Wall clock time and date at job start Wed Apr 1 2020 03:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.46865 * 2 1 4 4 N 1.46903 * 109.46582 * 119.99751 * 2 1 3 5 5 C 1.46894 * 111.00273 * 293.05310 * 4 2 1 6 6 C 1.50704 * 109.47285 * 160.14050 * 5 4 2 7 7 H 1.07994 * 119.99861 * 4.69984 * 6 5 4 8 8 C 1.37881 * 119.99963 * 184.69861 * 6 5 4 9 9 N 1.31517 * 120.00023 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 119.99752 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47224 * 59.99964 * 10 8 6 12 12 H 1.48495 * 109.47220 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47576 * 300.00079 * 10 8 6 14 14 C 1.46905 * 110.99654 * 169.10238 * 4 2 1 15 15 N 1.46497 * 109.47269 * 278.95647 * 14 4 2 16 16 C 1.33798 * 124.17418 * 270.30188 * 15 14 4 17 17 O 1.21536 * 123.77121 * 359.97438 * 16 15 14 18 18 N 1.34526 * 112.45458 * 180.13583 * 16 15 14 19 19 C 1.47304 * 106.62041 * 359.61511 * 18 16 15 20 20 H 1.08997 * 110.60009 * 241.54062 * 19 18 16 21 21 C 1.53002 * 110.59832 * 118.74986 * 19 18 16 22 22 C 1.50692 * 109.47495 * 66.45422 * 21 19 18 23 23 C 1.38237 * 119.99853 * 269.72938 * 22 21 19 24 24 C 1.38244 * 119.99961 * 179.80960 * 23 22 21 25 25 C 1.38235 * 119.99785 * 0.41490 * 24 23 22 26 26 C 1.38235 * 120.00240 * 359.81267 * 25 24 23 27 27 C 1.38239 * 120.00099 * 0.02562 * 26 25 24 28 28 C 1.34765 * 124.18390 * 89.99768 * 15 14 4 29 29 O 1.21239 * 127.15142 * 0.02562 * 28 15 14 30 30 H 1.08996 * 109.47223 * 300.06151 * 1 2 3 31 31 H 1.09003 * 109.46779 * 60.05980 * 1 2 3 32 32 H 1.09001 * 109.47242 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47203 * 239.99357 * 2 1 3 34 34 H 1.09002 * 109.46663 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47341 * 299.99483 * 3 2 1 36 36 H 1.08999 * 109.47352 * 60.00017 * 3 2 1 37 37 H 1.08996 * 109.47638 * 280.14874 * 5 4 2 38 38 H 1.09007 * 109.46791 * 40.14153 * 5 4 2 39 39 H 0.96992 * 119.99415 * 180.02562 * 9 8 6 40 40 H 1.08998 * 109.47137 * 158.95061 * 14 4 2 41 41 H 1.09002 * 109.46632 * 38.95434 * 14 4 2 42 42 H 0.97005 * 126.68700 * 179.87240 * 18 16 15 43 43 H 1.09005 * 109.46580 * 186.45405 * 21 19 18 44 44 H 1.09004 * 109.47217 * 306.45047 * 21 19 18 45 45 H 1.07997 * 120.00192 * 359.97438 * 23 22 21 46 46 H 1.08000 * 120.00017 * 180.21242 * 24 23 22 47 47 H 1.07994 * 119.99911 * 179.79658 * 25 24 23 48 48 H 1.08000 * 120.00297 * 179.97438 * 26 25 24 49 49 H 1.07996 * 120.00193 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.6887 0.0627 2.4153 6 6 1.7494 -0.8552 3.6090 7 1 2.0812 -1.8759 3.4889 8 6 1.3814 -0.3919 4.8543 9 7 0.9769 0.8510 5.0004 10 14 1.4573 -1.5295 6.3340 11 1 2.8524 -2.0013 6.5246 12 1 1.0125 -0.7957 7.5459 13 1 0.5668 -2.6962 6.1077 14 6 3.4648 -0.9408 1.1110 15 7 3.7065 -2.1319 0.2932 16 6 3.7714 -3.3768 0.7793 17 8 3.6366 -3.6506 1.9557 18 7 4.0062 -4.2911 -0.1792 19 6 4.0981 -3.5539 -1.4512 20 1 3.3183 -3.8789 -2.1400 21 6 5.4805 -3.7367 -2.0808 22 6 5.6594 -5.1756 -2.4912 23 6 6.2041 -6.0849 -1.6038 24 6 6.3645 -7.4057 -1.9789 25 6 5.9881 -7.8154 -3.2444 26 6 5.4477 -6.9052 -4.1334 27 6 5.2842 -5.5851 -3.7572 28 6 3.8850 -2.1100 -1.0424 29 8 3.8766 -1.1374 -1.7663 30 1 -0.3633 0.5148 0.8894 31 1 -0.3633 0.5129 -0.8906 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 2.4041 0.8748 2.5446 38 1 0.6837 0.4750 2.3246 39 1 0.7184 1.1769 5.8766 40 1 3.8682 -1.0987 2.1112 41 1 3.9538 -0.0807 0.6536 42 1 4.0938 -5.2494 -0.0571 43 1 5.5681 -3.0952 -2.9577 44 1 6.2485 -3.4676 -1.3555 45 1 6.5019 -5.7640 -0.6165 46 1 6.7869 -8.1168 -1.2845 47 1 6.1165 -8.8466 -3.5386 48 1 5.1541 -7.2251 -5.1222 49 1 4.8624 -4.8738 -4.4518 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739842108.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:07 Heat of formation + Delta-G solvation = -8.352817 kcal Electronic energy + Delta-G solvation = -31100.437110 eV Core-core repulsion = 27028.539603 eV Total energy + Delta-G solvation = -4071.897507 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.21976 -39.57891 -38.37393 -37.73398 -36.05719 -34.57898 -32.74793 -32.66652 -31.22640 -30.58706 -29.01872 -27.40344 -26.52242 -25.39409 -24.34447 -22.94346 -22.53047 -22.28549 -21.26578 -20.43122 -18.67358 -17.85484 -17.28612 -16.83803 -16.67778 -15.94151 -15.69873 -15.49173 -15.40654 -15.00116 -14.71672 -14.58011 -14.21598 -13.99944 -13.89701 -13.74858 -13.56543 -13.25016 -13.24054 -12.59694 -12.56900 -12.29453 -12.15252 -11.86116 -11.71908 -11.49714 -11.30698 -11.20762 -11.03470 -10.83052 -10.63991 -10.54431 -10.42227 -10.26238 -9.95946 -9.78416 -9.49963 -9.41698 -9.25701 -9.10206 -8.99873 -8.35492 -7.38868 -5.95990 -3.95976 0.96040 1.06153 1.79548 2.47752 3.19755 3.35671 3.43045 3.44596 3.45503 3.51883 3.98195 4.44999 4.50324 4.53041 4.58054 4.69329 4.75906 4.82784 4.86169 5.09469 5.16971 5.27416 5.37069 5.39808 5.47155 5.51292 5.67521 5.69831 5.71935 5.75747 5.84643 6.01958 6.11709 6.12585 6.15236 6.19091 6.26412 6.32623 6.36781 6.45823 6.65757 6.76329 6.82144 6.92234 7.13933 7.28625 7.39942 7.54760 7.90770 8.05254 8.15818 8.45391 8.54895 9.15897 9.68741 11.14345 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013925 B = 0.003041 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.298272 B = 9204.361413 C =10722.489693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 C -0.179 4.179 4 N -0.540 5.540 5 C 0.198 3.802 6 C -0.507 4.507 7 H 0.071 0.929 8 C 0.056 3.944 9 N -0.902 5.902 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.290 1.290 13 H -0.277 1.277 14 C 0.285 3.715 15 N -0.559 5.559 16 C 0.702 3.298 17 O -0.519 6.519 18 N -0.731 5.731 19 C 0.100 3.900 20 H 0.122 0.878 21 C -0.079 4.079 22 C -0.083 4.083 23 C -0.114 4.114 24 C -0.117 4.117 25 C -0.122 4.122 26 C -0.118 4.118 27 C -0.113 4.113 28 C 0.525 3.475 29 O -0.474 6.474 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.065 0.935 37 H -0.006 1.006 38 H 0.045 0.955 39 H 0.260 0.740 40 H 0.116 0.884 41 H 0.066 0.934 42 H 0.435 0.565 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.124 0.876 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.122 0.878 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.022 -12.440 -19.566 25.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.038 4.038 3 C -0.238 4.238 4 N -0.265 5.265 5 C 0.074 3.926 6 C -0.545 4.545 7 H 0.089 0.911 8 C -0.144 4.144 9 N -0.542 5.542 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.216 1.216 13 H -0.203 1.203 14 C 0.075 3.925 15 N -0.305 5.305 16 C 0.402 3.598 17 O -0.389 6.389 18 N -0.397 5.397 19 C -0.009 4.009 20 H 0.140 0.860 21 C -0.118 4.118 22 C -0.084 4.084 23 C -0.132 4.132 24 C -0.135 4.135 25 C -0.140 4.140 26 C -0.136 4.136 27 C -0.131 4.131 28 C 0.311 3.689 29 O -0.345 6.345 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.012 0.988 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.134 0.866 41 H 0.083 0.917 42 H 0.279 0.721 43 H 0.117 0.883 44 H 0.104 0.896 45 H 0.142 0.858 46 H 0.141 0.859 47 H 0.138 0.862 48 H 0.140 0.860 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.604 -12.240 -19.034 24.583 hybrid contribution 0.328 -0.311 0.770 0.893 sum 9.932 -12.552 -18.263 24.284 Atomic orbital electron populations 1.21797 0.94734 1.01830 1.01225 1.21754 0.95865 0.92448 0.93694 1.22414 1.00780 0.98565 1.02055 1.62004 1.11322 1.49309 1.03890 1.19758 0.96683 0.91930 0.84241 1.21286 1.43380 0.98576 0.91282 0.91131 1.24946 0.95406 0.95116 0.98977 1.69949 1.45444 1.15060 1.23757 0.86554 0.78621 0.80682 0.81528 1.20209 1.21625 1.20255 1.22134 0.91682 0.82912 0.95776 1.46713 1.64611 1.09718 1.09502 1.15918 0.77621 0.80834 0.85398 1.91075 1.52824 1.80816 1.14189 1.45602 1.78191 1.09567 1.06352 1.21978 1.00139 0.90157 0.88667 0.86017 1.20783 0.94870 0.93959 1.02152 1.19711 0.99410 0.94916 0.94314 1.21158 0.99313 0.93233 0.99543 1.21193 0.99823 0.96003 0.96518 1.21193 0.99119 0.99644 0.94081 1.21165 0.99372 0.93429 0.99681 1.21112 0.99888 0.96263 0.95850 1.20732 0.74976 0.90696 0.82487 1.90775 1.47866 1.38546 1.57267 0.91651 0.93479 0.92620 0.91283 0.93256 0.93083 0.91577 0.98784 0.93753 0.93005 0.86598 0.91681 0.72144 0.88317 0.89613 0.85771 0.85945 0.86172 0.86024 0.85732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.18 37.16 0.34 -2.12 16 2 C 0.07 1.32 2.88 -67.71 -0.20 1.13 16 3 C -0.18 -3.14 8.54 37.15 0.32 -2.82 16 4 N -0.54 -11.59 4.46 -231.96 -1.04 -12.63 16 5 C 0.20 5.02 3.26 -4.98 -0.02 5.01 16 6 C -0.51 -14.41 8.53 -34.44 -0.29 -14.71 16 7 H 0.07 2.09 7.81 -52.49 -0.41 1.68 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 10 Si 0.90 22.61 29.54 -169.99 -5.02 17.59 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 14 C 0.29 5.56 5.20 -63.31 -0.33 5.23 16 15 N -0.56 -9.33 2.82 -124.03 -0.35 -9.68 16 16 C 0.70 11.79 8.62 -88.01 -0.76 11.03 16 17 O -0.52 -11.14 17.48 5.33 0.09 -11.05 16 18 N -0.73 -8.47 5.90 -59.20 -0.35 -8.82 16 19 C 0.10 1.01 3.67 -68.21 -0.25 0.76 16 20 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 21 C -0.08 -0.63 5.11 -27.89 -0.14 -0.77 16 22 C -0.08 -0.63 4.98 -104.62 -0.52 -1.15 16 23 C -0.11 -0.87 8.91 -39.58 -0.35 -1.22 16 24 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 25 C -0.12 -0.83 10.05 -39.58 -0.40 -1.22 16 26 C -0.12 -0.79 10.05 -39.58 -0.40 -1.19 16 27 C -0.11 -0.80 9.70 -39.58 -0.38 -1.18 16 28 C 0.53 7.38 6.88 -10.56 -0.07 7.31 16 29 O -0.47 -7.43 16.26 5.59 0.09 -7.34 16 30 H 0.06 1.28 6.29 -51.93 -0.33 0.95 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.26 5.54 -51.93 -0.29 0.97 16 34 H 0.05 0.85 6.48 -51.93 -0.34 0.51 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.26 6.74 -51.93 -0.35 0.91 16 37 H -0.01 -0.15 7.33 -51.93 -0.38 -0.53 16 38 H 0.04 1.20 5.89 -51.92 -0.31 0.89 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.12 2.52 6.98 -51.93 -0.36 2.16 16 41 H 0.07 1.19 6.02 -51.93 -0.31 0.88 16 42 H 0.43 4.22 8.33 -40.82 -0.34 3.88 16 43 H 0.10 0.71 8.09 -51.93 -0.42 0.29 16 44 H 0.09 0.71 8.08 -51.93 -0.42 0.29 16 45 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 46 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 47 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 48 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 49 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 396.89 15.07 5.98 5.98 Total: -1.00 -33.36 396.89 -10.99 -44.35 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.19 Total: 3.26 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -3.95 Total: 4.37 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -1.00 Total: -57.16 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.18 Total: -18.39 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.36 -10.99 -44.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739842108.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.000 kcal (2) G-P(sol) polarization free energy of solvation -33.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds