Wall clock time and date at job start Wed Apr 1 2020 03:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50707 * 119.99381 * 2 1 4 4 N 1.46493 * 109.47338 * 125.00233 * 3 2 1 5 5 C 1.46497 * 119.99836 * 269.99767 * 4 3 2 6 6 C 1.50701 * 109.47328 * 269.99731 * 5 4 3 7 7 H 1.08001 * 119.99784 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00704 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99349 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00590 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46548 * 0.02562 * 10 8 6 12 12 H 1.48492 * 109.47065 * 119.99806 * 10 8 6 13 13 H 1.48497 * 109.47368 * 240.00289 * 10 8 6 14 14 C 1.34775 * 120.00388 * 89.99400 * 4 3 2 15 15 O 1.21582 * 120.00474 * 180.02562 * 14 4 3 16 16 N 1.34785 * 119.99854 * 0.02562 * 14 4 3 17 17 C 1.39944 * 119.99888 * 184.59443 * 16 14 4 18 18 C 1.38863 * 120.07315 * 324.90877 * 17 16 14 19 19 C 1.38111 * 119.93465 * 179.97438 * 18 17 16 20 20 C 1.38284 * 120.06534 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.92800 * 179.97438 * 20 19 18 22 22 H 1.08998 * 109.50857 * 340.08783 * 21 20 19 23 23 C 1.53097 * 109.54131 * 100.19415 * 21 20 19 24 24 N 1.47020 * 109.25895 * 176.80496 * 23 21 20 25 25 C 1.47013 * 110.75269 * 301.38553 * 24 23 21 26 26 C 1.53100 * 109.25728 * 58.61305 * 25 24 23 27 27 O 1.43009 * 109.25877 * 303.15209 * 26 25 24 28 28 C 1.38279 * 120.14099 * 0.23304 * 20 19 18 29 29 C 1.38113 * 120.07075 * 359.48606 * 28 20 19 30 30 H 1.07998 * 120.00350 * 0.02562 * 1 2 3 31 31 H 1.07997 * 119.99390 * 180.02562 * 1 2 3 32 32 H 1.07993 * 120.00759 * 179.97438 * 2 1 3 33 33 H 1.08993 * 109.47229 * 4.99213 * 3 2 1 34 34 H 1.09010 * 109.46513 * 245.00180 * 3 2 1 35 35 H 1.09003 * 109.47414 * 29.99563 * 5 4 3 36 36 H 1.08999 * 109.47014 * 149.99834 * 5 4 3 37 37 H 0.97001 * 119.99486 * 180.02562 * 9 8 6 38 38 H 0.97001 * 119.99850 * 4.58884 * 16 14 4 39 39 H 1.08000 * 120.02865 * 359.95732 * 18 17 16 40 40 H 1.07994 * 119.96831 * 180.02562 * 19 18 17 41 41 H 1.08995 * 109.51256 * 296.73848 * 23 21 20 42 42 H 1.09005 * 109.51073 * 56.82882 * 23 21 20 43 43 H 1.00902 * 110.99562 * 65.16016 * 24 23 21 44 44 H 1.09002 * 109.50447 * 178.54786 * 25 24 23 45 45 H 1.09000 * 109.50743 * 298.63682 * 25 24 23 46 46 H 1.09003 * 109.50389 * 183.21566 * 26 25 24 47 47 H 1.08997 * 109.50575 * 63.08609 * 26 25 24 48 48 H 1.08008 * 119.96313 * 179.72619 * 28 20 19 49 49 H 1.07995 * 120.03397 * 180.22909 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3322 1.1313 5 6 2.5588 1.8652 2.4247 6 6 2.8441 3.3439 2.4803 7 1 3.3038 3.8372 1.6366 8 6 2.5182 4.0671 3.6080 9 7 1.9588 3.4662 4.6355 10 14 2.8712 5.9002 3.6765 11 1 3.4991 6.3312 2.4016 12 1 1.6005 6.6417 3.8775 13 1 3.7942 6.1847 4.8045 14 6 4.2497 0.8665 0.9824 15 8 5.0216 0.8884 1.9214 16 7 4.6500 0.3765 -0.2077 17 6 5.9209 -0.1948 -0.3375 18 6 6.9918 0.3198 0.3813 19 6 8.2447 -0.2466 0.2515 20 6 8.4334 -1.3248 -0.5936 21 6 9.8020 -1.9401 -0.7333 22 1 10.5570 -1.2277 -0.4008 23 6 9.8834 -3.2075 0.1217 24 7 11.1934 -3.8441 -0.0784 25 6 11.3994 -4.1778 -1.4952 26 6 11.3028 -2.9007 -2.3340 27 8 10.0356 -2.2793 -2.1028 28 6 7.3702 -1.8362 -1.3147 29 6 6.1136 -1.2779 -1.1849 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5399 -0.9353 0.0004 32 1 1.8501 -0.9352 0.0004 33 1 1.3585 2.1317 0.0894 34 1 2.6212 1.4027 -0.9315 35 1 1.4887 1.6969 2.5458 36 1 3.0989 1.3606 3.2258 37 1 1.7292 3.9751 5.4288 38 1 4.0571 0.4198 -0.9743 39 1 6.8451 1.1623 1.0409 40 1 9.0779 0.1529 0.8105 41 1 9.7627 -2.9459 1.1729 42 1 9.0935 -3.8978 -0.1745 43 1 11.9374 -3.2564 0.2666 44 1 12.3853 -4.6244 -1.6243 45 1 10.6347 -4.8845 -1.8177 46 1 11.3980 -3.1511 -3.3906 47 1 12.1014 -2.2162 -2.0481 48 1 7.5217 -2.6756 -1.9773 49 1 5.2829 -1.6802 -1.7456 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595245130.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:15 Heat of formation + Delta-G solvation = -30.276541 kcal Electronic energy + Delta-G solvation = -29805.887893 eV Core-core repulsion = 25733.039702 eV Total energy + Delta-G solvation = -4072.848191 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.78478 -40.88988 -39.47374 -37.34686 -36.07559 -35.47791 -35.00276 -33.77319 -32.91183 -31.88943 -30.19180 -29.12302 -27.08998 -26.69944 -25.35597 -24.52602 -23.97087 -22.59840 -21.89652 -21.30877 -20.62907 -19.33383 -18.59810 -18.38636 -17.72808 -17.27722 -16.96363 -16.66630 -16.60838 -16.35178 -16.04439 -15.83633 -15.72939 -15.20365 -15.14312 -14.91516 -14.50386 -14.25125 -14.23234 -14.07177 -13.68014 -13.59213 -13.31965 -13.11498 -13.02683 -12.87171 -12.61539 -12.50332 -12.28332 -12.26658 -12.20792 -12.10768 -12.04219 -11.67709 -11.34795 -11.14440 -10.91410 -10.64840 -10.35854 -9.85778 -9.65060 -9.36474 -8.84278 -8.21786 -6.36474 0.26367 0.48257 1.24386 1.35975 1.38348 1.49982 1.83057 2.14209 2.38454 2.63888 2.91825 3.01873 3.08372 3.20143 3.79027 3.82160 3.88985 3.99779 4.09633 4.11335 4.15960 4.18472 4.25488 4.31558 4.41093 4.47319 4.49693 4.61246 4.69614 4.76260 4.81171 4.92305 4.94607 5.03274 5.04281 5.09778 5.20151 5.28680 5.39927 5.50494 5.58227 5.61813 5.68655 5.74073 5.82725 5.90382 6.05849 6.07054 6.08773 6.17862 6.33500 6.72463 7.01976 7.30464 7.61191 8.84960 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014569 B = 0.002319 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.466743 B =12071.218735 C =13315.204871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.188 4.188 3 C 0.134 3.866 4 N -0.608 5.608 5 C 0.281 3.719 6 C -0.540 4.540 7 H 0.052 0.948 8 C 0.009 3.991 9 N -0.927 5.927 10 Si 0.966 3.034 11 H -0.269 1.269 12 H -0.269 1.269 13 H -0.282 1.282 14 C 0.695 3.305 15 O -0.617 6.617 16 N -0.676 5.676 17 C 0.158 3.842 18 C -0.146 4.146 19 C -0.092 4.092 20 C -0.107 4.107 21 C 0.107 3.893 22 H 0.070 0.930 23 C 0.037 3.963 24 N -0.689 5.689 25 C 0.021 3.979 26 C 0.018 3.982 27 O -0.390 6.390 28 C -0.072 4.072 29 C -0.144 4.144 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.027 0.973 36 H -0.002 1.002 37 H 0.267 0.733 38 H 0.418 0.582 39 H 0.108 0.892 40 H 0.135 0.865 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.349 0.651 44 H 0.106 0.894 45 H 0.077 0.923 46 H 0.115 0.885 47 H 0.058 0.942 48 H 0.145 0.855 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.084 -14.496 -18.274 26.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.207 4.207 3 C 0.011 3.989 4 N -0.341 5.341 5 C 0.160 3.840 6 C -0.579 4.579 7 H 0.070 0.930 8 C -0.190 4.190 9 N -0.567 5.567 10 Si 0.791 3.209 11 H -0.193 1.193 12 H -0.194 1.194 13 H -0.208 1.208 14 C 0.397 3.603 15 O -0.497 6.497 16 N -0.327 5.327 17 C 0.063 3.937 18 C -0.166 4.166 19 C -0.111 4.111 20 C -0.109 4.109 21 C 0.048 3.952 22 H 0.088 0.912 23 C -0.093 4.093 24 N -0.318 5.318 25 C -0.108 4.108 26 C -0.060 4.060 27 O -0.310 6.310 28 C -0.091 4.091 29 C -0.165 4.165 30 H 0.119 0.881 31 H 0.135 0.865 32 H 0.129 0.871 33 H 0.103 0.897 34 H 0.115 0.885 35 H 0.045 0.955 36 H 0.016 0.984 37 H 0.076 0.924 38 H 0.258 0.742 39 H 0.126 0.874 40 H 0.152 0.848 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.168 0.832 44 H 0.125 0.875 45 H 0.096 0.904 46 H 0.133 0.867 47 H 0.076 0.924 48 H 0.162 0.838 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 13.111 -15.021 -17.353 26.432 hybrid contribution -0.066 2.050 0.224 2.064 sum 13.045 -12.970 -17.129 25.136 Atomic orbital electron populations 1.24062 0.95416 1.03000 0.97658 1.23304 0.96910 0.98023 1.02442 1.20783 0.92763 0.96823 0.88484 1.47421 1.09768 1.62908 1.14016 1.18639 0.93862 0.92455 0.79077 1.21723 1.40394 0.94424 1.01340 0.92997 1.25820 0.94730 1.03602 0.94866 1.70060 1.42854 1.37970 1.05786 0.85387 0.78208 0.79237 0.78072 1.19302 1.19358 1.20822 1.16108 0.82755 0.78487 0.82941 1.90853 1.54014 1.63276 1.41509 1.42633 1.16279 1.62799 1.11009 1.17845 0.83549 0.93794 0.98521 1.21248 0.92556 1.01524 1.01299 1.20905 0.96446 0.95342 0.98363 1.19537 0.94967 0.97161 0.99186 1.21443 0.93636 0.96353 0.83755 0.91192 1.22601 0.92703 0.93700 1.00286 1.60874 1.03993 1.48582 1.18337 1.22732 1.04286 0.96977 0.86813 1.23484 0.85096 0.94651 1.02724 1.88066 1.37635 1.80132 1.25127 1.20894 0.90848 0.99492 0.97827 1.21090 0.99230 0.94474 1.01670 0.88066 0.86522 0.87126 0.89739 0.88472 0.95543 0.98374 0.92406 0.74235 0.87368 0.84764 0.89486 0.90420 0.83214 0.87544 0.90440 0.86711 0.92395 0.83761 0.83036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 14.32 67.78 0.97 -2.85 16 2 C -0.19 -4.97 9.85 25.64 0.25 -4.72 16 3 C 0.13 4.17 5.65 85.64 0.48 4.65 16 4 N -0.61 -26.25 2.44 -848.57 -2.07 -28.32 16 5 C 0.28 15.29 5.16 85.63 0.44 15.73 16 6 C -0.54 -31.26 9.39 25.60 0.24 -31.02 16 7 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 8 C 0.01 0.51 5.46 84.65 0.46 0.97 16 9 N -0.93 -56.18 13.29 21.45 0.28 -55.90 16 10 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 14 C 0.70 30.44 8.12 179.05 1.45 31.89 16 15 O -0.62 -33.06 13.36 -3.98 -0.05 -33.11 16 16 N -0.68 -21.99 5.22 -317.17 -1.65 -23.64 16 17 C 0.16 4.97 6.30 38.15 0.24 5.21 16 18 C -0.15 -5.06 8.69 22.39 0.19 -4.87 16 19 C -0.09 -2.54 9.66 22.25 0.21 -2.32 16 20 C -0.11 -2.51 4.98 -19.84 -0.10 -2.61 16 21 C 0.11 2.00 3.00 29.88 0.09 2.09 16 22 H 0.07 1.21 8.00 -2.39 -0.02 1.19 16 23 C 0.04 0.63 6.03 86.31 0.52 1.15 16 24 N -0.69 -9.59 6.93 -512.97 -3.55 -13.14 16 25 C 0.02 0.23 6.76 86.31 0.58 0.82 16 26 C 0.02 0.21 7.00 72.02 0.50 0.72 16 27 O -0.39 -7.30 9.78 -148.98 -1.46 -8.75 16 28 C -0.07 -1.61 9.35 22.25 0.21 -1.40 16 29 C -0.14 -3.44 9.97 22.39 0.22 -3.22 16 30 H 0.10 2.33 7.84 -2.91 -0.02 2.31 16 31 H 0.12 2.22 8.06 -2.91 -0.02 2.20 16 32 H 0.11 2.81 8.06 -2.91 -0.02 2.78 16 33 H 0.08 2.75 7.72 -2.39 -0.02 2.73 16 34 H 0.10 2.36 6.30 -2.38 -0.02 2.35 16 35 H 0.03 1.46 8.07 -2.39 -0.02 1.44 16 36 H 0.00 -0.12 7.42 -2.39 -0.02 -0.14 16 37 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 38 H 0.42 10.35 6.52 -92.71 -0.60 9.75 16 39 H 0.11 4.61 6.23 -2.91 -0.02 4.59 16 40 H 0.13 3.20 8.03 -2.91 -0.02 3.18 16 41 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.35 3.87 8.89 -89.69 -0.80 3.07 16 44 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.14 2.68 7.77 -2.91 -0.02 2.66 16 49 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -76.33 403.49 0.07 -76.25 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: -0.44 Total: 29.12 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 6.99 Total: 10.23 kcal Atomic # 7 Polarization: -114.01 SS G_CDS: -6.99 Total: -121.00 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: -1.51 Total: -41.87 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -76.33 0.07 -76.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595245130.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.978 kcal (2) G-P(sol) polarization free energy of solvation -76.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds