Wall clock time and date at job start Wed Apr 1 2020 03:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46900 * 111.00337 * 2 1 4 4 C 1.46901 * 111.00272 * 123.95479 * 2 1 3 5 5 C 1.53005 * 109.47079 * 83.77852 * 4 2 1 6 6 C 1.53001 * 109.47200 * 175.07479 * 5 4 2 7 7 O 1.42907 * 109.46925 * 295.07468 * 5 4 2 8 8 C 1.52999 * 109.47016 * 55.07109 * 5 4 2 9 9 N 1.46497 * 109.47033 * 180.65501 * 8 5 4 10 10 C 1.34776 * 120.00154 * 176.95961 * 9 8 5 11 11 O 1.21666 * 120.00073 * 5.64495 * 10 9 8 12 12 C 1.46887 * 120.00432 * 185.65344 * 10 9 8 13 13 C 1.36123 * 125.44342 * 173.54226 * 12 10 9 14 14 C 1.41693 * 107.75170 * 180.02562 * 13 12 10 15 15 C 1.40025 * 133.35029 * 179.97438 * 14 13 12 16 16 C 1.36578 * 119.83068 * 180.02562 * 15 14 13 17 17 C 1.38848 * 120.59941 * 359.97438 * 16 15 14 18 18 C 1.37842 * 120.63588 * 0.28506 * 17 16 15 19 19 C 1.39085 * 119.81615 * 359.46960 * 18 17 16 20 20 N 1.37836 * 133.17092 * 180.19175 * 19 18 17 21 21 C 1.36887 * 125.61719 * 0.26405 * 20 19 18 22 22 H 1.08007 * 119.99997 * 132.69003 * 21 20 19 23 23 C 1.39015 * 120.00227 * 312.69237 * 21 20 19 24 24 N 1.31343 * 119.99794 * 354.45626 * 23 21 20 25 25 Si 1.86802 * 119.99998 * 174.45945 * 23 21 20 26 26 H 1.48502 * 109.47242 * 94.98867 * 25 23 21 27 27 H 1.48499 * 109.46746 * 214.98701 * 25 23 21 28 28 H 1.48503 * 109.47169 * 334.98897 * 25 23 21 29 29 H 1.09001 * 109.46773 * 303.09904 * 1 2 3 30 30 H 1.09004 * 109.47190 * 63.09167 * 1 2 3 31 31 H 1.08992 * 109.47322 * 183.09712 * 1 2 3 32 32 H 1.08996 * 109.47495 * 183.95239 * 3 2 1 33 33 H 1.08995 * 109.47248 * 303.95641 * 3 2 1 34 34 H 1.09004 * 109.47379 * 63.95705 * 3 2 1 35 35 H 1.09005 * 109.46756 * 323.77993 * 4 2 1 36 36 H 1.08996 * 109.47544 * 203.77725 * 4 2 1 37 37 H 1.09003 * 109.46776 * 303.33021 * 6 5 4 38 38 H 1.09001 * 109.47066 * 63.33104 * 6 5 4 39 39 H 1.09000 * 109.46568 * 183.33019 * 6 5 4 40 40 H 0.96697 * 113.99576 * 72.92479 * 7 5 4 41 41 H 1.08999 * 109.46886 * 60.65425 * 8 5 4 42 42 H 1.08994 * 109.47541 * 300.65568 * 8 5 4 43 43 H 0.97006 * 120.00194 * 356.95146 * 9 8 5 44 44 H 1.08000 * 126.11948 * 0.06802 * 13 12 10 45 45 H 1.08000 * 120.08118 * 359.97438 * 15 14 13 46 46 H 1.07998 * 119.69641 * 179.97438 * 16 15 14 47 47 H 1.08001 * 119.68243 * 179.97438 * 17 16 15 48 48 H 1.08000 * 120.09637 * 179.69572 * 18 17 16 49 49 H 0.97000 * 120.00137 * 175.03950 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 2.0323 -2.2527 0.7780 6 6 2.6936 -3.0359 1.9139 7 8 0.6990 -2.7291 0.5842 8 6 2.8352 -2.4462 -0.5099 9 7 2.8573 -3.8679 -0.8627 10 6 3.4584 -4.2708 -1.9997 11 8 4.0708 -3.4700 -2.6809 12 6 3.3740 -5.6767 -2.4167 13 6 3.8286 -6.1784 -3.5977 14 6 3.5564 -7.5689 -3.6097 15 6 3.7910 -8.5863 -4.5427 16 6 3.4040 -9.8661 -4.2642 17 6 2.7791 -10.1697 -3.0620 18 6 2.5326 -9.1845 -2.1300 19 6 2.9222 -7.8746 -2.3889 20 7 2.8207 -6.7015 -1.6724 21 6 2.2623 -6.5724 -0.4293 22 1 2.7822 -6.0231 0.3418 23 6 1.0262 -7.1482 -0.1592 24 7 0.3443 -7.7220 -1.1240 25 14 0.3352 -7.1060 1.5758 26 1 -0.5737 -5.9403 1.7184 27 1 -0.4199 -8.3574 1.8384 28 1 1.4498 -6.9867 2.5498 29 1 -0.3633 0.5612 0.8609 30 1 -0.3634 0.4651 -0.9164 31 1 -0.3633 -1.0261 0.0555 32 1 3.0827 1.3432 -0.0708 33 1 1.5898 1.9163 -0.8524 34 1 1.7045 1.8724 0.9233 35 1 1.3516 -0.6177 2.0046 36 1 3.0036 -0.4236 1.3708 37 1 3.6891 -2.6333 2.1012 38 1 2.0895 -2.9463 2.8167 39 1 2.7733 -4.0860 1.6327 40 1 0.2878 -2.4241 -0.2362 41 1 3.8554 -2.0935 -0.3585 42 1 2.3707 -1.8789 -1.3164 43 1 2.4394 -4.5193 -0.2779 44 1 4.3111 -5.6172 -4.3842 45 1 4.2761 -8.3593 -5.4806 46 1 3.5856 -10.6490 -4.9855 47 1 2.4788 -11.1867 -2.8572 48 1 2.0415 -9.4295 -1.1999 49 1 -0.4833 -8.1864 -0.9231 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611058899.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:44 Heat of formation + Delta-G solvation = -14.867325 kcal Electronic energy + Delta-G solvation = -31629.644129 eV Core-core repulsion = 27557.464132 eV Total energy + Delta-G solvation = -4072.179997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.46342 -39.46031 -38.08998 -36.08653 -35.87815 -33.97102 -33.39196 -31.64462 -30.68278 -29.02342 -28.14303 -27.73245 -27.18041 -26.02652 -24.96359 -22.74998 -22.11948 -20.94328 -20.31799 -19.97708 -19.20282 -18.21611 -17.00958 -16.47739 -15.88741 -15.65277 -15.37639 -14.93340 -14.85562 -14.78591 -14.59932 -14.39585 -13.83626 -13.64409 -13.32180 -13.12642 -12.97826 -12.89478 -12.75223 -12.57221 -12.42768 -12.24767 -12.14023 -11.90806 -11.76890 -11.69444 -11.61042 -11.53114 -11.38328 -11.15146 -10.73747 -10.62670 -10.49037 -10.14947 -9.95479 -9.75641 -9.32395 -9.22445 -8.59888 -8.54181 -8.35343 -7.16055 -6.81652 -6.50138 -4.69961 1.88717 2.79375 2.96982 3.01690 3.05057 3.19952 3.71639 3.75303 3.83635 4.30062 4.34485 4.59240 4.70141 4.84847 4.85340 4.93767 5.07825 5.10034 5.16505 5.22946 5.39497 5.45893 5.58056 5.68293 5.71276 5.73609 5.81203 5.86235 5.93120 5.98174 6.11866 6.16132 6.20661 6.32665 6.46589 6.60323 6.73061 6.78218 6.78707 6.87298 6.94672 7.11564 7.14868 7.15611 7.51514 7.60669 7.67839 7.74490 7.94998 7.97761 8.33396 8.36695 8.72057 9.05363 9.31583 10.18599 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013180 B = 0.003878 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.940561 B = 7218.756391 C = 8722.071868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.547 5.547 3 C 0.025 3.975 4 C 0.033 3.967 5 C 0.129 3.871 6 C -0.147 4.147 7 O -0.552 6.552 8 C 0.101 3.899 9 N -0.725 5.725 10 C 0.594 3.406 11 O -0.560 6.560 12 C -0.014 4.014 13 C -0.166 4.166 14 C -0.134 4.134 15 C -0.086 4.086 16 C -0.162 4.162 17 C -0.146 4.146 18 C -0.057 4.057 19 C 0.109 3.891 20 N -0.261 5.261 21 C -0.375 4.375 22 H 0.103 0.897 23 C 0.065 3.935 24 N -0.818 5.818 25 Si 0.920 3.080 26 H -0.262 1.262 27 H -0.275 1.275 28 H -0.262 1.262 29 H 0.026 0.974 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.023 0.977 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.378 0.622 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.419 0.581 44 H 0.132 0.868 45 H 0.104 0.896 46 H 0.102 0.898 47 H 0.105 0.895 48 H 0.113 0.887 49 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.250 9.361 5.617 10.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.270 5.270 3 C -0.123 4.123 4 C -0.096 4.096 5 C 0.087 3.913 6 C -0.204 4.204 7 O -0.361 6.361 8 C -0.023 4.023 9 N -0.386 5.386 10 C 0.383 3.617 11 O -0.440 6.440 12 C -0.129 4.129 13 C -0.194 4.194 14 C -0.139 4.139 15 C -0.105 4.105 16 C -0.181 4.181 17 C -0.167 4.167 18 C -0.076 4.076 19 C -0.005 4.005 20 N 0.074 4.926 21 C -0.502 4.502 22 H 0.120 0.880 23 C -0.149 4.149 24 N -0.447 5.447 25 Si 0.743 3.257 26 H -0.186 1.186 27 H -0.200 1.200 28 H -0.186 1.186 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.042 0.958 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.229 0.771 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.265 0.735 44 H 0.149 0.851 45 H 0.122 0.878 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.131 0.869 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.012 9.483 5.610 11.019 hybrid contribution -1.168 0.396 1.212 1.729 sum -1.156 9.879 6.822 12.062 Atomic orbital electron populations 1.22726 0.87129 1.03031 1.00749 1.61962 1.08209 1.13995 1.42868 1.22413 1.00875 0.88660 1.00334 1.22798 1.00744 0.94035 0.92021 1.21410 0.83295 0.91657 0.94910 1.21825 0.99902 1.01408 0.97285 1.86606 1.27387 1.76152 1.45953 1.21819 1.00297 0.83447 0.96771 1.46676 1.58308 1.08805 1.24766 1.17265 0.77862 0.86265 0.80283 1.90709 1.43669 1.54437 1.55200 1.20199 1.10119 0.88162 0.94388 1.20389 1.08795 0.93001 0.97204 1.18045 1.06074 0.93652 0.96081 1.20061 1.00758 0.92046 0.97592 1.20261 1.04247 0.95862 0.97699 1.20569 1.03406 0.97798 0.94877 1.20039 0.98235 0.89894 0.99459 1.18286 1.01294 0.88007 0.92952 1.39898 1.37953 1.02710 1.12026 1.19409 1.02248 1.41185 0.87393 0.87954 1.25646 0.94817 0.94737 0.99689 1.69921 1.14447 1.28226 1.32072 0.86009 0.79914 0.78964 0.80770 1.18637 1.20046 1.18646 0.95558 0.91302 0.90035 0.91185 0.91295 0.95818 0.92983 0.90057 0.90986 0.91702 0.90973 0.77096 0.91728 0.90042 0.73469 0.85057 0.87781 0.87946 0.87715 0.86877 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.19 60.06 0.55 0.67 16 2 N -0.55 -5.87 3.91 -251.27 -0.98 -6.85 16 3 C 0.03 0.22 9.45 60.06 0.57 0.79 16 4 C 0.03 0.36 4.40 -3.82 -0.02 0.34 16 5 C 0.13 1.73 0.86 -90.62 -0.08 1.65 16 6 C -0.15 -1.91 8.72 37.16 0.32 -1.58 16 7 O -0.55 -8.29 11.77 -35.23 -0.41 -8.70 16 8 C 0.10 1.63 4.47 -4.04 -0.02 1.61 16 9 N -0.72 -14.31 5.09 -61.56 -0.31 -14.63 16 10 C 0.59 13.69 7.76 -12.76 -0.10 13.59 16 11 O -0.56 -13.65 16.86 5.22 0.09 -13.56 16 12 C -0.01 -0.34 6.77 -82.25 -0.56 -0.90 16 13 C -0.17 -3.97 10.55 -39.02 -0.41 -4.38 16 14 C -0.13 -3.19 6.16 -106.89 -0.66 -3.85 16 15 C -0.09 -1.78 10.06 -39.51 -0.40 -2.18 16 16 C -0.16 -3.14 9.97 -39.96 -0.40 -3.54 16 17 C -0.15 -2.98 10.02 -39.50 -0.40 -3.37 16 18 C -0.06 -1.32 8.63 -39.41 -0.34 -1.66 16 19 C 0.11 2.75 6.03 -83.83 -0.51 2.24 16 20 N -0.26 -6.59 2.78 -56.08 -0.16 -6.75 16 21 C -0.38 -9.01 7.61 -15.01 -0.11 -9.13 16 22 H 0.10 2.33 6.25 -52.48 -0.33 2.00 16 23 C 0.07 1.54 4.86 -17.47 -0.08 1.45 16 24 N -0.82 -20.41 10.95 55.50 0.61 -19.81 16 25 Si 0.92 18.04 29.56 -169.99 -5.02 13.02 16 26 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 27 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 28 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 29 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.84 4.65 -51.93 -0.24 0.60 16 32 H 0.07 0.60 8.05 -51.93 -0.42 0.18 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.05 0.55 7.88 -51.93 -0.41 0.15 16 36 H 0.08 0.79 7.76 -51.93 -0.40 0.38 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.07 1.09 6.50 -51.93 -0.34 0.76 16 40 H 0.38 5.18 6.49 45.56 0.30 5.47 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.08 1.38 7.45 -51.93 -0.39 0.99 16 43 H 0.42 8.51 3.04 -40.82 -0.12 8.39 16 44 H 0.13 2.90 8.06 -52.49 -0.42 2.48 16 45 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 46 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 47 H 0.10 1.83 8.06 -52.49 -0.42 1.40 16 48 H 0.11 2.68 6.88 -52.49 -0.36 2.32 16 49 H 0.28 6.58 8.31 -40.82 -0.34 6.24 16 LS Contribution 390.23 15.07 5.88 5.88 Total: -1.00 -29.26 390.23 -9.44 -38.71 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: -6.50 Total: 20.92 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -2.63 Total: -8.24 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: -0.84 Total: -48.03 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.33 Total: -22.26 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.02 Total: 13.02 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.26 -9.44 -38.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611058899.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.841 kcal (2) G-P(sol) polarization free energy of solvation -29.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds