Wall clock time and date at job start Wed Apr 1 2020 03:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00208 * 2 1 4 4 N 1.46497 * 109.46999 * 125.00184 * 3 2 1 5 5 C 1.46502 * 119.99950 * 270.00233 * 4 3 2 6 6 C 1.50700 * 109.47157 * 270.00011 * 5 4 3 7 7 H 1.07991 * 119.99782 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99963 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99824 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00129 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47004 * 90.00177 * 10 8 6 12 12 H 1.48495 * 109.47276 * 210.00172 * 10 8 6 13 13 H 1.48505 * 109.46997 * 330.00363 * 10 8 6 14 14 C 1.34776 * 120.00138 * 90.00232 * 4 3 2 15 15 O 1.21590 * 120.00252 * 179.97438 * 14 4 3 16 16 N 1.34772 * 119.99828 * 359.97438 * 14 4 3 17 17 C 1.39954 * 120.00090 * 184.58858 * 16 14 4 18 18 C 1.38864 * 120.06756 * 324.91581 * 17 16 14 19 19 C 1.38113 * 119.92678 * 180.02562 * 18 17 16 20 20 C 1.38285 * 120.07159 * 0.02562 * 19 18 17 21 21 C 1.50700 * 119.93098 * 179.97438 * 20 19 18 22 22 H 1.09004 * 109.50802 * 24.91014 * 21 20 19 23 23 C 1.53105 * 109.50443 * 264.78111 * 21 20 19 24 24 N 1.47016 * 109.25362 * 183.21629 * 23 21 20 25 25 C 1.47112 * 110.77652 * 58.61781 * 24 23 21 26 26 C 1.53099 * 109.20788 * 301.40742 * 25 24 23 27 27 O 1.43013 * 109.29544 * 56.82998 * 26 25 24 28 28 C 1.38276 * 120.13588 * 0.22919 * 20 19 18 29 29 C 1.38109 * 120.07648 * 359.49117 * 28 20 19 30 30 H 1.07994 * 120.00001 * 359.97438 * 1 2 3 31 31 H 1.08002 * 120.00254 * 179.97438 * 1 2 3 32 32 H 1.08004 * 120.00042 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.46709 * 5.00582 * 3 2 1 34 34 H 1.08999 * 109.47155 * 245.00295 * 3 2 1 35 35 H 1.09005 * 109.47272 * 30.00495 * 5 4 3 36 36 H 1.09005 * 109.47067 * 149.99720 * 5 4 3 37 37 H 0.96997 * 119.99791 * 179.97438 * 9 8 6 38 38 H 0.97005 * 120.00501 * 4.59537 * 16 14 4 39 39 H 1.07999 * 120.03884 * 0.04245 * 18 17 16 40 40 H 1.07999 * 119.96842 * 179.97438 * 19 18 17 41 41 H 1.08996 * 109.50453 * 303.15164 * 23 21 20 42 42 H 1.08997 * 109.50618 * 63.28095 * 23 21 20 43 43 H 1.00897 * 110.99632 * 182.38781 * 24 23 21 44 44 H 1.08999 * 109.56120 * 181.46446 * 25 24 23 45 45 H 1.09003 * 109.49582 * 61.30680 * 25 24 23 46 46 H 1.08999 * 109.50595 * 296.87631 * 26 25 24 47 47 H 1.08992 * 109.50456 * 176.78711 * 26 25 24 48 48 H 1.08010 * 119.96452 * 179.72432 * 28 20 19 49 49 H 1.07994 * 120.04158 * 180.25079 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8648 2.4249 6 6 2.8443 3.3435 2.4805 7 1 3.3033 3.8369 1.6366 8 6 2.5194 4.0663 3.6088 9 7 2.7681 5.3568 3.6571 10 14 1.7249 3.2129 5.0682 11 1 2.7809 2.7217 5.9894 12 1 0.8489 4.1731 5.7863 13 1 0.9132 2.0654 4.5888 14 6 4.2497 0.8661 0.9823 15 8 5.0220 0.8886 1.9212 16 7 4.6496 0.3753 -0.2074 17 6 5.9206 -0.1961 -0.3373 18 6 6.9917 0.3192 0.3809 19 6 8.2448 -0.2466 0.2502 20 6 8.4336 -1.3246 -0.5951 21 6 9.8025 -1.9391 -0.7358 22 1 10.3855 -1.7389 0.1632 23 6 10.5115 -1.3352 -1.9510 24 7 11.8142 -1.9930 -2.1286 25 6 11.6460 -3.4429 -2.3121 26 6 10.9251 -4.0246 -1.0932 27 8 9.6753 -3.3519 -0.9178 28 6 7.3702 -1.8365 -1.3155 29 6 6.1134 -1.2790 -1.1849 30 1 -0.5400 0.9353 0.0004 31 1 -0.5401 -0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3586 2.1316 0.0897 34 1 2.6213 1.4026 -0.9314 35 1 1.4888 1.6964 2.5460 36 1 3.0990 1.3600 3.2260 37 1 2.5392 5.8654 4.4507 38 1 4.0566 0.4181 -0.9739 39 1 6.8449 1.1612 1.0411 40 1 9.0783 0.1539 0.8080 41 1 9.9018 -1.4885 -2.8414 42 1 10.6616 -0.2675 -1.7913 43 1 12.3217 -1.5875 -2.9007 44 1 12.6236 -3.9135 -2.4158 45 1 11.0544 -3.6299 -3.2084 46 1 11.5413 -3.8850 -0.2050 47 1 10.7470 -5.0885 -1.2492 48 1 7.5217 -2.6758 -1.9783 49 1 5.2824 -1.6819 -1.7448 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595245129.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:11 Heat of formation + Delta-G solvation = -26.457295 kcal Electronic energy + Delta-G solvation = -29813.506007 eV Core-core repulsion = 25740.823431 eV Total energy + Delta-G solvation = -4072.682576 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.80987 -40.77757 -39.43379 -37.38688 -36.09682 -35.55990 -34.95689 -33.83990 -32.93770 -31.89099 -30.52486 -29.40104 -27.23226 -26.86197 -25.25746 -24.38188 -23.88178 -22.49797 -21.50534 -21.19673 -20.60280 -19.33453 -19.06731 -18.43305 -18.13914 -17.30929 -16.90687 -16.61558 -16.52418 -15.97693 -15.90239 -15.72750 -15.42297 -15.33698 -15.13077 -15.11263 -14.95407 -14.58316 -14.33965 -14.18926 -14.07589 -13.68738 -13.54248 -13.21004 -13.01926 -12.87358 -12.52724 -12.42463 -12.30787 -12.30279 -12.20304 -11.95958 -11.74149 -11.53583 -11.37891 -10.99432 -10.82634 -10.67192 -10.36718 -9.86603 -9.60447 -9.51362 -8.94727 -8.33503 -6.38271 0.25224 0.47770 1.22426 1.33598 1.37231 1.45325 1.79421 2.11671 2.31090 2.66683 2.89012 2.96450 3.02337 3.15981 3.84003 3.89929 3.94810 3.99938 4.03842 4.12577 4.15450 4.17806 4.32148 4.32772 4.42225 4.49414 4.52655 4.64666 4.67790 4.71581 4.81788 4.82791 4.86918 4.91698 4.97745 5.04796 5.10532 5.29121 5.35023 5.44588 5.50005 5.57676 5.62517 5.69717 5.81761 5.87944 5.97972 6.07818 6.21682 6.26476 6.33505 6.62719 6.95813 7.23201 7.56077 8.83353 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016047 B = 0.002300 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.437630 B =12171.974860 C =13208.415356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.186 4.186 3 C 0.132 3.868 4 N -0.605 5.605 5 C 0.244 3.756 6 C -0.534 4.534 7 H 0.029 0.971 8 C 0.013 3.987 9 N -0.944 5.944 10 Si 0.945 3.055 11 H -0.278 1.278 12 H -0.274 1.274 13 H -0.238 1.238 14 C 0.696 3.304 15 O -0.616 6.616 16 N -0.676 5.676 17 C 0.159 3.841 18 C -0.146 4.146 19 C -0.091 4.091 20 C -0.109 4.109 21 C 0.144 3.856 22 H 0.067 0.933 23 C 0.037 3.963 24 N -0.696 5.696 25 C 0.020 3.980 26 C 0.055 3.945 27 O -0.394 6.394 28 C -0.071 4.071 29 C -0.142 4.142 30 H 0.102 0.898 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.052 0.948 36 H 0.018 0.982 37 H 0.268 0.732 38 H 0.419 0.581 39 H 0.107 0.893 40 H 0.133 0.867 41 H 0.043 0.957 42 H 0.090 0.910 43 H 0.358 0.642 44 H 0.105 0.895 45 H 0.042 0.958 46 H 0.055 0.945 47 H 0.117 0.883 48 H 0.146 0.854 49 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.047 -20.650 -17.398 28.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.206 4.206 3 C 0.010 3.990 4 N -0.338 5.338 5 C 0.122 3.878 6 C -0.573 4.573 7 H 0.047 0.953 8 C -0.186 4.186 9 N -0.584 5.584 10 Si 0.768 3.232 11 H -0.204 1.204 12 H -0.199 1.199 13 H -0.161 1.161 14 C 0.398 3.602 15 O -0.495 6.495 16 N -0.326 5.326 17 C 0.063 3.937 18 C -0.166 4.166 19 C -0.109 4.109 20 C -0.110 4.110 21 C 0.086 3.914 22 H 0.085 0.915 23 C -0.093 4.093 24 N -0.330 5.330 25 C -0.109 4.109 26 C -0.022 4.022 27 O -0.313 6.313 28 C -0.089 4.089 29 C -0.163 4.163 30 H 0.120 0.880 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.069 0.931 36 H 0.036 0.964 37 H 0.077 0.923 38 H 0.259 0.741 39 H 0.125 0.875 40 H 0.151 0.849 41 H 0.061 0.939 42 H 0.108 0.892 43 H 0.178 0.822 44 H 0.124 0.876 45 H 0.060 0.940 46 H 0.074 0.926 47 H 0.135 0.865 48 H 0.163 0.837 49 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 10.423 -20.571 -15.928 28.027 hybrid contribution -0.553 0.792 -0.156 0.979 sum 9.870 -19.779 -16.084 27.337 Atomic orbital electron populations 1.24088 0.95346 1.03114 0.97422 1.23270 0.96864 0.97794 1.02636 1.20807 0.92732 0.97068 0.88369 1.47158 1.09942 1.62954 1.13747 1.19223 0.95362 0.91941 0.81284 1.21546 1.40498 0.93414 1.01803 0.95269 1.25807 0.95976 0.95350 1.01423 1.70046 1.49422 1.08457 1.30495 0.85755 0.79070 0.79406 0.78963 1.20357 1.19919 1.16086 1.16098 0.82642 0.78404 0.83049 1.90861 1.53864 1.63246 1.41557 1.42602 1.16295 1.62709 1.11020 1.17834 0.83469 0.93860 0.98494 1.21236 0.92544 1.01501 1.01348 1.20884 0.96347 0.95995 0.97694 1.19571 0.95256 0.97203 0.99017 1.20727 0.91995 0.80987 0.97728 0.91492 1.22493 0.90122 0.99612 0.97050 1.60548 1.18468 1.04036 1.49901 1.22683 1.02043 0.88699 0.97484 1.22883 0.84568 0.97431 0.97306 1.87986 1.30866 1.19113 1.93367 1.20896 0.90951 0.98805 0.98283 1.21086 0.99212 0.94326 1.01629 0.88005 0.86359 0.86867 0.89703 0.88738 0.93055 0.96355 0.92284 0.74132 0.87480 0.84893 0.93875 0.89206 0.82232 0.87649 0.93981 0.92635 0.86494 0.83675 0.82820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 14.32 67.78 0.97 -2.35 16 2 C -0.19 -4.45 9.85 25.65 0.25 -4.20 16 3 C 0.13 3.94 5.65 85.63 0.48 4.42 16 4 N -0.60 -24.94 2.44 -848.56 -2.07 -27.01 16 5 C 0.24 12.04 4.23 85.63 0.36 12.40 16 6 C -0.53 -31.56 9.94 25.60 0.25 -31.31 16 7 H 0.03 1.93 8.06 -2.92 -0.02 1.91 16 8 C 0.01 0.74 5.47 84.66 0.46 1.21 16 9 N -0.94 -59.96 13.96 21.45 0.30 -59.66 16 10 Si 0.95 44.81 27.47 68.60 1.88 46.69 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 13 H -0.24 -10.12 6.54 99.48 0.65 -9.46 16 14 C 0.70 29.68 8.12 179.06 1.45 31.14 16 15 O -0.62 -32.17 13.36 -4.00 -0.05 -32.22 16 16 N -0.68 -21.52 5.22 -317.17 -1.65 -23.18 16 17 C 0.16 4.93 6.30 38.15 0.24 5.17 16 18 C -0.15 -5.10 8.70 22.39 0.19 -4.91 16 19 C -0.09 -2.57 9.67 22.25 0.22 -2.35 16 20 C -0.11 -2.63 5.01 -19.84 -0.10 -2.73 16 21 C 0.14 2.94 3.01 29.88 0.09 3.03 16 22 H 0.07 1.45 8.05 -2.38 -0.02 1.43 16 23 C 0.04 0.61 6.03 86.32 0.52 1.13 16 24 N -0.70 -9.44 6.92 -512.74 -3.55 -12.99 16 25 C 0.02 0.23 6.77 86.30 0.58 0.81 16 26 C 0.05 0.76 7.01 72.02 0.50 1.27 16 27 O -0.39 -8.07 9.62 -148.98 -1.43 -9.50 16 28 C -0.07 -1.58 9.34 22.25 0.21 -1.37 16 29 C -0.14 -3.31 9.97 22.39 0.22 -3.09 16 30 H 0.10 2.07 7.84 -2.91 -0.02 2.05 16 31 H 0.12 1.92 8.06 -2.91 -0.02 1.89 16 32 H 0.11 2.55 8.06 -2.91 -0.02 2.53 16 33 H 0.08 2.67 7.72 -2.39 -0.02 2.66 16 34 H 0.09 2.26 6.30 -2.39 -0.02 2.25 16 35 H 0.05 2.33 7.13 -2.38 -0.02 2.31 16 36 H 0.02 0.98 6.85 -2.38 -0.02 0.96 16 37 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 38 H 0.42 10.07 6.52 -92.70 -0.60 9.47 16 39 H 0.11 4.63 6.22 -2.91 -0.02 4.61 16 40 H 0.13 3.36 8.06 -2.91 -0.02 3.33 16 41 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.36 3.48 8.90 -89.70 -0.80 2.68 16 44 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.15 2.68 7.63 -2.91 -0.02 2.65 16 49 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -79.67 399.73 -0.15 -79.82 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: -0.49 Total: 29.77 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 6.92 Total: 8.28 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -6.98 Total: -122.84 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -1.49 Total: -41.73 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.69 kcal Total: -79.67 -0.15 -79.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595245129.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.361 kcal (2) G-P(sol) polarization free energy of solvation -79.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds