Wall clock time and date at job start Wed Apr 1 2020 03:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46900 * 111.00337 * 2 1 4 4 C 1.46901 * 111.00272 * 123.95479 * 2 1 3 5 5 C 1.53005 * 109.47079 * 83.77852 * 4 2 1 6 6 C 1.53001 * 109.47200 * 175.07479 * 5 4 2 7 7 O 1.42907 * 109.46925 * 295.07468 * 5 4 2 8 8 C 1.52999 * 109.47016 * 55.07109 * 5 4 2 9 9 N 1.46497 * 109.47033 * 180.65501 * 8 5 4 10 10 C 1.34776 * 120.00154 * 176.95961 * 9 8 5 11 11 O 1.21666 * 120.00073 * 5.64495 * 10 9 8 12 12 C 1.46887 * 120.00432 * 185.65344 * 10 9 8 13 13 C 1.36123 * 125.44342 * 173.54226 * 12 10 9 14 14 C 1.41693 * 107.75170 * 180.02562 * 13 12 10 15 15 C 1.40025 * 133.35029 * 179.97438 * 14 13 12 16 16 C 1.36578 * 119.83068 * 180.02562 * 15 14 13 17 17 C 1.38848 * 120.59941 * 359.97438 * 16 15 14 18 18 C 1.37842 * 120.63588 * 0.28506 * 17 16 15 19 19 C 1.39085 * 119.81615 * 359.46960 * 18 17 16 20 20 N 1.37836 * 133.17092 * 180.19175 * 19 18 17 21 21 C 1.36887 * 125.61719 * 0.26405 * 20 19 18 22 22 H 1.08007 * 119.99997 * 132.69003 * 21 20 19 23 23 C 1.39015 * 120.00227 * 312.69237 * 21 20 19 24 24 N 1.31343 * 119.99794 * 354.45626 * 23 21 20 25 25 Si 1.86802 * 119.99998 * 174.45945 * 23 21 20 26 26 H 1.48502 * 109.47242 * 94.98867 * 25 23 21 27 27 H 1.48499 * 109.46746 * 214.98701 * 25 23 21 28 28 H 1.48503 * 109.47169 * 334.98897 * 25 23 21 29 29 H 1.09001 * 109.46773 * 303.09904 * 1 2 3 30 30 H 1.09004 * 109.47190 * 63.09167 * 1 2 3 31 31 H 1.08992 * 109.47322 * 183.09712 * 1 2 3 32 32 H 1.08996 * 109.47495 * 183.95239 * 3 2 1 33 33 H 1.08995 * 109.47248 * 303.95641 * 3 2 1 34 34 H 1.09004 * 109.47379 * 63.95705 * 3 2 1 35 35 H 1.09005 * 109.46756 * 323.77993 * 4 2 1 36 36 H 1.08996 * 109.47544 * 203.77725 * 4 2 1 37 37 H 1.09003 * 109.46776 * 303.33021 * 6 5 4 38 38 H 1.09001 * 109.47066 * 63.33104 * 6 5 4 39 39 H 1.09000 * 109.46568 * 183.33019 * 6 5 4 40 40 H 0.96697 * 113.99576 * 72.92479 * 7 5 4 41 41 H 1.08999 * 109.46886 * 60.65425 * 8 5 4 42 42 H 1.08994 * 109.47541 * 300.65568 * 8 5 4 43 43 H 0.97006 * 120.00194 * 356.95146 * 9 8 5 44 44 H 1.08000 * 126.11948 * 0.06802 * 13 12 10 45 45 H 1.08000 * 120.08118 * 359.97438 * 15 14 13 46 46 H 1.07998 * 119.69641 * 179.97438 * 16 15 14 47 47 H 1.08001 * 119.68243 * 179.97438 * 17 16 15 48 48 H 1.08000 * 120.09637 * 179.69572 * 18 17 16 49 49 H 0.97000 * 120.00137 * 175.03950 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 2.0323 -2.2527 0.7780 6 6 2.6936 -3.0359 1.9139 7 8 0.6990 -2.7291 0.5842 8 6 2.8352 -2.4462 -0.5099 9 7 2.8573 -3.8679 -0.8627 10 6 3.4584 -4.2708 -1.9997 11 8 4.0708 -3.4700 -2.6809 12 6 3.3740 -5.6767 -2.4167 13 6 3.8286 -6.1784 -3.5977 14 6 3.5564 -7.5689 -3.6097 15 6 3.7910 -8.5863 -4.5427 16 6 3.4040 -9.8661 -4.2642 17 6 2.7791 -10.1697 -3.0620 18 6 2.5326 -9.1845 -2.1300 19 6 2.9222 -7.8746 -2.3889 20 7 2.8207 -6.7015 -1.6724 21 6 2.2623 -6.5724 -0.4293 22 1 2.7822 -6.0231 0.3418 23 6 1.0262 -7.1482 -0.1592 24 7 0.3443 -7.7220 -1.1240 25 14 0.3352 -7.1060 1.5758 26 1 -0.5737 -5.9403 1.7184 27 1 -0.4199 -8.3574 1.8384 28 1 1.4498 -6.9867 2.5498 29 1 -0.3633 0.5612 0.8609 30 1 -0.3634 0.4651 -0.9164 31 1 -0.3633 -1.0261 0.0555 32 1 3.0827 1.3432 -0.0708 33 1 1.5898 1.9163 -0.8524 34 1 1.7045 1.8724 0.9233 35 1 1.3516 -0.6177 2.0046 36 1 3.0036 -0.4236 1.3708 37 1 3.6891 -2.6333 2.1012 38 1 2.0895 -2.9463 2.8167 39 1 2.7733 -4.0860 1.6327 40 1 0.2878 -2.4241 -0.2362 41 1 3.8554 -2.0935 -0.3585 42 1 2.3707 -1.8789 -1.3164 43 1 2.4394 -4.5193 -0.2779 44 1 4.3111 -5.6172 -4.3842 45 1 4.2761 -8.3593 -5.4806 46 1 3.5856 -10.6490 -4.9855 47 1 2.4788 -11.1867 -2.8572 48 1 2.0415 -9.4295 -1.1999 49 1 -0.4833 -8.1864 -0.9231 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611058899.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:43 Heat of formation + Delta-G solvation = -33.487475 kcal Electronic energy + Delta-G solvation = -31630.451559 eV Core-core repulsion = 27557.464132 eV Total energy + Delta-G solvation = -4072.987427 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.21228 -40.72502 -39.59642 -37.58308 -37.07205 -35.57919 -35.05003 -32.86978 -32.43975 -30.70834 -29.84516 -28.45771 -28.13026 -27.40130 -26.76401 -24.27222 -23.06951 -22.68017 -21.69072 -21.47243 -20.89385 -19.93445 -18.31579 -18.06677 -17.40069 -16.89325 -16.54136 -16.45549 -16.36193 -16.15832 -16.07259 -15.59585 -15.23429 -15.12962 -14.72456 -14.66841 -14.59656 -14.30369 -14.17274 -13.69086 -13.60507 -13.47965 -13.37783 -13.25197 -13.10412 -13.05245 -12.86110 -12.78469 -12.51382 -12.39200 -12.31840 -12.18018 -11.87551 -11.61661 -11.44843 -11.21177 -11.00422 -10.90647 -10.36552 -10.01886 -9.30136 -8.93216 -8.60028 -8.26636 -6.54981 0.13500 1.12321 1.36280 1.39024 1.46175 1.49388 2.10115 2.29662 2.52388 2.81984 2.92041 2.93630 3.23022 3.37081 3.71629 3.88194 3.95442 4.08537 4.24702 4.27086 4.29985 4.44032 4.50408 4.55438 4.58666 4.63544 4.67017 4.75245 4.77895 4.84073 4.87254 4.88335 4.92295 5.02199 5.02782 5.06426 5.11415 5.20900 5.24207 5.36959 5.46250 5.53435 5.77668 5.91508 5.97228 5.99366 6.03886 6.21167 6.27002 6.58776 6.60719 6.66196 6.93106 7.30273 7.51020 8.41286 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013180 B = 0.003878 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.940561 B = 7218.756391 C = 8722.071868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.564 5.564 3 C 0.026 3.974 4 C 0.042 3.958 5 C 0.133 3.867 6 C -0.149 4.149 7 O -0.567 6.567 8 C 0.102 3.898 9 N -0.715 5.715 10 C 0.589 3.411 11 O -0.582 6.582 12 C -0.043 4.043 13 C -0.178 4.178 14 C -0.156 4.156 15 C -0.091 4.091 16 C -0.154 4.154 17 C -0.134 4.134 18 C -0.086 4.086 19 C 0.080 3.920 20 N -0.274 5.274 21 C -0.389 4.389 22 H 0.108 0.892 23 C 0.033 3.967 24 N -0.851 5.851 25 Si 0.981 3.019 26 H -0.263 1.263 27 H -0.272 1.272 28 H -0.252 1.252 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.034 0.966 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.381 0.619 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.417 0.583 44 H 0.141 0.859 45 H 0.133 0.867 46 H 0.147 0.853 47 H 0.138 0.862 48 H 0.100 0.900 49 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.253 9.190 6.247 11.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.289 5.289 3 C -0.122 4.122 4 C -0.087 4.087 5 C 0.092 3.908 6 C -0.207 4.207 7 O -0.377 6.377 8 C -0.021 4.021 9 N -0.373 5.373 10 C 0.377 3.623 11 O -0.464 6.464 12 C -0.157 4.157 13 C -0.206 4.206 14 C -0.160 4.160 15 C -0.110 4.110 16 C -0.173 4.173 17 C -0.154 4.154 18 C -0.105 4.105 19 C -0.035 4.035 20 N 0.061 4.939 21 C -0.516 4.516 22 H 0.125 0.875 23 C -0.178 4.178 24 N -0.480 5.480 25 Si 0.802 3.198 26 H -0.187 1.187 27 H -0.196 1.196 28 H -0.175 1.175 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.233 0.767 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.263 0.737 44 H 0.159 0.841 45 H 0.151 0.849 46 H 0.164 0.836 47 H 0.156 0.844 48 H 0.118 0.882 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.011 9.327 6.254 11.230 hybrid contribution -1.143 0.382 0.921 1.516 sum -1.132 9.709 7.174 12.125 Atomic orbital electron populations 1.22701 0.86769 1.02617 1.01381 1.61928 1.08745 1.15196 1.42982 1.22437 1.00977 0.87680 1.01100 1.22680 1.01902 0.91927 0.92206 1.21498 0.82139 0.93736 0.93450 1.21884 1.01448 0.99835 0.97487 1.86588 1.28074 1.76776 1.46214 1.22006 1.01075 0.80984 0.98064 1.46663 1.56806 1.10456 1.23417 1.17253 0.78205 0.85773 0.81041 1.90671 1.44953 1.54728 1.56096 1.20590 1.10932 0.89059 0.95118 1.20629 1.08984 0.93565 0.97430 1.18428 1.06658 0.94248 0.96688 1.20478 1.00485 0.91932 0.98066 1.20742 1.02288 0.96382 0.97838 1.21026 1.01495 0.98597 0.94296 1.20129 1.00018 0.90175 1.00227 1.18764 1.02248 0.88680 0.93782 1.40088 1.38414 1.02978 1.12448 1.19706 1.02756 1.41669 0.87419 0.87532 1.26419 0.94569 0.93865 1.02993 1.70016 1.14894 1.29139 1.33976 0.85098 0.79289 0.78771 0.76651 1.18749 1.19642 1.17529 0.94758 0.90805 0.90935 0.90964 0.90888 0.94717 0.92205 0.88502 0.88811 0.90405 0.93534 0.76748 0.91245 0.90877 0.73696 0.84128 0.84868 0.83558 0.84448 0.88214 0.90557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.19 127.69 1.17 1.42 16 2 N -0.56 -11.35 3.91 -948.86 -3.71 -15.06 16 3 C 0.03 0.41 9.45 127.69 1.21 1.62 16 4 C 0.04 0.83 4.40 86.30 0.38 1.21 16 5 C 0.13 3.47 0.86 -10.79 -0.01 3.46 16 6 C -0.15 -3.70 8.72 71.98 0.63 -3.07 16 7 O -0.57 -16.84 11.77 -148.98 -1.75 -18.59 16 8 C 0.10 3.30 4.47 86.38 0.39 3.68 16 9 N -0.71 -29.00 5.09 -466.90 -2.38 -31.37 16 10 C 0.59 28.09 7.76 86.51 0.67 28.76 16 11 O -0.58 -29.20 16.86 -4.24 -0.07 -29.27 16 12 C -0.04 -2.18 6.77 39.91 0.27 -1.91 16 13 C -0.18 -8.76 10.55 22.63 0.24 -8.52 16 14 C -0.16 -7.50 6.16 -21.33 -0.13 -7.63 16 15 C -0.09 -3.61 10.06 22.31 0.22 -3.39 16 16 C -0.15 -5.49 9.97 22.03 0.22 -5.27 16 17 C -0.13 -5.19 10.02 22.32 0.22 -4.97 16 18 C -0.09 -4.02 8.63 22.38 0.19 -3.83 16 19 C 0.08 4.09 6.03 39.06 0.24 4.33 16 20 N -0.27 -14.32 2.78 -331.33 -0.92 -15.24 16 21 C -0.39 -19.24 7.61 84.09 0.64 -18.60 16 22 H 0.11 5.01 6.25 -2.91 -0.02 4.99 16 23 C 0.03 1.55 4.86 84.95 0.41 1.97 16 24 N -0.85 -43.45 10.95 21.67 0.24 -43.21 16 25 Si 0.98 37.22 29.56 68.60 2.03 39.25 16 26 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 27 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 28 H -0.25 -9.02 7.11 99.48 0.71 -8.32 16 29 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.47 4.65 -2.39 -0.01 1.45 16 32 H 0.07 1.10 8.05 -2.39 -0.02 1.09 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.03 0.47 8.14 -2.38 -0.02 0.46 16 35 H 0.06 1.13 7.88 -2.38 -0.02 1.11 16 36 H 0.10 1.63 7.76 -2.39 -0.02 1.61 16 37 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.05 1.39 6.50 -2.39 -0.02 1.38 16 40 H 0.38 10.55 6.49 -74.06 -0.48 10.07 16 41 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.07 2.50 7.45 -2.39 -0.02 2.48 16 43 H 0.42 17.44 3.04 -92.70 -0.28 17.16 16 44 H 0.14 6.39 8.06 -2.91 -0.02 6.37 16 45 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 46 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 47 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 48 H 0.10 4.85 6.88 -2.91 -0.02 4.83 16 49 H 0.28 13.53 8.31 -92.71 -0.77 12.76 16 Total: -1.00 -64.81 390.23 0.62 -64.19 By element: Atomic # 1 Polarization: 59.83 SS G_CDS: 0.22 Total: 60.05 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: 6.96 Total: -10.74 kcal Atomic # 7 Polarization: -98.11 SS G_CDS: -6.77 Total: -104.88 kcal Atomic # 8 Polarization: -46.04 SS G_CDS: -1.83 Total: -47.87 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.25 kcal Total: -64.81 0.62 -64.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611058899.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.707 kcal (2) G-P(sol) polarization free energy of solvation -64.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds