Wall clock time and date at job start Wed Apr 1 2020 03:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47600 * 2 1 4 4 N 1.46497 * 109.47260 * 239.99820 * 2 1 3 5 5 C 1.46493 * 120.00350 * 240.96465 * 4 2 1 6 6 C 1.50704 * 109.47230 * 89.99838 * 5 4 2 7 7 H 1.07991 * 119.99936 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99521 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00866 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99574 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47076 * 89.99851 * 10 8 6 12 12 H 1.48495 * 109.47265 * 210.00106 * 10 8 6 13 13 H 1.48504 * 109.47137 * 330.00164 * 10 8 6 14 14 C 1.34785 * 119.99766 * 60.96204 * 4 2 1 15 15 O 1.21280 * 119.99573 * 355.55830 * 14 4 2 16 16 C 1.50698 * 119.99781 * 175.56500 * 14 4 2 17 17 H 1.08999 * 110.85528 * 322.02404 * 16 14 4 18 18 C 1.54626 * 110.97510 * 85.81811 * 16 14 4 19 19 C 1.51280 * 104.19909 * 142.91406 * 18 16 14 20 20 O 1.21280 * 124.94227 * 163.78541 * 19 18 16 21 21 N 1.34422 * 110.11240 * 343.74588 * 19 18 16 22 22 C 1.46497 * 124.34474 * 179.56940 * 21 19 18 23 23 C 1.50707 * 109.47139 * 89.97942 * 22 21 19 24 24 C 1.38220 * 119.61857 * 94.72439 * 23 22 21 25 25 C 1.38628 * 119.16149 * 179.75891 * 24 23 22 26 26 C 1.38667 * 118.41885 * 0.50310 * 25 24 23 27 27 C 1.38185 * 119.16511 * 359.73885 * 26 25 24 28 28 N 1.31848 * 119.61634 * 274.99835 * 23 22 21 29 29 C 1.46761 * 111.30279 * 359.59473 * 21 19 18 30 30 H 1.09002 * 109.46993 * 53.35253 * 1 2 3 31 31 H 1.08996 * 109.47443 * 173.35646 * 1 2 3 32 32 H 1.09000 * 109.47089 * 293.35820 * 1 2 3 33 33 H 1.09005 * 109.47138 * 119.99845 * 2 1 3 34 34 H 1.09002 * 109.46797 * 65.55354 * 3 2 1 35 35 H 1.08997 * 109.47418 * 185.55754 * 3 2 1 36 36 H 1.09000 * 109.47039 * 305.56248 * 3 2 1 37 37 H 1.09002 * 109.47370 * 209.99594 * 5 4 2 38 38 H 1.09000 * 109.47528 * 329.99604 * 5 4 2 39 39 H 0.96993 * 120.00663 * 179.97438 * 9 8 6 40 40 H 1.09002 * 110.48365 * 261.59455 * 18 16 14 41 41 H 1.08998 * 110.48608 * 24.23202 * 18 16 14 42 42 H 1.09005 * 109.47351 * 209.97779 * 22 21 19 43 43 H 1.08997 * 109.47771 * 329.97551 * 22 21 19 44 44 H 1.08009 * 120.42116 * 359.97438 * 24 23 22 45 45 H 1.08000 * 120.78962 * 180.26534 * 25 24 23 46 46 H 1.08003 * 120.41877 * 179.75587 * 26 25 24 47 47 H 1.08000 * 119.61908 * 179.97438 * 27 26 25 48 48 H 1.08998 * 110.24200 * 258.01460 * 29 21 19 49 49 H 1.09002 * 110.24681 * 136.01758 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.8430 -1.8939 -1.0618 6 6 1.9546 -3.1108 -1.0296 7 1 0.8829 -2.9990 -1.1014 8 6 2.5102 -4.3668 -0.9072 9 7 3.8153 -4.5030 -0.8192 10 14 1.4089 -5.8752 -0.8665 11 1 1.2008 -6.3736 -2.2498 12 1 2.0519 -6.9356 -0.0497 13 1 0.0985 -5.5153 -0.2676 14 6 1.7088 -0.2189 -2.4202 15 8 0.9605 0.7288 -2.5334 16 6 2.2923 -0.8693 -3.6480 17 1 3.3249 -1.1714 -3.4735 18 6 1.4323 -2.0728 -4.0986 19 6 1.4791 -2.0172 -5.6096 20 8 1.1711 -2.9286 -6.3481 21 7 1.9108 -0.8104 -6.0147 22 6 2.0824 -0.4217 -7.4167 23 6 0.8000 0.1794 -7.9319 24 6 0.6304 1.5509 -7.9079 25 6 -0.5509 2.0940 -8.3888 26 6 -1.5261 1.2327 -8.8684 27 6 -1.2875 -0.1284 -8.8561 28 7 -0.1493 -0.6096 -8.3954 29 6 2.1888 0.0676 -4.8719 30 1 -0.3633 0.6134 -0.8245 31 1 -0.3634 -1.0207 -0.1189 32 1 -0.3633 0.4074 0.9434 33 1 1.8933 -0.5138 0.8900 34 1 1.7602 1.9267 0.9356 35 1 3.1255 1.4440 -0.0995 36 1 1.5977 1.9842 -0.8360 37 1 3.5244 -1.9639 -1.9098 38 1 3.4179 -1.8391 -0.1374 39 1 4.2060 -5.3865 -0.7328 40 1 1.8638 -3.0064 -3.7376 41 1 0.4073 -1.9631 -3.7443 42 1 2.8847 0.3121 -7.4948 43 1 2.3354 -1.3009 -8.0092 44 1 1.4098 2.1917 -7.5225 45 1 -0.7095 3.1623 -8.3865 46 1 -2.4602 1.6207 -9.2470 47 1 -2.0421 -0.8059 -9.2275 48 1 1.3736 0.7781 -4.7352 49 1 3.1298 0.5966 -5.0228 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608815291.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:25 Heat of formation + Delta-G solvation = -47.400149 kcal Electronic energy + Delta-G solvation = -31320.248893 eV Core-core repulsion = 27246.658166 eV Total energy + Delta-G solvation = -4073.590726 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.99106 -41.05553 -40.34425 -37.57409 -36.85720 -35.28763 -34.58441 -33.36881 -33.06710 -31.64052 -29.02150 -28.57715 -27.95929 -27.78309 -25.07761 -24.55383 -24.26763 -23.14736 -22.27383 -20.54238 -19.65273 -18.55498 -18.27339 -18.02957 -17.49742 -17.31137 -16.90014 -16.74117 -16.46547 -16.25357 -15.90463 -15.77986 -15.03822 -14.92956 -14.66208 -14.52323 -14.41743 -14.19484 -14.08397 -14.04340 -13.84877 -13.69029 -13.35892 -13.19374 -13.03884 -12.83877 -12.73508 -12.67505 -12.65951 -12.35526 -12.28699 -12.14182 -12.05372 -11.70645 -11.56338 -11.03520 -10.81011 -10.60549 -10.43487 -10.31398 -10.01008 -9.72774 -9.39293 -8.18339 -6.28815 0.09227 0.38687 1.38378 1.43918 1.48214 1.49643 1.71293 1.96478 2.30983 2.44401 2.95051 3.13078 3.26862 3.36813 3.52768 3.73077 3.79196 3.95194 4.01765 4.07487 4.18006 4.24406 4.29474 4.33288 4.40588 4.46277 4.48597 4.59114 4.64192 4.74277 4.76649 4.84109 4.84513 4.93061 4.95777 5.04291 5.07476 5.13246 5.19385 5.25565 5.26004 5.37799 5.47793 5.51250 5.72119 5.79268 5.97376 5.99514 6.10652 6.62822 6.88191 7.09605 7.10997 7.34700 7.45800 8.86605 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010881 B = 0.003648 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.657083 B = 7674.364310 C = 9186.130554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.137 3.863 3 C -0.152 4.152 4 N -0.590 5.590 5 C 0.250 3.750 6 C -0.530 4.530 7 H 0.050 0.950 8 C 0.031 3.969 9 N -0.915 5.915 10 Si 0.934 3.066 11 H -0.283 1.283 12 H -0.281 1.281 13 H -0.272 1.272 14 C 0.532 3.468 15 O -0.571 6.571 16 C -0.111 4.111 17 H 0.118 0.882 18 C -0.124 4.124 19 C 0.518 3.482 20 O -0.563 6.563 21 N -0.605 5.605 22 C 0.174 3.826 23 C 0.081 3.919 24 C -0.155 4.155 25 C -0.080 4.080 26 C -0.167 4.167 27 C 0.073 3.927 28 N -0.510 5.510 29 C 0.125 3.875 30 H 0.060 0.940 31 H 0.033 0.967 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.037 0.963 38 H 0.023 0.977 39 H 0.266 0.734 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.140 0.860 43 H 0.078 0.922 44 H 0.164 0.836 45 H 0.168 0.832 46 H 0.164 0.836 47 H 0.162 0.838 48 H 0.084 0.916 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.060 17.268 -10.053 20.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.034 3.966 3 C -0.210 4.210 4 N -0.320 5.320 5 C 0.129 3.871 6 C -0.569 4.569 7 H 0.068 0.932 8 C -0.170 4.170 9 N -0.555 5.555 10 Si 0.761 3.239 11 H -0.209 1.209 12 H -0.206 1.206 13 H -0.197 1.197 14 C 0.319 3.681 15 O -0.453 6.453 16 C -0.133 4.133 17 H 0.136 0.864 18 C -0.165 4.165 19 C 0.306 3.694 20 O -0.441 6.441 21 N -0.339 5.339 22 C 0.052 3.948 23 C -0.057 4.057 24 C -0.175 4.175 25 C -0.105 4.105 26 C -0.187 4.187 27 C -0.084 4.084 28 N -0.220 5.220 29 C 0.003 3.997 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.041 0.959 39 H 0.075 0.925 40 H 0.119 0.881 41 H 0.105 0.895 42 H 0.158 0.842 43 H 0.097 0.903 44 H 0.181 0.819 45 H 0.186 0.814 46 H 0.181 0.819 47 H 0.179 0.821 48 H 0.102 0.898 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.280 16.257 -10.499 19.629 hybrid contribution -0.785 -0.958 0.271 1.268 sum -4.065 15.298 -10.229 18.847 Atomic orbital electron populations 1.22072 0.95329 1.01024 1.02777 1.21088 0.94530 0.93612 0.87330 1.22067 1.00770 0.94932 1.03207 1.48301 1.50847 1.27668 1.05193 1.19166 0.89782 0.80600 0.97554 1.21594 0.93427 0.91572 1.50313 0.93179 1.25403 0.95765 1.00922 0.94916 1.69957 1.10702 1.24322 1.50484 0.85915 0.79599 0.80441 0.77944 1.20899 1.20634 1.19659 1.19996 0.80636 0.82811 0.84607 1.90540 1.37799 1.30169 1.86758 1.22109 1.01971 0.95609 0.93595 0.86400 1.22049 1.01762 1.00699 0.91942 1.21069 0.75223 0.82256 0.90851 1.90676 1.50475 1.41359 1.61618 1.48254 1.65686 1.13248 1.06665 1.20398 0.93470 1.01526 0.79384 1.21835 0.95936 0.91538 0.96419 1.22312 1.00156 0.94957 1.00069 1.22051 0.92302 1.02111 0.94082 1.22517 1.01675 0.94031 1.00443 1.23129 0.94037 0.95256 0.96006 1.67498 1.02518 1.42085 1.09909 1.22121 1.04296 0.91663 0.81623 0.92067 0.94741 0.90307 0.90055 0.90062 0.92815 0.91992 0.94548 0.95922 0.92505 0.88119 0.89544 0.84184 0.90312 0.81870 0.81415 0.81878 0.82076 0.89775 0.86137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.01 9.02 71.98 0.65 -4.36 16 2 C 0.14 4.56 3.28 44.99 0.15 4.70 16 3 C -0.15 -4.16 9.02 71.98 0.65 -3.51 16 4 N -0.59 -22.22 2.41 -802.16 -1.93 -24.15 16 5 C 0.25 10.95 4.98 85.64 0.43 11.37 16 6 C -0.53 -26.18 8.18 25.60 0.21 -25.97 16 7 H 0.05 2.56 7.81 -2.91 -0.02 2.54 16 8 C 0.03 1.58 5.46 84.65 0.46 2.04 16 9 N -0.92 -49.13 13.29 21.45 0.28 -48.84 16 10 Si 0.93 42.55 29.54 68.60 2.03 44.58 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 13 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 14 C 0.53 19.05 6.24 87.65 0.55 19.60 16 15 O -0.57 -21.19 11.94 -3.03 -0.04 -21.23 16 16 C -0.11 -3.61 2.65 -10.48 -0.03 -3.64 16 17 H 0.12 3.75 6.42 -2.39 -0.02 3.74 16 18 C -0.12 -4.74 5.90 30.59 0.18 -4.56 16 19 C 0.52 19.89 8.02 87.90 0.71 20.60 16 20 O -0.56 -26.05 17.60 -3.03 -0.05 -26.10 16 21 N -0.61 -17.67 2.92 -822.32 -2.40 -20.07 16 22 C 0.17 4.16 6.24 85.64 0.53 4.70 16 23 C 0.08 2.05 6.36 42.55 0.27 2.32 16 24 C -0.15 -2.78 9.72 22.36 0.22 -2.56 16 25 C -0.08 -1.21 10.18 22.47 0.23 -0.99 16 26 C -0.17 -2.81 10.11 22.36 0.23 -2.59 16 27 C 0.07 1.72 11.18 84.67 0.95 2.66 16 28 N -0.51 -15.51 10.27 -183.88 -1.89 -17.39 16 29 C 0.13 3.19 6.83 86.83 0.59 3.78 16 30 H 0.06 2.12 6.31 -2.39 -0.02 2.11 16 31 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.08 2.73 7.79 -2.38 -0.02 2.71 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 1.85 6.42 -2.39 -0.02 1.83 16 37 H 0.04 1.63 5.91 -2.39 -0.01 1.62 16 38 H 0.02 1.06 7.91 -2.39 -0.02 1.04 16 39 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 40 H 0.10 4.36 7.40 -2.39 -0.02 4.34 16 41 H 0.09 3.50 7.89 -2.39 -0.02 3.48 16 42 H 0.14 1.98 8.04 -2.38 -0.02 1.96 16 43 H 0.08 2.21 7.93 -2.39 -0.02 2.19 16 44 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 45 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 46 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 47 H 0.16 3.20 8.06 -2.91 -0.02 3.17 16 48 H 0.08 2.29 6.85 -2.39 -0.02 2.28 16 49 H 0.12 2.12 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -69.92 400.58 3.92 -66.00 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: 0.95 Total: 23.60 kcal Atomic # 6 Polarization: 16.64 SS G_CDS: 6.97 Total: 23.61 kcal Atomic # 7 Polarization: -104.52 SS G_CDS: -5.93 Total: -110.45 kcal Atomic # 8 Polarization: -47.24 SS G_CDS: -0.09 Total: -47.33 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -69.92 3.92 -66.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608815291.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.602 kcal (2) G-P(sol) polarization free energy of solvation -69.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds