Wall clock time and date at job start Wed Apr 1 2020 03:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47600 * 2 1 4 4 N 1.46497 * 109.47260 * 239.99820 * 2 1 3 5 5 C 1.46493 * 120.00350 * 240.96465 * 4 2 1 6 6 C 1.50704 * 109.47230 * 89.99838 * 5 4 2 7 7 H 1.07991 * 119.99936 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99521 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00866 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99574 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47076 * 89.99851 * 10 8 6 12 12 H 1.48495 * 109.47265 * 210.00106 * 10 8 6 13 13 H 1.48504 * 109.47137 * 330.00164 * 10 8 6 14 14 C 1.34785 * 119.99766 * 60.96204 * 4 2 1 15 15 O 1.21280 * 119.99573 * 355.55830 * 14 4 2 16 16 C 1.50698 * 119.99781 * 175.56500 * 14 4 2 17 17 H 1.08999 * 110.85528 * 322.02404 * 16 14 4 18 18 C 1.54626 * 110.97510 * 85.81811 * 16 14 4 19 19 C 1.51280 * 104.19909 * 142.91406 * 18 16 14 20 20 O 1.21280 * 124.94227 * 163.78541 * 19 18 16 21 21 N 1.34422 * 110.11240 * 343.74588 * 19 18 16 22 22 C 1.46497 * 124.34474 * 179.56940 * 21 19 18 23 23 C 1.50707 * 109.47139 * 89.97942 * 22 21 19 24 24 C 1.38220 * 119.61857 * 94.72439 * 23 22 21 25 25 C 1.38628 * 119.16149 * 179.75891 * 24 23 22 26 26 C 1.38667 * 118.41885 * 0.50310 * 25 24 23 27 27 C 1.38185 * 119.16511 * 359.73885 * 26 25 24 28 28 N 1.31848 * 119.61634 * 274.99835 * 23 22 21 29 29 C 1.46761 * 111.30279 * 359.59473 * 21 19 18 30 30 H 1.09002 * 109.46993 * 53.35253 * 1 2 3 31 31 H 1.08996 * 109.47443 * 173.35646 * 1 2 3 32 32 H 1.09000 * 109.47089 * 293.35820 * 1 2 3 33 33 H 1.09005 * 109.47138 * 119.99845 * 2 1 3 34 34 H 1.09002 * 109.46797 * 65.55354 * 3 2 1 35 35 H 1.08997 * 109.47418 * 185.55754 * 3 2 1 36 36 H 1.09000 * 109.47039 * 305.56248 * 3 2 1 37 37 H 1.09002 * 109.47370 * 209.99594 * 5 4 2 38 38 H 1.09000 * 109.47528 * 329.99604 * 5 4 2 39 39 H 0.96993 * 120.00663 * 179.97438 * 9 8 6 40 40 H 1.09002 * 110.48365 * 261.59455 * 18 16 14 41 41 H 1.08998 * 110.48608 * 24.23202 * 18 16 14 42 42 H 1.09005 * 109.47351 * 209.97779 * 22 21 19 43 43 H 1.08997 * 109.47771 * 329.97551 * 22 21 19 44 44 H 1.08009 * 120.42116 * 359.97438 * 24 23 22 45 45 H 1.08000 * 120.78962 * 180.26534 * 25 24 23 46 46 H 1.08003 * 120.41877 * 179.75587 * 26 25 24 47 47 H 1.08000 * 119.61908 * 179.97438 * 27 26 25 48 48 H 1.08998 * 110.24200 * 258.01460 * 29 21 19 49 49 H 1.09002 * 110.24681 * 136.01758 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.8430 -1.8939 -1.0618 6 6 1.9546 -3.1108 -1.0296 7 1 0.8829 -2.9990 -1.1014 8 6 2.5102 -4.3668 -0.9072 9 7 3.8153 -4.5030 -0.8192 10 14 1.4089 -5.8752 -0.8665 11 1 1.2008 -6.3736 -2.2498 12 1 2.0519 -6.9356 -0.0497 13 1 0.0985 -5.5153 -0.2676 14 6 1.7088 -0.2189 -2.4202 15 8 0.9605 0.7288 -2.5334 16 6 2.2923 -0.8693 -3.6480 17 1 3.3249 -1.1714 -3.4735 18 6 1.4323 -2.0728 -4.0986 19 6 1.4791 -2.0172 -5.6096 20 8 1.1711 -2.9286 -6.3481 21 7 1.9108 -0.8104 -6.0147 22 6 2.0824 -0.4217 -7.4167 23 6 0.8000 0.1794 -7.9319 24 6 0.6304 1.5509 -7.9079 25 6 -0.5509 2.0940 -8.3888 26 6 -1.5261 1.2327 -8.8684 27 6 -1.2875 -0.1284 -8.8561 28 7 -0.1493 -0.6096 -8.3954 29 6 2.1888 0.0676 -4.8719 30 1 -0.3633 0.6134 -0.8245 31 1 -0.3634 -1.0207 -0.1189 32 1 -0.3633 0.4074 0.9434 33 1 1.8933 -0.5138 0.8900 34 1 1.7602 1.9267 0.9356 35 1 3.1255 1.4440 -0.0995 36 1 1.5977 1.9842 -0.8360 37 1 3.5244 -1.9639 -1.9098 38 1 3.4179 -1.8391 -0.1374 39 1 4.2060 -5.3865 -0.7328 40 1 1.8638 -3.0064 -3.7376 41 1 0.4073 -1.9631 -3.7443 42 1 2.8847 0.3121 -7.4948 43 1 2.3354 -1.3009 -8.0092 44 1 1.4098 2.1917 -7.5225 45 1 -0.7095 3.1623 -8.3865 46 1 -2.4602 1.6207 -9.2470 47 1 -2.0421 -0.8059 -9.2275 48 1 1.3736 0.7781 -4.7352 49 1 3.1298 0.5966 -5.0228 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608815291.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:26 Heat of formation + Delta-G solvation = -29.681926 kcal Electronic energy + Delta-G solvation = -31319.480573 eV Core-core repulsion = 27246.658166 eV Total energy + Delta-G solvation = -4072.822406 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.70914 -40.03043 -38.93902 -36.11105 -35.34253 -33.93057 -33.02726 -32.48687 -31.65205 -30.48547 -27.43222 -27.00173 -26.73102 -26.65256 -23.75691 -23.43461 -22.76623 -22.18656 -20.90110 -19.23374 -18.17599 -17.16562 -16.72075 -16.62081 -16.45587 -16.23769 -15.72464 -15.47432 -15.15948 -14.71400 -14.45549 -14.22385 -13.96139 -13.64809 -13.49115 -13.28879 -13.19760 -12.91071 -12.85776 -12.61933 -12.45082 -12.26366 -12.04162 -11.84960 -11.79131 -11.57029 -11.45739 -11.06587 -10.93551 -10.90126 -10.83880 -10.69512 -10.40973 -10.08038 -10.01206 -9.73855 -9.58842 -9.50672 -9.14512 -8.89730 -8.55993 -8.50828 -7.78898 -6.21137 -4.28177 0.91529 1.16726 2.96387 3.07450 3.24850 3.25468 3.33020 3.36864 3.75816 3.86442 4.16962 4.32938 4.54337 4.69476 4.70729 4.82230 4.92920 4.98663 5.11397 5.13386 5.24421 5.33739 5.40036 5.43114 5.55069 5.62729 5.64472 5.67589 5.72978 5.81258 5.95196 5.98601 6.01492 6.03212 6.16204 6.28521 6.32112 6.40752 6.51076 6.54493 6.66225 6.70078 6.75380 6.81262 7.12824 7.33135 7.51103 7.73977 7.94653 8.01262 8.27172 8.52081 8.75149 8.92259 9.40175 10.85349 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010881 B = 0.003648 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.657083 B = 7674.364310 C = 9186.130554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.148 3.852 3 C -0.164 4.164 4 N -0.586 5.586 5 C 0.235 3.765 6 C -0.536 4.536 7 H 0.062 0.938 8 C 0.068 3.932 9 N -0.890 5.890 10 Si 0.890 3.110 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.531 3.469 15 O -0.566 6.566 16 C -0.115 4.115 17 H 0.114 0.886 18 C -0.129 4.129 19 C 0.523 3.477 20 O -0.519 6.519 21 N -0.619 5.619 22 C 0.178 3.822 23 C 0.109 3.891 24 C -0.158 4.158 25 C -0.078 4.078 26 C -0.175 4.175 27 C 0.098 3.902 28 N -0.460 5.460 29 C 0.116 3.884 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.039 0.961 38 H 0.035 0.965 39 H 0.266 0.734 40 H 0.127 0.873 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.135 0.865 45 H 0.133 0.867 46 H 0.133 0.867 47 H 0.154 0.846 48 H 0.087 0.913 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.044 14.054 -9.882 17.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 C -0.222 4.222 4 N -0.316 5.316 5 C 0.115 3.885 6 C -0.574 4.574 7 H 0.080 0.920 8 C -0.135 4.135 9 N -0.528 5.528 10 Si 0.717 3.283 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.198 1.198 14 C 0.318 3.682 15 O -0.447 6.447 16 C -0.136 4.136 17 H 0.132 0.868 18 C -0.169 4.169 19 C 0.311 3.689 20 O -0.394 6.394 21 N -0.354 5.354 22 C 0.055 3.945 23 C -0.030 4.030 24 C -0.179 4.179 25 C -0.104 4.104 26 C -0.195 4.195 27 C -0.059 4.059 28 N -0.169 5.169 29 C -0.007 4.007 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.145 0.855 41 H 0.119 0.881 42 H 0.112 0.888 43 H 0.117 0.883 44 H 0.152 0.848 45 H 0.151 0.849 46 H 0.151 0.849 47 H 0.171 0.829 48 H 0.105 0.895 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.261 12.987 -10.332 16.913 hybrid contribution -0.705 -0.040 0.235 0.744 sum -3.966 12.947 -10.097 16.891 Atomic orbital electron populations 1.22162 0.95602 1.02641 1.01705 1.20845 0.94286 0.92235 0.88172 1.22185 1.00842 0.96948 1.02275 1.48318 1.50894 1.28278 1.04069 1.19530 0.90159 0.80325 0.98469 1.21443 0.93749 0.90539 1.51684 0.91987 1.24899 0.94984 0.98986 0.94653 1.69899 1.09811 1.23990 1.49093 0.86610 0.80708 0.82449 0.78530 1.20110 1.21116 1.19787 1.19814 0.80913 0.82969 0.84488 1.90543 1.37678 1.29864 1.86665 1.22116 1.02539 0.95961 0.93010 0.86798 1.22246 1.02410 1.00839 0.91400 1.21098 0.75185 0.81404 0.91206 1.90710 1.48208 1.39586 1.60846 1.48244 1.67591 1.14530 1.05019 1.20105 0.91773 1.01068 0.81572 1.21748 0.96096 0.90268 0.94910 1.21998 0.98952 0.95957 1.00966 1.21566 0.93071 1.00396 0.95387 1.22167 1.00417 0.95090 1.01811 1.22818 0.94323 0.93539 0.95236 1.67593 1.00974 1.40091 1.08232 1.22045 1.02266 0.92798 0.83617 0.90949 0.92359 0.93143 0.89812 0.92656 0.93076 0.90931 0.94275 0.94656 0.92466 0.85499 0.88105 0.88763 0.88293 0.84752 0.84868 0.84925 0.82854 0.89463 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.02 37.15 0.34 -2.40 16 2 C 0.15 2.55 3.28 -67.94 -0.22 2.32 16 3 C -0.16 -2.45 9.02 37.16 0.34 -2.12 16 4 N -0.59 -11.15 2.41 -167.48 -0.40 -11.55 16 5 C 0.23 5.11 4.98 -5.20 -0.03 5.08 16 6 C -0.54 -13.00 8.18 -34.44 -0.28 -13.28 16 7 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 8 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -23.62 13.29 55.43 0.74 -22.88 16 10 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 14 C 0.53 9.72 6.24 -10.98 -0.07 9.65 16 15 O -0.57 -10.90 11.94 5.56 0.07 -10.84 16 16 C -0.11 -1.89 2.65 -90.14 -0.24 -2.13 16 17 H 0.11 1.86 6.42 -51.93 -0.33 1.52 16 18 C -0.13 -2.37 5.90 -26.74 -0.16 -2.53 16 19 C 0.52 9.75 8.02 -10.86 -0.09 9.66 16 20 O -0.52 -11.41 17.60 5.56 0.10 -11.31 16 21 N -0.62 -9.30 2.92 -173.78 -0.51 -9.81 16 22 C 0.18 2.24 6.24 -5.19 -0.03 2.21 16 23 C 0.11 1.44 6.36 -82.59 -0.53 0.91 16 24 C -0.16 -1.66 9.72 -39.44 -0.38 -2.05 16 25 C -0.08 -0.73 10.18 -39.28 -0.40 -1.13 16 26 C -0.17 -1.68 10.11 -39.44 -0.40 -2.07 16 27 C 0.10 1.17 11.18 -17.55 -0.20 0.98 16 28 N -0.46 -6.89 10.27 -9.47 -0.10 -6.99 16 29 C 0.12 1.61 6.83 -3.12 -0.02 1.59 16 30 H 0.07 1.29 6.31 -51.93 -0.33 0.97 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.45 7.79 -51.93 -0.40 1.04 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.17 6.42 -51.93 -0.33 0.84 16 37 H 0.04 0.87 5.91 -51.93 -0.31 0.56 16 38 H 0.04 0.82 7.91 -51.93 -0.41 0.41 16 39 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 40 H 0.13 2.60 7.40 -51.93 -0.38 2.21 16 41 H 0.10 1.94 7.89 -51.93 -0.41 1.53 16 42 H 0.09 0.83 8.04 -51.93 -0.42 0.41 16 43 H 0.10 1.36 7.93 -51.93 -0.41 0.95 16 44 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 45 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 47 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 48 H 0.09 1.31 6.85 -51.93 -0.36 0.95 16 49 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 400.58 15.07 6.04 6.04 Total: -1.00 -31.01 400.58 -9.00 -40.01 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -7.45 Total: 5.62 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -2.47 Total: 6.33 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -0.27 Total: -51.23 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: 0.16 Total: -22.15 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.01 -9.00 -40.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608815291.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.333 kcal (2) G-P(sol) polarization free energy of solvation -31.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds