Wall clock time and date at job start Wed Apr 1 2020 03:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47212 * 2 1 4 4 N 1.46903 * 109.47145 * 179.97438 * 3 2 1 5 5 C 1.48531 * 110.99962 * 307.40140 * 4 3 2 6 6 C 1.54937 * 103.22442 * 200.27903 * 5 4 3 7 7 C 1.54597 * 102.92474 * 37.41088 * 6 5 4 8 8 H 1.08996 * 110.39072 * 96.99870 * 7 6 5 9 9 N 1.46496 * 110.30821 * 219.13138 * 7 6 5 10 10 C 1.34779 * 119.99497 * 270.71113 * 9 7 6 11 11 O 1.21359 * 120.00518 * 0.02562 * 10 9 7 12 12 C 1.49361 * 119.99833 * 179.97438 * 10 9 7 13 13 O 1.21371 * 119.99743 * 0.02562 * 12 10 9 14 14 N 1.34779 * 119.99833 * 180.02562 * 12 10 9 15 15 C 1.39735 * 119.99644 * 174.40904 * 14 12 10 16 16 C 1.39351 * 119.95686 * 325.35491 * 15 14 12 17 17 C 1.38470 * 120.42374 * 179.72182 * 16 15 14 18 18 C 1.37689 * 120.33078 * 0.02562 * 17 16 15 19 19 C 1.40747 * 119.89723 * 359.97438 * 18 17 16 20 20 C 1.41410 * 120.20876 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00169 * 34.34023 * 20 19 18 22 22 C 1.39938 * 120.00062 * 214.34753 * 20 19 18 23 23 N 1.30831 * 119.99623 * 5.45434 * 22 20 19 24 24 Si 1.86797 * 120.00145 * 185.45276 * 22 20 19 25 25 H 1.48500 * 109.46935 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47243 * 119.99893 * 24 22 20 27 27 H 1.48501 * 109.47022 * 239.99795 * 24 22 20 28 28 C 1.38304 * 119.95252 * 145.07809 * 15 14 12 29 29 C 1.47895 * 110.99941 * 190.00071 * 4 3 2 30 30 H 1.08996 * 109.47549 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46948 * 300.00060 * 1 2 3 32 32 H 1.08997 * 109.47290 * 59.99884 * 1 2 3 33 33 H 1.09003 * 109.46948 * 239.99940 * 2 1 3 34 34 H 1.08995 * 109.46802 * 120.00273 * 2 1 3 35 35 H 1.09003 * 109.47212 * 60.00102 * 3 2 1 36 36 H 1.08997 * 109.47088 * 300.00240 * 3 2 1 37 37 H 1.09008 * 110.66577 * 318.70722 * 5 4 3 38 38 H 1.08995 * 110.67034 * 81.67533 * 5 4 3 39 39 H 1.08999 * 110.72081 * 279.05117 * 6 5 4 40 40 H 1.09004 * 110.72539 * 155.77312 * 6 5 4 41 41 H 0.96992 * 120.00785 * 90.71867 * 9 7 6 42 42 H 0.96992 * 120.00304 * 354.40589 * 14 12 10 43 43 H 1.08000 * 119.78265 * 359.70385 * 16 15 14 44 44 H 1.08003 * 119.83391 * 179.97438 * 17 16 15 45 45 H 1.08004 * 120.05342 * 179.97438 * 18 17 16 46 46 H 0.96999 * 119.99689 * 180.02562 * 23 22 20 47 47 H 1.08003 * 120.16145 * 0.27988 * 28 15 14 48 48 H 1.08997 * 109.91933 * 26.49019 * 29 4 3 49 49 H 1.09006 * 109.91516 * 265.19829 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4425 0.0006 5 6 4.0409 0.6004 1.1025 6 6 5.4886 1.1226 1.2807 7 6 5.3379 2.6442 1.0524 8 1 5.2535 3.1648 2.0062 9 7 6.4789 3.1597 0.2917 10 6 7.5807 3.5896 0.9381 11 8 7.6278 3.5493 2.1501 12 6 8.7442 4.1147 0.1626 13 8 8.6973 4.1545 -1.0495 14 7 9.8462 4.5441 0.8090 15 6 10.9778 4.9254 0.0832 16 6 11.3027 4.2619 -1.0984 17 6 12.4185 4.6355 -1.8283 18 6 13.2202 5.6672 -1.3938 19 6 12.9047 6.3468 -0.2023 20 6 13.7231 7.4077 0.2497 21 1 14.2026 8.0616 -0.4636 22 6 13.9119 7.6103 1.6215 23 7 13.4199 6.7569 2.4825 24 14 14.8663 9.0990 2.2231 25 1 15.3147 9.9034 1.0582 26 1 13.9933 9.9288 3.0917 27 1 16.0502 8.6480 2.9979 28 6 11.7705 5.9645 0.5355 29 6 4.0390 2.8022 0.2404 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 3.4629 0.7503 2.0146 38 1 4.0410 -0.4516 0.8172 39 1 6.1513 0.6844 0.5344 40 1 5.8514 0.9178 2.2880 41 1 6.4415 3.1917 -0.6770 42 1 9.8538 4.5886 1.7778 43 1 10.6804 3.4509 -1.4469 44 1 12.6618 4.1145 -2.7425 45 1 14.0897 5.9547 -1.9664 46 1 13.5504 6.8975 3.4333 47 1 11.5197 6.4795 1.4511 48 1 3.3156 3.3881 0.8075 49 1 4.2525 3.2906 -0.7105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595194779.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:06 Heat of formation + Delta-G solvation = -46.614153 kcal Electronic energy + Delta-G solvation = -29080.945226 eV Core-core repulsion = 25007.388583 eV Total energy + Delta-G solvation = -4073.556643 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.74658 -39.63562 -38.45553 -37.16468 -35.66308 -34.45950 -33.50526 -33.17758 -30.68731 -29.61039 -29.06978 -28.60315 -25.92487 -25.28364 -24.40351 -22.71839 -21.48296 -21.19330 -20.86503 -20.65223 -19.74250 -18.36714 -17.51486 -16.92839 -16.45630 -15.98974 -15.81659 -15.56404 -15.41409 -14.91920 -14.80363 -14.69477 -14.11502 -13.91540 -13.82504 -13.70803 -13.28084 -13.01255 -12.81862 -12.62658 -12.44119 -12.40040 -12.18575 -11.92958 -11.71857 -11.68255 -11.57207 -11.32544 -11.21993 -11.16001 -11.12940 -11.09542 -10.79586 -10.58591 -9.99963 -9.79008 -9.52147 -9.37464 -9.21436 -9.03560 -8.85219 -7.35585 -7.09572 -6.65775 -4.42351 1.51523 2.46669 2.74669 2.87482 3.09359 3.14255 3.17855 3.50196 3.53250 3.87816 3.96518 4.10377 4.32752 4.55151 4.58355 4.65357 4.74257 4.78801 4.84491 4.90083 4.97364 5.07965 5.22261 5.27448 5.29804 5.40358 5.50128 5.56821 5.58924 5.62282 5.71651 5.81025 5.81624 6.16945 6.18688 6.41846 6.49352 6.56046 6.58288 6.72712 6.90262 7.02054 7.09769 7.24276 7.47696 7.55014 7.77197 7.84213 7.98079 8.06768 8.22568 8.38495 8.61740 8.86480 8.90593 10.27196 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025551 B = 0.001792 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.580765 B =15617.861192 C =16243.003933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C 0.045 3.955 4 N -0.516 5.516 5 C 0.036 3.964 6 C -0.136 4.136 7 C 0.135 3.865 8 H 0.100 0.900 9 N -0.695 5.695 10 C 0.512 3.488 11 O -0.520 6.520 12 C 0.497 3.503 13 O -0.508 6.508 14 N -0.628 5.628 15 C 0.132 3.868 16 C -0.216 4.216 17 C -0.090 4.090 18 C -0.215 4.215 19 C 0.120 3.880 20 C -0.468 4.468 21 H 0.078 0.922 22 C 0.073 3.927 23 N -0.812 5.812 24 Si 0.912 3.088 25 H -0.262 1.262 26 H -0.274 1.274 27 H -0.275 1.275 28 C -0.160 4.160 29 C 0.029 3.971 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.048 0.952 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.415 0.585 42 H 0.415 0.585 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.278 0.722 47 H 0.124 0.876 48 H 0.059 0.941 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.390 -10.645 -0.250 23.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.083 4.083 4 N -0.240 5.240 5 C -0.092 4.092 6 C -0.176 4.176 7 C 0.029 3.971 8 H 0.118 0.882 9 N -0.350 5.350 10 C 0.293 3.707 11 O -0.396 6.396 12 C 0.278 3.722 13 O -0.383 6.383 14 N -0.273 5.273 15 C 0.041 3.959 16 C -0.237 4.237 17 C -0.109 4.109 18 C -0.234 4.234 19 C 0.117 3.883 20 C -0.499 4.499 21 H 0.097 0.903 22 C -0.142 4.142 23 N -0.439 5.439 24 Si 0.737 3.263 25 H -0.186 1.186 26 H -0.200 1.200 27 H -0.201 1.201 28 C -0.181 4.181 29 C -0.100 4.100 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.252 0.748 42 H 0.251 0.749 43 H 0.120 0.880 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.089 0.911 47 H 0.142 0.858 48 H 0.077 0.923 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.268 -10.891 -0.483 23.900 hybrid contribution 0.112 0.941 1.256 1.573 sum -21.156 -9.951 0.773 23.392 Atomic orbital electron populations 1.21737 0.95460 1.01886 1.01857 1.21594 0.95750 0.96165 1.02801 1.22388 0.87243 0.97537 1.01134 1.64847 1.08028 1.07852 1.43301 1.23245 0.94488 0.98788 0.92708 1.22979 0.96940 0.94438 1.03196 1.21889 0.84535 0.94903 0.95744 0.88200 1.45824 1.14650 1.63007 1.11501 1.20360 0.84092 0.78413 0.87807 1.90752 1.81225 1.54017 1.13571 1.19943 0.83865 0.80472 0.87918 1.90770 1.81083 1.53294 1.13194 1.43189 1.11576 1.61428 1.11133 1.17650 0.86948 0.97093 0.94237 1.20320 1.00959 1.04403 0.97989 1.20437 0.94924 0.97556 0.98010 1.21193 1.01145 0.99873 1.01230 1.17396 0.89722 0.91180 0.90005 1.19526 1.26255 1.12279 0.91808 0.90339 1.25841 0.94975 0.96597 0.96810 1.69759 1.37854 1.33034 1.03293 0.86196 0.79467 0.81325 0.79295 1.18562 1.19952 1.20056 1.21167 0.96113 0.97543 1.03274 1.23160 0.94991 0.91244 1.00569 0.92460 0.92845 0.92555 0.91001 0.91848 0.94550 0.90428 0.93381 0.89490 0.89816 0.90070 0.74761 0.74868 0.88016 0.88711 0.88527 0.91112 0.85838 0.92304 0.89151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.36 16 2 C -0.13 -0.72 5.59 -26.73 -0.15 -0.87 16 3 C 0.05 0.29 5.03 -3.82 -0.02 0.27 16 4 N -0.52 -4.07 5.40 -230.45 -1.24 -5.31 16 5 C 0.04 0.26 5.11 -1.90 -0.01 0.25 16 6 C -0.14 -1.22 6.78 -24.87 -0.17 -1.39 16 7 C 0.13 1.30 3.34 -66.57 -0.22 1.08 16 8 H 0.10 1.05 7.56 -51.93 -0.39 0.65 16 9 N -0.70 -8.18 5.05 -52.95 -0.27 -8.45 16 10 C 0.51 7.80 7.89 -11.63 -0.09 7.71 16 11 O -0.52 -8.76 16.14 5.49 0.09 -8.68 16 12 C 0.50 9.05 7.60 -11.63 -0.09 8.97 16 13 O -0.51 -10.14 14.26 5.48 0.08 -10.07 16 14 N -0.63 -12.46 5.31 -10.34 -0.05 -12.52 16 15 C 0.13 3.08 6.24 -83.82 -0.52 2.56 16 16 C -0.22 -5.00 8.65 -39.08 -0.34 -5.33 16 17 C -0.09 -2.05 10.01 -39.70 -0.40 -2.45 16 18 C -0.21 -5.21 9.79 -38.83 -0.38 -5.59 16 19 C 0.12 3.15 5.50 -106.85 -0.59 2.56 16 20 C -0.47 -12.26 9.04 -37.74 -0.34 -12.60 16 21 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 22 C 0.07 1.82 5.31 -17.34 -0.09 1.73 16 23 N -0.81 -20.76 10.97 55.55 0.61 -20.15 16 24 Si 0.91 18.74 29.56 -169.99 -5.03 13.71 16 25 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 26 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 27 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 28 C -0.16 -4.05 8.54 -38.66 -0.33 -4.38 16 29 C 0.03 0.23 6.47 -2.76 -0.02 0.21 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.36 6.79 -51.93 -0.35 0.01 16 35 H 0.04 0.23 7.81 -51.93 -0.41 -0.18 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.33 8.00 -51.92 -0.42 -0.09 16 38 H 0.09 0.59 7.65 -51.93 -0.40 0.20 16 39 H 0.08 0.83 8.06 -51.93 -0.42 0.41 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.42 4.58 7.82 -40.82 -0.32 4.26 16 42 H 0.41 7.64 8.30 -40.82 -0.34 7.31 16 43 H 0.10 2.28 6.52 -52.49 -0.34 1.93 16 44 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 45 H 0.10 2.19 8.06 -52.48 -0.42 1.76 16 46 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 47 H 0.12 3.22 6.47 -52.48 -0.34 2.88 16 48 H 0.06 0.42 7.57 -51.93 -0.39 0.03 16 49 H 0.09 0.72 7.65 -51.93 -0.40 0.32 16 LS Contribution 400.11 15.07 6.03 6.03 Total: -1.00 -29.12 400.11 -10.61 -39.73 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -7.44 Total: 13.32 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -3.39 Total: -7.63 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: -0.96 Total: -46.43 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.17 Total: -18.74 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.12 -10.61 -39.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595194779.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.881 kcal (2) G-P(sol) polarization free energy of solvation -29.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds