Wall clock time and date at job start Wed Apr 1 2020 03:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47212 * 2 1 4 4 N 1.46903 * 109.47145 * 179.97438 * 3 2 1 5 5 C 1.48531 * 110.99962 * 307.40140 * 4 3 2 6 6 C 1.54937 * 103.22442 * 200.27903 * 5 4 3 7 7 C 1.54597 * 102.92474 * 37.41088 * 6 5 4 8 8 H 1.08996 * 110.39072 * 96.99870 * 7 6 5 9 9 N 1.46496 * 110.30821 * 219.13138 * 7 6 5 10 10 C 1.34779 * 119.99497 * 270.71113 * 9 7 6 11 11 O 1.21359 * 120.00518 * 0.02562 * 10 9 7 12 12 C 1.49361 * 119.99833 * 179.97438 * 10 9 7 13 13 O 1.21371 * 119.99743 * 0.02562 * 12 10 9 14 14 N 1.34779 * 119.99833 * 180.02562 * 12 10 9 15 15 C 1.39735 * 119.99644 * 174.40904 * 14 12 10 16 16 C 1.39351 * 119.95686 * 325.35491 * 15 14 12 17 17 C 1.38470 * 120.42374 * 179.72182 * 16 15 14 18 18 C 1.37689 * 120.33078 * 0.02562 * 17 16 15 19 19 C 1.40747 * 119.89723 * 359.97438 * 18 17 16 20 20 C 1.41410 * 120.20876 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00169 * 34.34023 * 20 19 18 22 22 C 1.39938 * 120.00062 * 214.34753 * 20 19 18 23 23 N 1.30831 * 119.99623 * 5.45434 * 22 20 19 24 24 Si 1.86797 * 120.00145 * 185.45276 * 22 20 19 25 25 H 1.48500 * 109.46935 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47243 * 119.99893 * 24 22 20 27 27 H 1.48501 * 109.47022 * 239.99795 * 24 22 20 28 28 C 1.38304 * 119.95252 * 145.07809 * 15 14 12 29 29 C 1.47895 * 110.99941 * 190.00071 * 4 3 2 30 30 H 1.08996 * 109.47549 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46948 * 300.00060 * 1 2 3 32 32 H 1.08997 * 109.47290 * 59.99884 * 1 2 3 33 33 H 1.09003 * 109.46948 * 239.99940 * 2 1 3 34 34 H 1.08995 * 109.46802 * 120.00273 * 2 1 3 35 35 H 1.09003 * 109.47212 * 60.00102 * 3 2 1 36 36 H 1.08997 * 109.47088 * 300.00240 * 3 2 1 37 37 H 1.09008 * 110.66577 * 318.70722 * 5 4 3 38 38 H 1.08995 * 110.67034 * 81.67533 * 5 4 3 39 39 H 1.08999 * 110.72081 * 279.05117 * 6 5 4 40 40 H 1.09004 * 110.72539 * 155.77312 * 6 5 4 41 41 H 0.96992 * 120.00785 * 90.71867 * 9 7 6 42 42 H 0.96992 * 120.00304 * 354.40589 * 14 12 10 43 43 H 1.08000 * 119.78265 * 359.70385 * 16 15 14 44 44 H 1.08003 * 119.83391 * 179.97438 * 17 16 15 45 45 H 1.08004 * 120.05342 * 179.97438 * 18 17 16 46 46 H 0.96999 * 119.99689 * 180.02562 * 23 22 20 47 47 H 1.08003 * 120.16145 * 0.27988 * 28 15 14 48 48 H 1.08997 * 109.91933 * 26.49019 * 29 4 3 49 49 H 1.09006 * 109.91516 * 265.19829 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4425 0.0006 5 6 4.0409 0.6004 1.1025 6 6 5.4886 1.1226 1.2807 7 6 5.3379 2.6442 1.0524 8 1 5.2535 3.1648 2.0062 9 7 6.4789 3.1597 0.2917 10 6 7.5807 3.5896 0.9381 11 8 7.6278 3.5493 2.1501 12 6 8.7442 4.1147 0.1626 13 8 8.6973 4.1545 -1.0495 14 7 9.8462 4.5441 0.8090 15 6 10.9778 4.9254 0.0832 16 6 11.3027 4.2619 -1.0984 17 6 12.4185 4.6355 -1.8283 18 6 13.2202 5.6672 -1.3938 19 6 12.9047 6.3468 -0.2023 20 6 13.7231 7.4077 0.2497 21 1 14.2026 8.0616 -0.4636 22 6 13.9119 7.6103 1.6215 23 7 13.4199 6.7569 2.4825 24 14 14.8663 9.0990 2.2231 25 1 15.3147 9.9034 1.0582 26 1 13.9933 9.9288 3.0917 27 1 16.0502 8.6480 2.9979 28 6 11.7705 5.9645 0.5355 29 6 4.0390 2.8022 0.2404 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 3.4629 0.7503 2.0146 38 1 4.0410 -0.4516 0.8172 39 1 6.1513 0.6844 0.5344 40 1 5.8514 0.9178 2.2880 41 1 6.4415 3.1917 -0.6770 42 1 9.8538 4.5886 1.7778 43 1 10.6804 3.4509 -1.4469 44 1 12.6618 4.1145 -2.7425 45 1 14.0897 5.9547 -1.9664 46 1 13.5504 6.8975 3.4333 47 1 11.5197 6.4795 1.4511 48 1 3.3156 3.3881 0.8075 49 1 4.2525 3.2906 -0.7105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595194779.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:05 Heat of formation + Delta-G solvation = -65.466263 kcal Electronic energy + Delta-G solvation = -29081.762715 eV Core-core repulsion = 25007.388583 eV Total energy + Delta-G solvation = -4074.374132 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.06096 -40.69941 -39.66014 -38.86057 -36.63084 -35.95696 -35.08389 -34.22582 -31.51512 -31.34360 -30.54033 -29.64024 -27.22085 -26.65786 -25.56994 -23.30839 -23.16662 -22.64931 -21.81410 -21.31123 -21.26935 -19.74461 -19.28923 -18.09574 -17.60770 -17.17193 -16.96329 -16.86787 -16.51592 -16.45094 -16.23869 -15.65799 -15.34992 -15.27159 -14.78153 -14.60788 -14.48371 -14.27513 -14.18930 -13.93380 -13.57627 -13.23752 -13.17806 -13.05536 -12.87179 -12.82409 -12.81340 -12.64289 -12.47926 -12.27934 -12.24742 -11.92557 -11.80621 -11.74207 -11.59891 -11.54554 -11.21661 -11.00948 -10.63683 -10.38728 -9.43291 -9.27270 -8.92853 -8.51652 -6.39672 0.09576 0.93101 1.03876 1.25297 1.41344 1.50483 1.55571 2.07549 2.24556 2.56908 2.79240 2.94657 3.31702 3.42632 3.64596 3.65367 4.00132 4.07681 4.14648 4.22654 4.29692 4.42711 4.45868 4.56494 4.63796 4.65298 4.68145 4.78868 4.80570 4.82498 4.89458 4.96203 4.97215 5.05399 5.11037 5.12200 5.20366 5.23835 5.30721 5.33274 5.40561 5.65560 5.71019 5.81419 5.92207 5.97903 6.03892 6.08252 6.26362 6.42156 6.61162 6.69341 6.87718 6.94967 6.99118 8.42168 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025551 B = 0.001792 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.580765 B =15617.861192 C =16243.003933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.045 3.955 4 N -0.526 5.526 5 C 0.042 3.958 6 C -0.135 4.135 7 C 0.131 3.869 8 H 0.095 0.905 9 N -0.676 5.676 10 C 0.522 3.478 11 O -0.537 6.537 12 C 0.499 3.501 13 O -0.524 6.524 14 N -0.632 5.632 15 C 0.136 3.864 16 C -0.223 4.223 17 C -0.086 4.086 18 C -0.230 4.230 19 C 0.091 3.909 20 C -0.501 4.501 21 H 0.078 0.922 22 C 0.032 3.968 23 N -0.840 5.840 24 Si 0.985 3.015 25 H -0.259 1.259 26 H -0.268 1.268 27 H -0.268 1.268 28 C -0.181 4.181 29 C 0.034 3.966 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.420 0.580 42 H 0.420 0.580 43 H 0.111 0.889 44 H 0.128 0.872 45 H 0.107 0.893 46 H 0.285 0.715 47 H 0.109 0.891 48 H 0.071 0.929 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.692 -11.106 -0.304 25.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.083 4.083 4 N -0.251 5.251 5 C -0.086 4.086 6 C -0.174 4.174 7 C 0.027 3.973 8 H 0.113 0.887 9 N -0.330 5.330 10 C 0.302 3.698 11 O -0.415 6.415 12 C 0.282 3.718 13 O -0.400 6.400 14 N -0.278 5.278 15 C 0.043 3.957 16 C -0.244 4.244 17 C -0.105 4.105 18 C -0.250 4.250 19 C 0.088 3.912 20 C -0.531 4.531 21 H 0.096 0.904 22 C -0.180 4.180 23 N -0.467 5.467 24 Si 0.806 3.194 25 H -0.182 1.182 26 H -0.192 1.192 27 H -0.193 1.193 28 C -0.203 4.203 29 C -0.094 4.094 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.259 0.741 42 H 0.257 0.743 43 H 0.129 0.871 44 H 0.146 0.854 45 H 0.125 0.875 46 H 0.096 0.904 47 H 0.127 0.873 48 H 0.089 0.911 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -22.621 -11.384 -0.558 25.330 hybrid contribution 0.407 0.980 1.209 1.609 sum -22.214 -10.403 0.650 24.538 Atomic orbital electron populations 1.21720 0.94751 1.02226 1.02047 1.21559 0.96328 0.95570 1.02515 1.22423 0.86328 0.98112 1.01404 1.64865 1.08982 1.07658 1.43593 1.23218 0.93278 0.99015 0.93053 1.22939 0.98003 0.93681 1.02777 1.22092 0.84323 0.95303 0.95604 0.88662 1.45824 1.13983 1.61264 1.11887 1.19731 0.84003 0.78878 0.87203 1.90757 1.81461 1.55261 1.13979 1.20457 0.84106 0.79389 0.87885 1.90750 1.81512 1.53690 1.14069 1.43165 1.11404 1.61857 1.11327 1.17713 0.87485 0.96139 0.94322 1.20548 1.01295 1.04564 0.97992 1.20788 0.94044 0.96793 0.98838 1.21389 1.02066 1.00503 1.01022 1.17781 0.90267 0.91968 0.91137 1.19779 1.27387 1.13112 0.92857 0.90426 1.26682 0.95660 0.99246 0.96447 1.69826 1.38589 1.34475 1.03844 0.85108 0.78078 0.77499 0.78692 1.18214 1.19240 1.19308 1.21069 0.97009 0.98904 1.03283 1.23118 0.94123 0.91711 1.00462 0.92077 0.92568 0.92453 0.91714 0.91681 0.94058 0.90339 0.92442 0.88795 0.90719 0.90269 0.74117 0.74275 0.87106 0.85396 0.87452 0.90436 0.87342 0.91072 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 71.98 0.71 -0.46 16 2 C -0.12 -1.17 5.59 30.59 0.17 -1.00 16 3 C 0.05 0.50 5.03 86.30 0.43 0.93 16 4 N -0.53 -7.26 5.40 -883.02 -4.76 -12.02 16 5 C 0.04 0.54 5.11 86.65 0.44 0.98 16 6 C -0.13 -2.23 6.78 31.80 0.22 -2.02 16 7 C 0.13 2.35 3.34 45.87 0.15 2.50 16 8 H 0.10 1.86 7.56 -2.39 -0.02 1.84 16 9 N -0.68 -15.11 5.05 -439.79 -2.22 -17.33 16 10 C 0.52 15.54 7.89 87.24 0.69 16.23 16 11 O -0.54 -17.82 16.14 -3.28 -0.05 -17.87 16 12 C 0.50 18.04 7.60 87.24 0.66 18.70 16 13 O -0.52 -20.60 14.26 -3.31 -0.05 -20.65 16 14 N -0.63 -25.33 5.31 -304.97 -1.62 -26.95 16 15 C 0.14 6.42 6.24 38.16 0.24 6.66 16 16 C -0.22 -10.23 8.65 22.59 0.20 -10.04 16 17 C -0.09 -3.84 10.01 22.20 0.22 -3.61 16 18 C -0.23 -11.25 9.79 22.75 0.22 -11.03 16 19 C 0.09 4.92 5.50 -21.31 -0.12 4.80 16 20 C -0.50 -26.87 9.04 23.46 0.21 -26.65 16 21 H 0.08 4.01 7.85 -2.91 -0.02 3.99 16 22 C 0.03 1.63 5.31 85.25 0.45 2.08 16 23 N -0.84 -43.77 10.97 21.83 0.24 -43.53 16 24 Si 0.98 38.52 29.56 68.60 2.03 40.55 16 25 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 26 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 27 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 28 C -0.18 -9.48 8.54 22.86 0.20 -9.28 16 29 C 0.03 0.48 6.47 86.45 0.56 1.04 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.06 0.60 6.79 -2.39 -0.02 0.59 16 35 H 0.04 0.42 7.81 -2.39 -0.02 0.41 16 36 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.06 0.64 8.00 -2.38 -0.02 0.63 16 38 H 0.09 1.09 7.65 -2.39 -0.02 1.08 16 39 H 0.07 1.39 8.06 -2.39 -0.02 1.37 16 40 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.42 8.69 7.82 -92.71 -0.73 7.97 16 42 H 0.42 15.81 8.30 -92.71 -0.77 15.04 16 43 H 0.11 4.84 6.52 -2.91 -0.02 4.82 16 44 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 45 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 46 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 47 H 0.11 5.90 6.47 -2.91 -0.02 5.88 16 48 H 0.07 0.85 7.57 -2.39 -0.02 0.83 16 49 H 0.09 1.28 7.65 -2.38 -0.02 1.26 16 Total: -1.00 -62.52 400.11 -1.29 -63.81 By element: Atomic # 1 Polarization: 44.68 SS G_CDS: -0.51 Total: 44.16 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 5.66 Total: -10.17 kcal Atomic # 7 Polarization: -91.47 SS G_CDS: -8.37 Total: -99.84 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -0.10 Total: -38.52 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Total: -62.52 -1.29 -63.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595194779.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.652 kcal (2) G-P(sol) polarization free energy of solvation -62.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds