Wall clock time and date at job start Wed Apr 1 2020 03:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50707 * 119.99381 * 2 1 4 4 N 1.46493 * 109.47338 * 125.00233 * 3 2 1 5 5 C 1.46497 * 119.99836 * 269.99767 * 4 3 2 6 6 C 1.50701 * 109.47328 * 269.99731 * 5 4 3 7 7 H 1.08001 * 119.99784 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00704 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99349 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00590 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46548 * 0.02562 * 10 8 6 12 12 H 1.48492 * 109.47065 * 119.99806 * 10 8 6 13 13 H 1.48497 * 109.47368 * 240.00289 * 10 8 6 14 14 C 1.34775 * 120.00388 * 89.99400 * 4 3 2 15 15 O 1.21582 * 120.00474 * 180.02562 * 14 4 3 16 16 N 1.34785 * 119.99854 * 0.02562 * 14 4 3 17 17 C 1.39944 * 119.99888 * 184.59443 * 16 14 4 18 18 C 1.38863 * 120.07315 * 324.90877 * 17 16 14 19 19 C 1.38111 * 119.93465 * 179.97438 * 18 17 16 20 20 C 1.38284 * 120.06534 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.92800 * 179.97438 * 20 19 18 22 22 H 1.08998 * 109.50857 * 340.08783 * 21 20 19 23 23 C 1.53097 * 109.54131 * 100.19415 * 21 20 19 24 24 N 1.47020 * 109.25895 * 176.80496 * 23 21 20 25 25 C 1.47013 * 110.75269 * 301.38553 * 24 23 21 26 26 C 1.53100 * 109.25728 * 58.61305 * 25 24 23 27 27 O 1.43009 * 109.25877 * 303.15209 * 26 25 24 28 28 C 1.38279 * 120.14099 * 0.23304 * 20 19 18 29 29 C 1.38113 * 120.07075 * 359.48606 * 28 20 19 30 30 H 1.07998 * 120.00350 * 0.02562 * 1 2 3 31 31 H 1.07997 * 119.99390 * 180.02562 * 1 2 3 32 32 H 1.07993 * 120.00759 * 179.97438 * 2 1 3 33 33 H 1.08993 * 109.47229 * 4.99213 * 3 2 1 34 34 H 1.09010 * 109.46513 * 245.00180 * 3 2 1 35 35 H 1.09003 * 109.47414 * 29.99563 * 5 4 3 36 36 H 1.08999 * 109.47014 * 149.99834 * 5 4 3 37 37 H 0.97001 * 119.99486 * 180.02562 * 9 8 6 38 38 H 0.97001 * 119.99850 * 4.58884 * 16 14 4 39 39 H 1.08000 * 120.02865 * 359.95732 * 18 17 16 40 40 H 1.07994 * 119.96831 * 180.02562 * 19 18 17 41 41 H 1.08995 * 109.51256 * 296.73848 * 23 21 20 42 42 H 1.09005 * 109.51073 * 56.82882 * 23 21 20 43 43 H 1.00902 * 110.99562 * 65.16016 * 24 23 21 44 44 H 1.09002 * 109.50447 * 178.54786 * 25 24 23 45 45 H 1.09000 * 109.50743 * 298.63682 * 25 24 23 46 46 H 1.09003 * 109.50389 * 183.21566 * 26 25 24 47 47 H 1.08997 * 109.50575 * 63.08609 * 26 25 24 48 48 H 1.08008 * 119.96313 * 179.72619 * 28 20 19 49 49 H 1.07995 * 120.03397 * 180.22909 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3322 1.1313 5 6 2.5588 1.8652 2.4247 6 6 2.8441 3.3439 2.4803 7 1 3.3038 3.8372 1.6366 8 6 2.5182 4.0671 3.6080 9 7 1.9588 3.4662 4.6355 10 14 2.8712 5.9002 3.6765 11 1 3.4991 6.3312 2.4016 12 1 1.6005 6.6417 3.8775 13 1 3.7942 6.1847 4.8045 14 6 4.2497 0.8665 0.9824 15 8 5.0216 0.8884 1.9214 16 7 4.6500 0.3765 -0.2077 17 6 5.9209 -0.1948 -0.3375 18 6 6.9918 0.3198 0.3813 19 6 8.2447 -0.2466 0.2515 20 6 8.4334 -1.3248 -0.5936 21 6 9.8020 -1.9401 -0.7333 22 1 10.5570 -1.2277 -0.4008 23 6 9.8834 -3.2075 0.1217 24 7 11.1934 -3.8441 -0.0784 25 6 11.3994 -4.1778 -1.4952 26 6 11.3028 -2.9007 -2.3340 27 8 10.0356 -2.2793 -2.1028 28 6 7.3702 -1.8362 -1.3147 29 6 6.1136 -1.2779 -1.1849 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5399 -0.9353 0.0004 32 1 1.8501 -0.9352 0.0004 33 1 1.3585 2.1317 0.0894 34 1 2.6212 1.4027 -0.9315 35 1 1.4887 1.6969 2.5458 36 1 3.0989 1.3606 3.2258 37 1 1.7292 3.9751 5.4288 38 1 4.0571 0.4198 -0.9743 39 1 6.8451 1.1623 1.0409 40 1 9.0779 0.1529 0.8105 41 1 9.7627 -2.9459 1.1729 42 1 9.0935 -3.8978 -0.1745 43 1 11.9374 -3.2564 0.2666 44 1 12.3853 -4.6244 -1.6243 45 1 10.6347 -4.8845 -1.8177 46 1 11.3980 -3.1511 -3.3906 47 1 12.1014 -2.2162 -2.0481 48 1 7.5217 -2.6756 -1.9773 49 1 5.2829 -1.6802 -1.7456 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595245130.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:16 Heat of formation + Delta-G solvation = -7.905336 kcal Electronic energy + Delta-G solvation = -29804.917805 eV Core-core repulsion = 25733.039702 eV Total energy + Delta-G solvation = -4071.878103 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.50490 -39.91036 -38.33445 -35.86431 -34.86031 -34.62378 -33.17428 -32.33958 -31.82103 -30.80127 -29.01053 -27.47645 -26.07531 -25.44656 -24.25521 -23.12429 -22.72924 -21.68470 -20.90068 -20.08342 -19.27643 -17.92563 -17.07531 -16.88683 -16.56040 -16.41727 -15.95022 -15.74880 -15.18772 -15.18332 -14.95771 -14.58491 -14.32670 -14.17287 -13.90700 -13.49662 -13.29455 -13.20034 -12.94833 -12.76351 -12.56472 -12.34735 -12.13502 -11.84478 -11.74211 -11.47746 -11.37035 -11.31852 -11.12375 -11.09462 -10.89832 -10.62925 -10.44428 -10.20642 -10.02776 -9.66539 -9.28002 -9.24921 -8.75906 -8.68391 -8.45000 -7.94633 -7.59720 -6.05641 -4.10394 1.36596 1.58406 2.37195 3.22255 3.28654 3.36504 3.37923 3.40917 3.68707 3.79940 4.04460 4.35939 4.43266 4.50002 4.58849 4.73298 4.75113 4.87930 4.97697 5.03425 5.14353 5.16224 5.26338 5.27858 5.28529 5.34008 5.46582 5.49669 5.51604 5.70487 5.75382 5.83434 5.93741 6.10319 6.15952 6.33749 6.45381 6.48083 6.62892 6.73577 6.77869 6.80671 6.86449 6.90279 6.91043 7.28176 7.34817 7.48397 7.64629 7.92192 8.21165 8.53340 8.90557 9.19840 9.55008 11.02280 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014569 B = 0.002319 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.466743 B =12071.218735 C =13315.204871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.172 4.172 3 C 0.137 3.863 4 N -0.602 5.602 5 C 0.261 3.739 6 C -0.526 4.526 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.699 3.301 15 O -0.566 6.566 16 N -0.697 5.697 17 C 0.186 3.814 18 C -0.120 4.120 19 C -0.088 4.088 20 C -0.114 4.114 21 C 0.103 3.897 22 H 0.063 0.937 23 C 0.031 3.969 24 N -0.684 5.684 25 C 0.019 3.981 26 C 0.021 3.979 27 O -0.371 6.371 28 C -0.073 4.073 29 C -0.158 4.158 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.035 0.965 36 H 0.045 0.955 37 H 0.263 0.737 38 H 0.402 0.598 39 H 0.147 0.853 40 H 0.121 0.879 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.341 0.659 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.099 0.901 47 H 0.049 0.951 48 H 0.124 0.876 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.313 -13.527 -15.762 24.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.192 4.192 3 C 0.013 3.987 4 N -0.336 5.336 5 C 0.142 3.858 6 C -0.565 4.565 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.401 3.599 15 O -0.442 6.442 16 N -0.347 5.347 17 C 0.089 3.911 18 C -0.141 4.141 19 C -0.107 4.107 20 C -0.116 4.116 21 C 0.043 3.957 22 H 0.081 0.919 23 C -0.099 4.099 24 N -0.312 5.312 25 C -0.111 4.111 26 C -0.057 4.057 27 O -0.290 6.290 28 C -0.092 4.092 29 C -0.180 4.180 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.122 0.878 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.238 0.762 39 H 0.165 0.835 40 H 0.139 0.861 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.158 0.842 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.117 0.883 47 H 0.068 0.932 48 H 0.142 0.858 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 12.342 -14.025 -14.757 23.808 hybrid contribution 0.095 1.861 -0.494 1.928 sum 12.437 -12.164 -15.251 23.136 Atomic orbital electron populations 1.23828 0.95797 1.01837 1.00144 1.23444 0.96511 0.98945 1.00263 1.20534 0.93200 0.95727 0.89253 1.47594 1.08765 1.63023 1.14229 1.19247 0.95295 0.93601 0.77644 1.21482 1.40420 0.93342 1.01273 0.92419 1.24928 0.95088 0.98746 0.95330 1.69949 1.42085 1.36055 1.05187 0.86449 0.77899 0.84981 0.78122 1.19841 1.20994 1.20870 1.15944 0.83237 0.78581 0.82155 1.90887 1.52637 1.61320 1.39354 1.43022 1.15732 1.63640 1.12265 1.17631 0.84310 0.92211 0.96905 1.21414 0.90583 1.01457 1.00599 1.20799 0.97169 0.94892 0.97838 1.19261 0.93454 0.98307 1.00579 1.21513 0.94955 0.95938 0.83255 0.91885 1.22734 0.92042 0.94344 1.00741 1.60877 1.04371 1.48659 1.17283 1.22692 1.03300 0.97275 0.87818 1.23286 0.86258 0.94554 1.01617 1.88113 1.35833 1.79648 1.25430 1.20592 0.91282 0.99325 0.98028 1.20847 0.97979 0.96103 1.03030 0.88204 0.88719 0.87769 0.88983 0.91553 0.94729 0.93696 0.92760 0.76168 0.83513 0.86065 0.89147 0.89573 0.84173 0.89664 0.89808 0.88308 0.93246 0.85837 0.85957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 14.32 29.01 0.42 -1.82 16 2 C -0.17 -2.38 9.85 -36.02 -0.35 -2.73 16 3 C 0.14 2.15 5.65 -5.19 -0.03 2.12 16 4 N -0.60 -12.55 2.44 -182.19 -0.44 -12.99 16 5 C 0.26 6.75 5.16 -5.19 -0.03 6.72 16 6 C -0.53 -14.71 9.39 -34.44 -0.32 -15.03 16 7 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 10 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.70 14.65 8.12 -86.91 -0.71 13.94 16 15 O -0.57 -14.16 13.36 5.29 0.07 -14.09 16 16 N -0.70 -11.24 5.22 -14.22 -0.07 -11.31 16 17 C 0.19 2.90 6.30 -83.69 -0.53 2.38 16 18 C -0.12 -1.99 8.69 -39.40 -0.34 -2.33 16 19 C -0.09 -1.20 9.66 -39.61 -0.38 -1.58 16 20 C -0.11 -1.41 4.98 -104.59 -0.52 -1.93 16 21 C 0.10 1.04 3.00 -27.83 -0.08 0.96 16 22 H 0.06 0.60 8.00 -51.93 -0.42 0.19 16 23 C 0.03 0.29 6.03 -3.71 -0.02 0.27 16 24 N -0.68 -5.47 6.93 -113.49 -0.79 -6.25 16 25 C 0.02 0.13 6.76 -3.71 -0.03 0.10 16 26 C 0.02 0.15 7.00 37.21 0.26 0.42 16 27 O -0.37 -3.92 9.78 -35.23 -0.34 -4.27 16 28 C -0.07 -0.90 9.35 -39.61 -0.37 -1.27 16 29 C -0.16 -2.04 9.97 -39.39 -0.39 -2.43 16 30 H 0.10 1.23 7.84 -52.49 -0.41 0.81 16 31 H 0.09 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.10 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.09 1.50 7.72 -51.93 -0.40 1.10 16 34 H 0.07 0.85 6.30 -51.92 -0.33 0.52 16 35 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 36 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.40 5.20 6.52 -40.82 -0.27 4.93 16 39 H 0.15 2.84 6.23 -52.49 -0.33 2.52 16 40 H 0.12 1.41 8.03 -52.49 -0.42 0.99 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.34 2.25 8.89 -39.29 -0.35 1.91 16 44 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.12 1.34 7.77 -52.48 -0.41 0.94 16 49 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 403.49 15.07 6.08 6.08 Total: -1.00 -33.38 403.49 -10.79 -44.18 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -7.48 Total: 8.15 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -3.53 Total: -0.59 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -0.57 Total: -56.18 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.27 Total: -18.35 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.38 -10.79 -44.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595245130.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.272 kcal (2) G-P(sol) polarization free energy of solvation -33.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds