H 1.48491 * 109.47443 * 59.99497 * 24 22 20 26 26 H 1.48495 * 109.47326 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.46798 * 299.99664 * 24 22 20 28 28 C 1.38303 * 119.95026 * 145.32078 * 15 14 12 29 29 C 1.48559 * 110.99940 * 174.70839 * 4 3 2 30 30 H 1.09000 * 109.46865 * 300.00174 * 1 2 3 31 31 H 1.08996 * 109.47074 * 59.99630 * 1 2 3 32 32 H 1.08996 * 109.47467 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46865 * 239.99826 * 2 1 3 34 34 H 1.08996 * 109.47074 * 120.00369 * 2 1 3 35 35 H 1.09000 * 109.47206 * 60.00035 * 3 2 1 36 36 H 1.09003 * 109.46867 * 299.99729 * 3 2 1 37 37 H 1.08994 * 110.41085 * 82.18271 * 5 4 3 38 38 H 1.09002 * 110.50763 * 319.78988 * 5 4 3 39 39 H 1.09009 * 110.31956 * 264.95118 * 6 5 4 40 40 H 1.08995 * 110.32497 * 142.75170 * 6 5 4 41 41 H 0.97001 * 120.00062 * 266.45060 * 9 7 6 42 42 H 0.97001 * 120.00223 * 354.40912 * 14 12 10 43 43 H 1.07998 * 119.78439 * 359.95659 * 16 15 14 44 44 H 1.08006 * 119.83533 * 179.74860 * 17 16 15 45 45 H 1.07997 * 120.05792 * 180.28130 * 18 17 16 46 46 H 0.96993 * 120.00300 * 180.02562 * 23 22 20 47 47 H 1.08003 * 120.16458 * 0.02562 * 28 15 14 48 48 H 1.09000 * 110.41261 * 40.25589 * 29 4 3 49 49 H 1.09002 * 110.41158 * 277.81482 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4424 -0.0006 5 6 4.0420 0.9649 1.3014 6 6 5.4838 1.5138 1.3564 7 6 5.4835 2.7363 0.4157 8 1 6.1896 2.5857 -0.4010 9 7 5.8205 3.9518 1.1609 10 6 7.1109 4.2980 1.3376 11 8 7.9939 3.6031 0.8790 12 6 7.4544 5.5374 2.0969 13 8 6.5713 6.2331 2.5543 14 7 8.7449 5.8833 2.2740 15 6 9.0649 7.1006 2.8813 16 6 8.2600 8.2177 2.6675 17 6 8.5708 9.4297 3.2605 18 6 9.6737 9.5417 4.0772 19 6 10.4963 8.4220 4.3026 20 6 11.6340 8.5310 5.1353 21 1 11.6141 9.1862 5.9936 22 6 12.7854 7.7900 4.8473 23 7 12.8486 7.0790 3.7508 24 14 14.2324 7.8157 6.0285 25 1 13.7989 7.3046 7.3536 26 1 15.3203 6.9557 5.4973 27 1 14.7286 9.2078 6.1731 28 6 10.1800 7.1946 3.6941 29 6 4.0415 2.8234 -0.1285 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6768 1.9563 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 4.0484 -0.1246 1.3330 38 1 3.4513 1.3649 2.1256 39 1 6.1888 0.7623 1.0005 40 1 5.7346 1.8180 2.3725 41 1 5.1147 4.5075 1.5271 42 1 9.4515 5.2875 1.9800 43 1 7.3906 8.1387 2.0316 44 1 7.9425 10.2906 3.0851 45 1 9.9094 10.4880 4.5411 46 1 13.6466 6.5650 3.5514 47 1 10.8047 6.3295 3.8605 48 1 3.4502 3.5158 0.4706 49 1 4.0476 3.1332 -1.1736 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595194778.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:02 Heat of formation + Delta-G solvation = -47.323205 kcal Electronic energy + Delta-G solvation = -29088.858163 eV Core-core repulsion = 25015.270773 eV Total energy + Delta-G solvation = -4073.587390 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.76680 -39.60965 -38.44311 -37.18263 -35.64916 -34.48052 -33.55031 -33.19989 -30.64240 -29.62323 -29.07226 -28.61941 -25.95721 -25.29656 -24.42978 -22.50546 -21.53042 -21.36213 -21.14257 -20.31997 -19.73329 -18.38542 -17.52524 -16.94002 -16.49410 -16.08499 -15.81605 -15.56642 -15.37205 -14.88123 -14.73070 -14.58243 -14.35381 -14.00066 -13.76441 -13.70885 -13.29302 -13.07029 -12.81036 -12.77109 -12.41517 -12.27346 -12.15390 -11.88442 -11.73357 -11.72562 -11.57232 -11.36731 -11.23712 -11.14310 -11.11090 -10.95746 -10.79540 -10.63005 -10.04144 -9.80160 -9.54176 -9.39843 -9.21048 -9.07150 -8.95219 -7.37176 -7.11002 -6.66538 -4.43418 1.49355 2.41985 2.73989 2.86965 3.08042 3.10805 3.18240 3.49274 3.51957 3.92418 3.95722 4.11626 4.28119 4.56926 4.63236 4.63939 4.72836 4.77114 4.85293 4.92045 5.00099 5.07852 5.20166 5.28327 5.31670 5.43897 5.55253 5.55560 5.61355 5.68147 5.73074 5.78964 5.85530 6.06506 6.16125 6.41052 6.47524 6.54248 6.55230 6.70855 6.88479 7.00691 7.05953 7.22932 7.45898 7.52858 7.75232 7.82430 7.96344 8.04901 8.21022 8.36521 8.60004 8.85287 8.89247 10.26479 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022577 B = 0.001829 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.898871 B =15301.370258 C =16030.998453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C 0.043 3.957 4 N -0.508 5.508 5 C 0.032 3.968 6 C -0.137 4.137 7 C 0.140 3.860 8 H 0.105 0.895 9 N -0.701 5.701 10 C 0.513 3.487 11 O -0.516 6.516 12 C 0.497 3.503 13 O -0.510 6.510 14 N -0.628 5.628 15 C 0.132 3.868 16 C -0.217 4.217 17 C -0.090 4.090 18 C -0.215 4.215 19 C 0.121 3.879 20 C -0.469 4.469 21 H 0.078 0.922 22 C 0.074 3.926 23 N -0.812 5.812 24 Si 0.913 3.087 25 H -0.266 1.266 26 H -0.279 1.279 27 H -0.266 1.266 28 C -0.160 4.160 29 C 0.027 3.973 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.038 0.962 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.047 0.953 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.411 0.589 42 H 0.415 0.585 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.279 0.721 47 H 0.124 0.876 48 H 0.054 0.946 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.757 -13.089 -7.243 23.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.085 4.085 4 N -0.232 5.232 5 C -0.096 4.096 6 C -0.176 4.176 7 C 0.035 3.965 8 H 0.123 0.877 9 N -0.355 5.355 10 C 0.294 3.706 11 O -0.391 6.391 12 C 0.278 3.722 13 O -0.386 6.386 14 N -0.272 5.272 15 C 0.041 3.959 16 C -0.238 4.238 17 C -0.109 4.109 18 C -0.235 4.235 19 C 0.118 3.882 20 C -0.499 4.499 21 H 0.096 0.904 22 C -0.142 4.142 23 N -0.439 5.439 24 Si 0.738 3.262 25 H -0.190 1.190 26 H -0.204 1.204 27 H -0.191 1.191 28 C -0.181 4.181 29 C -0.101 4.101 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.248 0.752 42 H 0.252 0.748 43 H 0.120 0.880 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.090 0.910 47 H 0.142 0.858 48 H 0.072 0.928 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.428 -13.617 -7.866 23.474 hybrid contribution 0.442 0.462 1.121 1.290 sum -16.987 -13.154 -6.745 22.518 Atomic orbital electron populations 1.21744 0.95544 1.01873 1.01830 1.21478 0.95428 0.96043 1.02782 1.22357 0.87254 0.97726 1.01184 1.65415 1.08227 1.18241 1.31324 1.23175 0.94947 1.01187 0.90322 1.22788 0.96789 0.97556 1.00432 1.21750 0.96573 0.83561 0.94576 0.87708 1.45869 1.07575 1.26466 1.55616 1.20333 0.83411 0.86107 0.80799 1.90766 1.47171 1.52886 1.48254 1.19952 0.84248 0.86060 0.81950 1.90765 1.47101 1.52764 1.47924 1.43196 1.06824 1.20337 1.56885 1.17649 0.97658 0.83094 0.97521 1.20307 1.02607 0.92367 1.08476 1.20434 0.96886 0.95652 0.97948 1.21190 0.99379 0.97868 1.05040 1.17384 0.91159 0.89436 0.90246 1.19454 0.96468 1.23046 1.10980 0.90424 1.25835 1.00109 0.93243 0.95002 1.69737 1.29113 1.23237 1.21811 0.86292 0.79913 0.79113 0.80893 1.19029 1.20429 1.19106 1.21164 0.96759 0.99406 1.00794 1.23343 0.93758 0.90748 1.02267 0.92839 0.92611 0.92458 0.91046 0.92014 0.94409 0.90551 0.89712 0.93518 0.89840 0.90425 0.75186 0.74817 0.88041 0.88728 0.88527 0.90966 0.85823 0.92793 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.38 16 2 C -0.12 -0.71 5.99 -26.73 -0.16 -0.87 16 3 C 0.04 0.28 4.81 -3.82 -0.02 0.26 16 4 N -0.51 -3.99 5.37 -229.97 -1.24 -5.22 16 5 C 0.03 0.24 5.73 -2.18 -0.01 0.23 16 6 C -0.14 -1.25 6.78 -25.35 -0.17 -1.42 16 7 C 0.14 1.37 3.36 -66.55 -0.22 1.15 16 8 H 0.10 1.15 7.64 -51.93 -0.40 0.75 16 9 N -0.70 -8.06 5.03 -52.93 -0.27 -8.33 16 10 C 0.51 7.74 7.88 -11.63 -0.09 7.64 16 11 O -0.52 -8.69 16.18 5.49 0.09 -8.60 16 12 C 0.50 8.96 7.60 -11.63 -0.09 8.87 16 13 O -0.51 -10.06 14.25 5.47 0.08 -9.98 16 14 N -0.63 -12.37 5.31 -10.34 -0.05 -12.42 16 15 C 0.13 3.07 6.24 -83.82 -0.52 2.54 16 16 C -0.22 -4.99 8.66 -39.09 -0.34 -5.32 16 17 C -0.09 -2.04 10.01 -39.70 -0.40 -2.44 16 18 C -0.21 -5.20 9.79 -38.83 -0.38 -5.58 16 19 C 0.12 3.16 5.50 -106.85 -0.59 2.57 16 20 C -0.47 -12.24 9.04 -37.75 -0.34 -12.58 16 21 H 0.08 1.94 7.85 -52.48 -0.41 1.53 16 22 C 0.07 1.83 5.31 -17.35 -0.09 1.74 16 23 N -0.81 -20.69 10.97 55.55 0.61 -20.08 16 24 Si 0.91 18.68 29.56 -169.99 -5.03 13.66 16 25 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 26 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 27 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 28 C -0.16 -4.04 8.54 -38.67 -0.33 -4.37 16 29 C 0.03 0.21 6.19 -2.18 -0.01 0.20 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.37 7.26 -51.93 -0.38 0.00 16 35 H 0.04 0.25 7.88 -51.93 -0.41 -0.16 16 36 H 0.08 0.47 8.13 -51.93 -0.42 0.05 16 37 H 0.08 0.60 7.76 -51.93 -0.40 0.20 16 38 H 0.05 0.35 7.83 -51.93 -0.41 -0.05 16 39 H 0.08 0.78 8.14 -51.92 -0.42 0.35 16 40 H 0.08 0.78 7.95 -51.93 -0.41 0.36 16 41 H 0.41 4.31 7.81 -40.82 -0.32 3.99 16 42 H 0.42 7.61 8.30 -40.82 -0.34 7.27 16 43 H 0.10 2.25 6.51 -52.49 -0.34 1.91 16 44 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 45 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 46 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 47 H 0.12 3.21 6.47 -52.48 -0.34 2.87 16 48 H 0.05 0.39 7.59 -51.93 -0.39 0.00 16 49 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 401.60 15.07 6.05 6.05 Total: -1.00 -28.91 401.60 -10.65 -39.56 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -7.49 Total: 13.12 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -3.40 Total: -7.76 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.95 Total: -46.06 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: 0.17 Total: -18.58 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -28.91 -10.65 -39.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595194778.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.768 kcal (2) G-P(sol) polarization free energy of solvation -28.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds