Wall clock time and date at job start Wed Apr 1 2020 03:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47495 * 2 1 4 4 N 1.46901 * 109.47200 * 180.02562 * 3 2 1 5 5 C 1.48567 * 110.99731 * 290.12571 * 4 3 2 6 6 C 1.54379 * 104.59206 * 200.96444 * 5 4 3 7 7 C 1.54257 * 105.06314 * 23.84854 * 6 5 4 8 8 H 1.08999 * 110.32317 * 241.00642 * 7 6 5 9 9 N 1.46503 * 110.32091 * 118.90006 * 7 6 5 10 10 C 1.34773 * 120.00214 * 86.45466 * 9 7 6 11 11 O 1.21363 * 119.99884 * 0.02562 * 10 9 7 12 12 C 1.49351 * 120.00303 * 179.97438 * 10 9 7 13 13 O 1.21376 * 119.99654 * 359.97438 * 12 10 9 14 14 N 1.34773 * 120.00303 * 179.97438 * 12 10 9 15 15 C 1.39745 * 120.00029 * 174.40654 * 14 12 10 16 16 C 1.39343 * 119.95605 * 325.34286 * 15 14 12 17 17 C 1.38465 * 120.42179 * 180.23151 * 16 15 14 18 18 C 1.37689 * 120.33224 * 359.48434 * 17 16 15 19 19 C 1.40756 * 119.89498 * 0.51329 * 18 17 16 20 20 C 1.41406 * 120.21033 * 179.71941 * 19 18 17 21 21 H 1.08003 * 119.99704 * 34.37922 * 20 19 18 22 22 C 1.39925 * 120.00288 * 214.38032 * 20 19 18 23 23 N 1.30835 * 120.00116 * 5.44948 * 22 20 19 24 24 Si 1.86803 * 120.00171 * 185.45315 * 22 20 19 25 25 H 1.48491 * 109.47443 * 59.99497 * 24 22 20 26 26 H 1.48495 * 109.47326 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.46798 * 299.99664 * 24 22 20 28 28 C 1.38303 * 119.95026 * 145.32078 * 15 14 12 29 29 C 1.48559 * 110.99940 * 174.70839 * 4 3 2 30 30 H 1.09000 * 109.46865 * 300.00174 * 1 2 3 31 31 H 1.08996 * 109.47074 * 59.99630 * 1 2 3 32 32 H 1.08996 * 109.47467 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46865 * 239.99826 * 2 1 3 34 34 H 1.08996 * 109.47074 * 120.00369 * 2 1 3 35 35 H 1.09000 * 109.47206 * 60.00035 * 3 2 1 36 36 H 1.09003 * 109.46867 * 299.99729 * 3 2 1 37 37 H 1.08994 * 110.41085 * 82.18271 * 5 4 3 38 38 H 1.09002 * 110.50763 * 319.78988 * 5 4 3 39 39 H 1.09009 * 110.31956 * 264.95118 * 6 5 4 40 40 H 1.08995 * 110.32497 * 142.75170 * 6 5 4 41 41 H 0.97001 * 120.00062 * 266.45060 * 9 7 6 42 42 H 0.97001 * 120.00223 * 354.40912 * 14 12 10 43 43 H 1.07998 * 119.78439 * 359.95659 * 16 15 14 44 44 H 1.08006 * 119.83533 * 179.74860 * 17 16 15 45 45 H 1.07997 * 120.05792 * 180.28130 * 18 17 16 46 46 H 0.96993 * 120.00300 * 180.02562 * 23 22 20 47 47 H 1.08003 * 120.16458 * 0.02562 * 28 15 14 48 48 H 1.09000 * 110.41261 * 40.25589 * 29 4 3 49 49 H 1.09002 * 110.41158 * 277.81482 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4424 -0.0006 5 6 4.0420 0.9649 1.3014 6 6 5.4838 1.5138 1.3564 7 6 5.4835 2.7363 0.4157 8 1 6.1896 2.5857 -0.4010 9 7 5.8205 3.9518 1.1609 10 6 7.1109 4.2980 1.3376 11 8 7.9939 3.6031 0.8790 12 6 7.4544 5.5374 2.0969 13 8 6.5713 6.2331 2.5543 14 7 8.7449 5.8833 2.2740 15 6 9.0649 7.1006 2.8813 16 6 8.2600 8.2177 2.6675 17 6 8.5708 9.4297 3.2605 18 6 9.6737 9.5417 4.0772 19 6 10.4963 8.4220 4.3026 20 6 11.6340 8.5310 5.1353 21 1 11.6141 9.1862 5.9936 22 6 12.7854 7.7900 4.8473 23 7 12.8486 7.0790 3.7508 24 14 14.2324 7.8157 6.0285 25 1 13.7989 7.3046 7.3536 26 1 15.3203 6.9557 5.4973 27 1 14.7286 9.2078 6.1731 28 6 10.1800 7.1946 3.6941 29 6 4.0415 2.8234 -0.1285 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6768 1.9563 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 4.0484 -0.1246 1.3330 38 1 3.4513 1.3649 2.1256 39 1 6.1888 0.7623 1.0005 40 1 5.7346 1.8180 2.3725 41 1 5.1147 4.5075 1.5271 42 1 9.4515 5.2875 1.9800 43 1 7.3906 8.1387 2.0316 44 1 7.9425 10.2906 3.0851 45 1 9.9094 10.4880 4.5411 46 1 13.6466 6.5650 3.5514 47 1 10.8047 6.3295 3.8605 48 1 3.4502 3.5158 0.4706 49 1 4.0476 3.1332 -1.1736 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595194778.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:00 Heat of formation + Delta-G solvation = -65.899372 kcal Electronic energy + Delta-G solvation = -29089.663686 eV Core-core repulsion = 25015.270773 eV Total energy + Delta-G solvation = -4074.392913 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.07625 -40.69556 -39.63035 -38.86492 -36.62175 -35.95713 -35.08956 -34.28452 -31.51763 -31.32006 -30.54149 -29.65035 -27.22417 -26.69147 -25.59653 -23.21838 -23.09717 -22.64203 -22.09155 -21.39484 -21.03113 -19.75370 -19.29171 -18.07764 -17.55783 -17.28301 -17.16045 -16.74338 -16.53851 -16.46658 -16.15798 -15.69993 -15.33048 -14.95137 -14.93526 -14.75353 -14.54377 -14.36360 -14.18745 -13.89076 -13.58511 -13.35184 -13.19187 -12.97778 -12.90727 -12.80698 -12.73617 -12.62889 -12.49807 -12.28380 -12.26427 -11.92709 -11.83544 -11.72083 -11.60840 -11.47494 -11.21661 -11.00347 -10.65428 -10.40853 -9.55433 -9.27813 -8.93207 -8.51661 -6.39909 0.08453 0.93400 1.03843 1.22413 1.41161 1.52096 1.52903 2.06586 2.24343 2.50607 2.79093 3.01527 3.32050 3.42526 3.61604 3.64451 3.96084 4.08720 4.19267 4.21048 4.29235 4.42239 4.46705 4.55719 4.63384 4.64488 4.74491 4.78220 4.79525 4.82163 4.90328 4.94527 4.96282 5.06916 5.10421 5.11797 5.15570 5.21897 5.30209 5.32552 5.42018 5.64113 5.70087 5.77017 5.90324 5.96026 6.00996 6.07518 6.25342 6.41478 6.60363 6.68452 6.86691 6.94696 6.98515 8.41833 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022577 B = 0.001829 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.898871 B =15301.370258 C =16030.998453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.043 3.957 4 N -0.516 5.516 5 C 0.037 3.963 6 C -0.135 4.135 7 C 0.138 3.862 8 H 0.095 0.905 9 N -0.679 5.679 10 C 0.522 3.478 11 O -0.535 6.535 12 C 0.500 3.500 13 O -0.525 6.525 14 N -0.632 5.632 15 C 0.136 3.864 16 C -0.223 4.223 17 C -0.086 4.086 18 C -0.230 4.230 19 C 0.092 3.908 20 C -0.502 4.502 21 H 0.078 0.922 22 C 0.033 3.967 23 N -0.839 5.839 24 Si 0.984 3.016 25 H -0.262 1.262 26 H -0.271 1.271 27 H -0.261 1.261 28 C -0.182 4.182 29 C 0.033 3.967 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.040 0.960 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.051 0.949 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.419 0.581 42 H 0.420 0.580 43 H 0.112 0.888 44 H 0.128 0.872 45 H 0.107 0.893 46 H 0.285 0.715 47 H 0.108 0.892 48 H 0.064 0.936 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.059 -13.535 -7.518 24.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.085 4.085 4 N -0.240 5.240 5 C -0.091 4.091 6 C -0.175 4.175 7 C 0.033 3.967 8 H 0.113 0.887 9 N -0.333 5.333 10 C 0.302 3.698 11 O -0.412 6.412 12 C 0.282 3.718 13 O -0.401 6.401 14 N -0.277 5.277 15 C 0.043 3.957 16 C -0.244 4.244 17 C -0.105 4.105 18 C -0.250 4.250 19 C 0.089 3.911 20 C -0.533 4.533 21 H 0.096 0.904 22 C -0.180 4.180 23 N -0.467 5.467 24 Si 0.806 3.194 25 H -0.186 1.186 26 H -0.195 1.195 27 H -0.185 1.185 28 C -0.203 4.203 29 C -0.095 4.095 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.257 0.743 42 H 0.257 0.743 43 H 0.130 0.870 44 H 0.146 0.854 45 H 0.125 0.875 46 H 0.096 0.904 47 H 0.126 0.874 48 H 0.082 0.918 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.790 -14.078 -8.159 24.856 hybrid contribution 0.705 0.569 1.137 1.454 sum -18.086 -13.509 -7.022 23.641 Atomic orbital electron populations 1.21724 0.94796 1.02218 1.02032 1.21446 0.96037 0.95538 1.02403 1.22399 0.86330 0.98217 1.01532 1.65445 1.09144 1.18071 1.31335 1.23136 0.93797 1.01608 0.90513 1.22749 0.97926 0.97162 0.99614 1.21906 0.97741 0.82782 0.94227 0.88694 1.45826 1.06288 1.26754 1.54457 1.19724 0.84447 0.84931 0.80697 1.90771 1.47961 1.53131 1.49302 1.20442 0.83275 0.86745 0.81331 1.90745 1.47320 1.53598 1.48419 1.43174 1.07902 1.19602 1.57040 1.17714 0.96835 0.84526 0.96581 1.20543 1.02818 0.92465 1.08597 1.20788 0.96452 0.96654 0.96561 1.21387 0.99905 0.97882 1.05847 1.17771 0.91958 0.90410 0.90963 1.19730 0.97495 1.24430 1.11629 0.90384 1.26676 1.02486 0.92394 0.96447 1.69811 1.30110 1.23619 1.23127 0.85212 0.76387 0.79342 0.78497 1.18633 1.19522 1.18513 1.21067 0.97824 0.98902 1.02539 1.23315 0.92239 0.91179 1.02772 0.92725 0.92310 0.92084 0.91606 0.92198 0.94187 0.90030 0.88984 0.93084 0.90111 0.91288 0.74289 0.74260 0.87029 0.85372 0.87463 0.90410 0.87361 0.91822 0.88046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 71.98 0.71 -0.51 16 2 C -0.12 -1.17 5.99 30.59 0.18 -0.99 16 3 C 0.04 0.48 4.81 86.30 0.41 0.89 16 4 N -0.52 -7.08 5.37 -881.48 -4.73 -11.82 16 5 C 0.04 0.51 5.73 86.45 0.50 1.00 16 6 C -0.14 -2.33 6.78 31.49 0.21 -2.11 16 7 C 0.14 2.50 3.36 45.88 0.15 2.65 16 8 H 0.09 1.98 7.64 -2.39 -0.02 1.96 16 9 N -0.68 -14.71 5.03 -439.73 -2.21 -16.92 16 10 C 0.52 15.38 7.88 87.24 0.69 16.07 16 11 O -0.53 -17.81 16.18 -3.29 -0.05 -17.86 16 12 C 0.50 17.81 7.60 87.24 0.66 18.47 16 13 O -0.52 -20.22 14.25 -3.33 -0.05 -20.26 16 14 N -0.63 -25.13 5.31 -304.98 -1.62 -26.75 16 15 C 0.14 6.38 6.24 38.16 0.24 6.62 16 16 C -0.22 -10.14 8.66 22.59 0.20 -9.95 16 17 C -0.09 -3.80 10.01 22.19 0.22 -3.58 16 18 C -0.23 -11.21 9.79 22.76 0.22 -10.98 16 19 C 0.09 4.93 5.50 -21.31 -0.12 4.81 16 20 C -0.50 -26.86 9.04 23.46 0.21 -26.65 16 21 H 0.08 4.00 7.85 -2.91 -0.02 3.98 16 22 C 0.03 1.65 5.31 85.25 0.45 2.10 16 23 N -0.84 -43.68 10.97 21.82 0.24 -43.44 16 24 Si 0.98 38.40 29.56 68.60 2.03 40.43 16 25 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 26 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 27 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 28 C -0.18 -9.48 8.54 22.86 0.20 -9.28 16 29 C 0.03 0.45 6.19 86.45 0.54 0.99 16 30 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.63 7.26 -2.39 -0.02 0.61 16 35 H 0.04 0.44 7.88 -2.39 -0.02 0.42 16 36 H 0.08 0.83 8.13 -2.39 -0.02 0.81 16 37 H 0.09 1.14 7.76 -2.39 -0.02 1.12 16 38 H 0.05 0.67 7.83 -2.39 -0.02 0.65 16 39 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.07 1.31 7.95 -2.39 -0.02 1.30 16 41 H 0.42 8.02 7.81 -92.71 -0.72 7.29 16 42 H 0.42 15.75 8.30 -92.71 -0.77 14.98 16 43 H 0.11 4.81 6.51 -2.91 -0.02 4.79 16 44 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 45 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 46 H 0.29 13.59 8.30 -92.71 -0.77 12.82 16 47 H 0.11 5.88 6.47 -2.91 -0.02 5.86 16 48 H 0.06 0.76 7.59 -2.39 -0.02 0.74 16 49 H 0.10 1.25 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -62.16 401.60 -1.23 -63.39 By element: Atomic # 1 Polarization: 44.20 SS G_CDS: -0.51 Total: 43.68 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 5.68 Total: -10.45 kcal Atomic # 7 Polarization: -90.61 SS G_CDS: -8.33 Total: -98.94 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -0.10 Total: -38.13 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Total: -62.16 -1.23 -63.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595194778.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.505 kcal (2) G-P(sol) polarization free energy of solvation -62.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds