Wall clock time and date at job start Wed Apr 1 2020 03:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00208 * 2 1 4 4 N 1.46497 * 109.46999 * 125.00184 * 3 2 1 5 5 C 1.46502 * 119.99950 * 270.00233 * 4 3 2 6 6 C 1.50700 * 109.47157 * 270.00011 * 5 4 3 7 7 H 1.07991 * 119.99782 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99963 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99824 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00129 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47004 * 90.00177 * 10 8 6 12 12 H 1.48495 * 109.47276 * 210.00172 * 10 8 6 13 13 H 1.48505 * 109.46997 * 330.00363 * 10 8 6 14 14 C 1.34776 * 120.00138 * 90.00232 * 4 3 2 15 15 O 1.21590 * 120.00252 * 179.97438 * 14 4 3 16 16 N 1.34772 * 119.99828 * 359.97438 * 14 4 3 17 17 C 1.39954 * 120.00090 * 184.58858 * 16 14 4 18 18 C 1.38864 * 120.06756 * 324.91581 * 17 16 14 19 19 C 1.38113 * 119.92678 * 180.02562 * 18 17 16 20 20 C 1.38285 * 120.07159 * 0.02562 * 19 18 17 21 21 C 1.50700 * 119.93098 * 179.97438 * 20 19 18 22 22 H 1.09004 * 109.50802 * 24.91014 * 21 20 19 23 23 C 1.53105 * 109.50443 * 264.78111 * 21 20 19 24 24 N 1.47016 * 109.25362 * 183.21629 * 23 21 20 25 25 C 1.47112 * 110.77652 * 58.61781 * 24 23 21 26 26 C 1.53099 * 109.20788 * 301.40742 * 25 24 23 27 27 O 1.43013 * 109.29544 * 56.82998 * 26 25 24 28 28 C 1.38276 * 120.13588 * 0.22919 * 20 19 18 29 29 C 1.38109 * 120.07648 * 359.49117 * 28 20 19 30 30 H 1.07994 * 120.00001 * 359.97438 * 1 2 3 31 31 H 1.08002 * 120.00254 * 179.97438 * 1 2 3 32 32 H 1.08004 * 120.00042 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.46709 * 5.00582 * 3 2 1 34 34 H 1.08999 * 109.47155 * 245.00295 * 3 2 1 35 35 H 1.09005 * 109.47272 * 30.00495 * 5 4 3 36 36 H 1.09005 * 109.47067 * 149.99720 * 5 4 3 37 37 H 0.96997 * 119.99791 * 179.97438 * 9 8 6 38 38 H 0.97005 * 120.00501 * 4.59537 * 16 14 4 39 39 H 1.07999 * 120.03884 * 0.04245 * 18 17 16 40 40 H 1.07999 * 119.96842 * 179.97438 * 19 18 17 41 41 H 1.08996 * 109.50453 * 303.15164 * 23 21 20 42 42 H 1.08997 * 109.50618 * 63.28095 * 23 21 20 43 43 H 1.00897 * 110.99632 * 182.38781 * 24 23 21 44 44 H 1.08999 * 109.56120 * 181.46446 * 25 24 23 45 45 H 1.09003 * 109.49582 * 61.30680 * 25 24 23 46 46 H 1.08999 * 109.50595 * 296.87631 * 26 25 24 47 47 H 1.08992 * 109.50456 * 176.78711 * 26 25 24 48 48 H 1.08010 * 119.96452 * 179.72432 * 28 20 19 49 49 H 1.07994 * 120.04158 * 180.25079 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8648 2.4249 6 6 2.8443 3.3435 2.4805 7 1 3.3033 3.8369 1.6366 8 6 2.5194 4.0663 3.6088 9 7 2.7681 5.3568 3.6571 10 14 1.7249 3.2129 5.0682 11 1 2.7809 2.7217 5.9894 12 1 0.8489 4.1731 5.7863 13 1 0.9132 2.0654 4.5888 14 6 4.2497 0.8661 0.9823 15 8 5.0220 0.8886 1.9212 16 7 4.6496 0.3753 -0.2074 17 6 5.9206 -0.1961 -0.3373 18 6 6.9917 0.3192 0.3809 19 6 8.2448 -0.2466 0.2502 20 6 8.4336 -1.3246 -0.5951 21 6 9.8025 -1.9391 -0.7358 22 1 10.3855 -1.7389 0.1632 23 6 10.5115 -1.3352 -1.9510 24 7 11.8142 -1.9930 -2.1286 25 6 11.6460 -3.4429 -2.3121 26 6 10.9251 -4.0246 -1.0932 27 8 9.6753 -3.3519 -0.9178 28 6 7.3702 -1.8365 -1.3155 29 6 6.1134 -1.2790 -1.1849 30 1 -0.5400 0.9353 0.0004 31 1 -0.5401 -0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3586 2.1316 0.0897 34 1 2.6213 1.4026 -0.9314 35 1 1.4888 1.6964 2.5460 36 1 3.0990 1.3600 3.2260 37 1 2.5392 5.8654 4.4507 38 1 4.0566 0.4181 -0.9739 39 1 6.8449 1.1612 1.0411 40 1 9.0783 0.1539 0.8080 41 1 9.9018 -1.4885 -2.8414 42 1 10.6616 -0.2675 -1.7913 43 1 12.3217 -1.5875 -2.9007 44 1 12.6236 -3.9135 -2.4158 45 1 11.0544 -3.6299 -3.2084 46 1 11.5413 -3.8850 -0.2050 47 1 10.7470 -5.0885 -1.2492 48 1 7.5217 -2.6758 -1.9783 49 1 5.2824 -1.6819 -1.7448 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595245129.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:12 Heat of formation + Delta-G solvation = -2.280367 kcal Electronic energy + Delta-G solvation = -29812.457617 eV Core-core repulsion = 25740.823431 eV Total energy + Delta-G solvation = -4071.634186 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.48551 -39.81088 -38.32888 -35.95505 -34.93706 -34.66521 -33.17629 -32.34111 -31.84750 -30.79714 -29.16247 -27.98529 -26.32037 -25.59144 -24.26528 -23.00033 -22.53444 -21.38986 -20.52704 -20.14248 -19.29111 -17.95308 -17.42805 -17.03368 -16.91632 -16.45486 -15.82955 -15.29490 -15.13118 -15.06198 -14.78478 -14.61006 -14.46320 -14.26306 -14.06326 -13.81524 -13.58841 -13.28191 -13.24221 -12.93817 -12.59762 -12.33359 -12.22717 -11.90440 -11.72961 -11.64430 -11.43442 -11.26428 -11.20128 -10.96883 -10.74717 -10.53898 -10.24565 -10.13240 -9.83731 -9.60695 -9.34830 -9.31760 -8.92670 -8.74578 -8.59174 -8.02553 -7.64722 -6.09254 -4.08077 1.36094 1.58388 2.28019 3.13657 3.29988 3.35967 3.38223 3.43678 3.63892 3.74245 4.03526 4.32384 4.39563 4.57652 4.64885 4.72024 4.81214 4.92191 5.03998 5.06305 5.08676 5.19544 5.23495 5.26038 5.31071 5.38513 5.41027 5.49176 5.54449 5.60727 5.74596 5.84040 5.87755 6.03587 6.15748 6.34741 6.40960 6.44120 6.62815 6.65756 6.67760 6.76456 6.78628 6.82863 6.88642 6.98440 7.23604 7.26950 7.45523 7.61087 8.40561 8.46468 8.93420 9.10675 9.51001 11.04018 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016047 B = 0.002300 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.437630 B =12171.974860 C =13208.415356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.173 4.173 3 C 0.137 3.863 4 N -0.598 5.598 5 C 0.232 3.768 6 C -0.529 4.529 7 H 0.075 0.925 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.702 3.298 15 O -0.565 6.565 16 N -0.695 5.695 17 C 0.184 3.816 18 C -0.120 4.120 19 C -0.086 4.086 20 C -0.117 4.117 21 C 0.142 3.858 22 H 0.074 0.926 23 C 0.031 3.969 24 N -0.690 5.690 25 C 0.018 3.982 26 C 0.062 3.938 27 O -0.376 6.376 28 C -0.074 4.074 29 C -0.159 4.159 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.032 0.968 36 H 0.038 0.962 37 H 0.264 0.736 38 H 0.402 0.598 39 H 0.148 0.852 40 H 0.124 0.876 41 H 0.043 0.957 42 H 0.089 0.911 43 H 0.347 0.653 44 H 0.085 0.915 45 H 0.040 0.960 46 H 0.059 0.941 47 H 0.097 0.903 48 H 0.124 0.876 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.656 -17.353 -15.750 25.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.193 4.193 3 C 0.013 3.987 4 N -0.332 5.332 5 C 0.111 3.889 6 C -0.568 4.568 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.404 3.596 15 O -0.441 6.441 16 N -0.345 5.345 17 C 0.088 3.912 18 C -0.140 4.140 19 C -0.105 4.105 20 C -0.118 4.118 21 C 0.084 3.916 22 H 0.091 0.909 23 C -0.099 4.099 24 N -0.322 5.322 25 C -0.112 4.112 26 C -0.015 4.015 27 O -0.295 6.295 28 C -0.093 4.093 29 C -0.180 4.180 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.239 0.761 39 H 0.166 0.834 40 H 0.142 0.858 41 H 0.061 0.939 42 H 0.107 0.893 43 H 0.165 0.835 44 H 0.103 0.897 45 H 0.058 0.942 46 H 0.077 0.923 47 H 0.115 0.885 48 H 0.142 0.858 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.042 -17.245 -14.184 24.909 hybrid contribution -0.871 -0.218 -0.551 1.054 sum 10.170 -17.462 -14.735 25.010 Atomic orbital electron populations 1.23852 0.95802 1.01916 1.00092 1.23468 0.96525 0.98993 1.00302 1.20559 0.93202 0.95743 0.89206 1.47213 1.09065 1.63260 1.13629 1.19612 0.94787 0.94988 0.79479 1.21335 1.41213 0.91144 1.03091 0.90731 1.24836 0.95283 0.94721 0.98098 1.69895 1.47764 1.06590 1.29268 0.86871 0.79893 0.79652 0.83400 1.19860 1.21081 1.19040 1.15879 0.82993 0.78452 0.82301 1.90894 1.52502 1.61255 1.39453 1.42951 1.15828 1.63548 1.12143 1.17629 0.84220 0.92347 0.97028 1.21431 0.90556 1.01495 1.00548 1.20819 0.97103 0.95468 0.97116 1.19355 0.93968 0.98232 1.00258 1.20800 0.93148 0.80599 0.97011 0.90852 1.22629 0.89556 0.99602 0.98071 1.60569 1.19194 1.03376 1.49040 1.22650 1.01031 0.89333 0.98138 1.22640 0.85538 0.96530 0.96807 1.88033 1.29014 1.19280 1.93188 1.20604 0.91432 0.98676 0.98563 1.20834 0.97986 0.96061 1.03086 0.88128 0.88663 0.87671 0.88744 0.91191 0.95011 0.94392 0.92559 0.76093 0.83420 0.85803 0.93914 0.89270 0.83545 0.89696 0.94218 0.92292 0.88470 0.85818 0.85997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 14.32 29.02 0.42 -1.69 16 2 C -0.17 -2.27 9.85 -36.02 -0.35 -2.62 16 3 C 0.14 2.09 5.65 -5.19 -0.03 2.06 16 4 N -0.60 -12.13 2.44 -182.18 -0.44 -12.57 16 5 C 0.23 5.63 4.23 -5.19 -0.02 5.60 16 6 C -0.53 -15.01 9.94 -34.44 -0.34 -15.35 16 7 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 8 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 9 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 10 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 16 11 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 14 C 0.70 14.46 8.12 -86.92 -0.71 13.76 16 15 O -0.57 -13.92 13.36 5.29 0.07 -13.85 16 16 N -0.70 -11.03 5.22 -14.22 -0.07 -11.11 16 17 C 0.18 2.85 6.30 -83.68 -0.53 2.32 16 18 C -0.12 -1.98 8.70 -39.40 -0.34 -2.33 16 19 C -0.09 -1.19 9.67 -39.61 -0.38 -1.57 16 20 C -0.12 -1.46 5.01 -104.59 -0.52 -1.98 16 21 C 0.14 1.55 3.01 -27.83 -0.08 1.47 16 22 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 23 C 0.03 0.28 6.03 -3.71 -0.02 0.26 16 24 N -0.69 -5.40 6.92 -113.42 -0.79 -6.19 16 25 C 0.02 0.13 6.77 -3.66 -0.02 0.10 16 26 C 0.06 0.50 7.01 37.21 0.26 0.76 16 27 O -0.38 -4.23 9.62 -35.23 -0.34 -4.57 16 28 C -0.07 -0.91 9.34 -39.61 -0.37 -1.28 16 29 C -0.16 -2.02 9.97 -39.39 -0.39 -2.41 16 30 H 0.10 1.16 7.84 -52.49 -0.41 0.75 16 31 H 0.10 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 33 H 0.09 1.50 7.72 -51.93 -0.40 1.10 16 34 H 0.07 0.88 6.30 -51.93 -0.33 0.55 16 35 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 36 H 0.04 0.99 6.85 -51.93 -0.36 0.64 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.40 5.07 6.52 -40.82 -0.27 4.80 16 39 H 0.15 2.88 6.22 -52.49 -0.33 2.55 16 40 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 41 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.35 2.07 8.90 -39.29 -0.35 1.72 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.12 1.36 7.63 -52.48 -0.40 0.96 16 49 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 399.73 15.07 6.02 6.02 Total: -1.00 -34.47 399.73 -10.43 -44.91 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -7.44 Total: 8.09 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -3.55 Total: -0.89 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.53 Total: -56.57 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.27 Total: -18.42 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.47 -10.43 -44.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595245129.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.626 kcal (2) G-P(sol) polarization free energy of solvation -34.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds