Wall clock time and date at job start Wed Apr 1 2020 03:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.46865 * 2 1 4 4 N 1.46903 * 109.46582 * 119.99751 * 2 1 3 5 5 C 1.46894 * 111.00273 * 293.05310 * 4 2 1 6 6 C 1.50704 * 109.47285 * 160.14050 * 5 4 2 7 7 H 1.07994 * 119.99861 * 4.69984 * 6 5 4 8 8 C 1.37881 * 119.99963 * 184.69861 * 6 5 4 9 9 N 1.31517 * 120.00023 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 119.99752 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47224 * 59.99964 * 10 8 6 12 12 H 1.48495 * 109.47220 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47576 * 300.00079 * 10 8 6 14 14 C 1.46905 * 110.99654 * 169.10238 * 4 2 1 15 15 N 1.46497 * 109.47269 * 278.95647 * 14 4 2 16 16 C 1.33798 * 124.17418 * 270.30188 * 15 14 4 17 17 O 1.21536 * 123.77121 * 359.97438 * 16 15 14 18 18 N 1.34526 * 112.45458 * 180.13583 * 16 15 14 19 19 C 1.47304 * 106.62041 * 359.61511 * 18 16 15 20 20 H 1.08997 * 110.60009 * 241.54062 * 19 18 16 21 21 C 1.53002 * 110.59832 * 118.74986 * 19 18 16 22 22 C 1.50692 * 109.47495 * 66.45422 * 21 19 18 23 23 C 1.38237 * 119.99853 * 269.72938 * 22 21 19 24 24 C 1.38244 * 119.99961 * 179.80960 * 23 22 21 25 25 C 1.38235 * 119.99785 * 0.41490 * 24 23 22 26 26 C 1.38235 * 120.00240 * 359.81267 * 25 24 23 27 27 C 1.38239 * 120.00099 * 0.02562 * 26 25 24 28 28 C 1.34765 * 124.18390 * 89.99768 * 15 14 4 29 29 O 1.21239 * 127.15142 * 0.02562 * 28 15 14 30 30 H 1.08996 * 109.47223 * 300.06151 * 1 2 3 31 31 H 1.09003 * 109.46779 * 60.05980 * 1 2 3 32 32 H 1.09001 * 109.47242 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47203 * 239.99357 * 2 1 3 34 34 H 1.09002 * 109.46663 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47341 * 299.99483 * 3 2 1 36 36 H 1.08999 * 109.47352 * 60.00017 * 3 2 1 37 37 H 1.08996 * 109.47638 * 280.14874 * 5 4 2 38 38 H 1.09007 * 109.46791 * 40.14153 * 5 4 2 39 39 H 0.96992 * 119.99415 * 180.02562 * 9 8 6 40 40 H 1.08998 * 109.47137 * 158.95061 * 14 4 2 41 41 H 1.09002 * 109.46632 * 38.95434 * 14 4 2 42 42 H 0.97005 * 126.68700 * 179.87240 * 18 16 15 43 43 H 1.09005 * 109.46580 * 186.45405 * 21 19 18 44 44 H 1.09004 * 109.47217 * 306.45047 * 21 19 18 45 45 H 1.07997 * 120.00192 * 359.97438 * 23 22 21 46 46 H 1.08000 * 120.00017 * 180.21242 * 24 23 22 47 47 H 1.07994 * 119.99911 * 179.79658 * 25 24 23 48 48 H 1.08000 * 120.00297 * 179.97438 * 26 25 24 49 49 H 1.07996 * 120.00193 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.6887 0.0627 2.4153 6 6 1.7494 -0.8552 3.6090 7 1 2.0812 -1.8759 3.4889 8 6 1.3814 -0.3919 4.8543 9 7 0.9769 0.8510 5.0004 10 14 1.4573 -1.5295 6.3340 11 1 2.8524 -2.0013 6.5246 12 1 1.0125 -0.7957 7.5459 13 1 0.5668 -2.6962 6.1077 14 6 3.4648 -0.9408 1.1110 15 7 3.7065 -2.1319 0.2932 16 6 3.7714 -3.3768 0.7793 17 8 3.6366 -3.6506 1.9557 18 7 4.0062 -4.2911 -0.1792 19 6 4.0981 -3.5539 -1.4512 20 1 3.3183 -3.8789 -2.1400 21 6 5.4805 -3.7367 -2.0808 22 6 5.6594 -5.1756 -2.4912 23 6 6.2041 -6.0849 -1.6038 24 6 6.3645 -7.4057 -1.9789 25 6 5.9881 -7.8154 -3.2444 26 6 5.4477 -6.9052 -4.1334 27 6 5.2842 -5.5851 -3.7572 28 6 3.8850 -2.1100 -1.0424 29 8 3.8766 -1.1374 -1.7663 30 1 -0.3633 0.5148 0.8894 31 1 -0.3633 0.5129 -0.8906 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 2.4041 0.8748 2.5446 38 1 0.6837 0.4750 2.3246 39 1 0.7184 1.1769 5.8766 40 1 3.8682 -1.0987 2.1112 41 1 3.9538 -0.0807 0.6536 42 1 4.0938 -5.2494 -0.0571 43 1 5.5681 -3.0952 -2.9577 44 1 6.2485 -3.4676 -1.3555 45 1 6.5019 -5.7640 -0.6165 46 1 6.7869 -8.1168 -1.2845 47 1 6.1165 -8.8466 -3.5386 48 1 5.1541 -7.2251 -5.1222 49 1 4.8624 -4.8738 -4.4518 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739842108.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:06 Heat of formation + Delta-G solvation = -29.990270 kcal Electronic energy + Delta-G solvation = -31101.375381 eV Core-core repulsion = 27028.539603 eV Total energy + Delta-G solvation = -4072.835777 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.43691 -40.16148 -39.70126 -39.27035 -37.29195 -35.78182 -34.86937 -33.53436 -32.22858 -31.71173 -29.83448 -29.21605 -28.03727 -26.78835 -25.58822 -24.29696 -23.65356 -23.33461 -21.90415 -21.69437 -20.27132 -19.05249 -18.74306 -18.20046 -17.62294 -17.33070 -16.78553 -16.71049 -16.58234 -16.20114 -16.12101 -15.77661 -15.63546 -15.24702 -15.12881 -14.95019 -14.40462 -14.28553 -14.17938 -14.09755 -13.85201 -13.70921 -13.27228 -13.19543 -12.94187 -12.88658 -12.80623 -12.63062 -12.36976 -12.23179 -12.14057 -12.07587 -11.83925 -11.75830 -11.49483 -11.35860 -11.17529 -10.88948 -10.57381 -10.48873 -9.76217 -9.58677 -9.14270 -8.18043 -6.25010 0.38522 0.55622 0.66690 1.20330 1.38478 1.40999 1.50141 2.02546 2.20488 2.41707 2.88875 2.94325 3.12314 3.24974 3.66662 3.83886 3.90814 3.95097 4.00606 4.13445 4.20511 4.23294 4.33332 4.37087 4.37445 4.50179 4.56674 4.61071 4.68817 4.74099 4.85002 4.87039 4.87474 4.90150 4.99150 5.10125 5.17926 5.23598 5.27100 5.34417 5.37549 5.63334 5.70214 5.71169 5.72818 5.85340 6.06218 6.15541 6.16860 6.22320 6.40365 6.57976 6.90024 7.19323 7.43390 8.91467 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013925 B = 0.003041 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.298272 B = 9204.361413 C =10722.489693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.070 3.930 3 C -0.171 4.171 4 N -0.551 5.551 5 C 0.220 3.780 6 C -0.519 4.519 7 H 0.052 0.948 8 C 0.010 3.990 9 N -0.929 5.929 10 Si 0.957 3.043 11 H -0.275 1.275 12 H -0.278 1.278 13 H -0.276 1.276 14 C 0.293 3.707 15 N -0.566 5.566 16 C 0.699 3.301 17 O -0.575 6.575 18 N -0.705 5.705 19 C 0.114 3.886 20 H 0.153 0.847 21 C -0.069 4.069 22 C -0.091 4.091 23 C -0.125 4.125 24 C -0.128 4.128 25 C -0.128 4.128 26 C -0.126 4.126 27 C -0.117 4.117 28 C 0.524 3.476 29 O -0.486 6.486 30 H 0.040 0.960 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.042 0.958 37 H -0.025 1.025 38 H 0.026 0.974 39 H 0.264 0.736 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.446 0.554 43 H 0.114 0.886 44 H 0.081 0.919 45 H 0.122 0.878 46 H 0.132 0.868 47 H 0.136 0.864 48 H 0.140 0.860 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.371 -13.849 -22.084 28.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.038 4.038 3 C -0.230 4.230 4 N -0.277 5.277 5 C 0.095 3.905 6 C -0.558 4.558 7 H 0.071 0.929 8 C -0.188 4.188 9 N -0.569 5.569 10 Si 0.783 3.217 11 H -0.201 1.201 12 H -0.203 1.203 13 H -0.201 1.201 14 C 0.082 3.918 15 N -0.313 5.313 16 C 0.400 3.600 17 O -0.450 6.450 18 N -0.371 5.371 19 C 0.006 3.994 20 H 0.170 0.830 21 C -0.108 4.108 22 C -0.091 4.091 23 C -0.144 4.144 24 C -0.146 4.146 25 C -0.146 4.146 26 C -0.143 4.143 27 C -0.135 4.135 28 C 0.312 3.688 29 O -0.357 6.357 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.061 0.939 37 H -0.007 1.007 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.293 0.707 43 H 0.132 0.868 44 H 0.100 0.900 45 H 0.140 0.860 46 H 0.150 0.850 47 H 0.154 0.846 48 H 0.157 0.843 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.976 -13.684 -21.630 27.470 hybrid contribution 0.271 0.091 1.418 1.446 sum 10.247 -13.593 -20.213 26.426 Atomic orbital electron populations 1.21758 0.94066 1.01607 1.01610 1.21857 0.96411 0.92976 0.92516 1.22318 1.00706 0.97732 1.02236 1.61884 1.12771 1.49351 1.03658 1.19293 0.94995 0.90977 0.85279 1.21475 1.43275 0.98165 0.92886 0.92926 1.25679 0.95082 0.96503 1.01530 1.70037 1.46040 1.16340 1.24515 0.85632 0.78521 0.78890 0.78700 1.20061 1.20274 1.20141 1.21791 0.90474 0.84459 0.95086 1.46622 1.65092 1.08983 1.10566 1.16072 0.77322 0.81380 0.85263 1.91036 1.55611 1.81609 1.16721 1.45466 1.76266 1.09528 1.05868 1.22156 1.02668 0.86668 0.87939 0.83030 1.20729 0.92873 0.94799 1.02369 1.19654 1.00307 0.94360 0.94795 1.21257 0.99728 0.93689 0.99679 1.21402 1.00009 0.96095 0.97133 1.21479 0.98587 1.00634 0.93913 1.21458 0.98999 0.93366 1.00517 1.21348 0.99523 0.96833 0.95769 1.21321 0.74015 0.92345 0.81127 1.90768 1.48257 1.39567 1.57119 0.94120 0.90140 0.93128 0.90144 0.93252 0.90334 0.93854 1.00711 0.95627 0.92720 0.89775 0.90534 0.70742 0.86779 0.90040 0.85971 0.84973 0.84620 0.84255 0.84112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.64 9.18 71.98 0.66 -3.98 16 2 C 0.07 2.59 2.88 44.91 0.13 2.72 16 3 C -0.17 -5.89 8.54 71.98 0.61 -5.27 16 4 N -0.55 -24.28 4.46 -887.80 -3.96 -28.25 16 5 C 0.22 11.66 3.26 85.56 0.28 11.94 16 6 C -0.52 -30.71 8.53 25.60 0.22 -30.49 16 7 H 0.05 3.26 7.81 -2.91 -0.02 3.24 16 8 C 0.01 0.61 5.46 84.66 0.46 1.07 16 9 N -0.93 -56.33 13.29 21.45 0.28 -56.04 16 10 Si 0.96 47.29 29.54 68.60 2.03 49.31 16 11 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 14 C 0.29 11.79 5.20 170.81 0.89 12.68 16 15 N -0.57 -18.90 2.82 -783.56 -2.21 -21.11 16 16 C 0.70 23.65 8.62 179.44 1.55 25.19 16 17 O -0.57 -25.64 17.48 -3.83 -0.07 -25.71 16 18 N -0.71 -15.38 5.90 -459.63 -2.71 -18.09 16 19 C 0.11 2.00 3.67 44.37 0.16 2.16 16 20 H 0.15 1.96 8.14 -2.39 -0.02 1.94 16 21 C -0.07 -0.92 5.11 29.85 0.15 -0.76 16 22 C -0.09 -1.15 4.98 -19.87 -0.10 -1.25 16 23 C -0.13 -1.69 8.91 22.27 0.20 -1.49 16 24 C -0.13 -1.59 10.05 22.27 0.22 -1.36 16 25 C -0.13 -1.42 10.05 22.27 0.22 -1.20 16 26 C -0.13 -1.31 10.05 22.27 0.22 -1.09 16 27 C -0.12 -1.28 9.70 22.27 0.22 -1.06 16 28 C 0.52 13.85 6.88 87.94 0.60 14.45 16 29 O -0.49 -14.19 16.26 -2.90 -0.05 -14.24 16 30 H 0.04 1.61 6.29 -2.39 -0.02 1.60 16 31 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.08 2.80 5.54 -2.39 -0.01 2.78 16 34 H 0.05 1.67 6.48 -2.39 -0.02 1.65 16 35 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.04 1.68 6.74 -2.39 -0.02 1.66 16 37 H -0.02 -1.38 7.33 -2.39 -0.02 -1.40 16 38 H 0.03 1.45 5.89 -2.38 -0.01 1.44 16 39 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 40 H 0.08 3.90 6.98 -2.39 -0.02 3.89 16 41 H 0.08 2.85 6.02 -2.39 -0.01 2.84 16 42 H 0.45 7.96 8.33 -92.70 -0.77 7.19 16 43 H 0.11 1.24 8.09 -2.38 -0.02 1.22 16 44 H 0.08 1.19 8.08 -2.38 -0.02 1.17 16 45 H 0.12 1.63 8.06 -2.91 -0.02 1.60 16 46 H 0.13 1.28 8.06 -2.91 -0.02 1.25 16 47 H 0.14 1.00 8.06 -2.91 -0.02 0.98 16 48 H 0.14 0.91 8.06 -2.91 -0.02 0.88 16 49 H 0.14 1.03 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -74.47 396.89 0.22 -74.25 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.20 Total: 17.62 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 6.71 Total: 22.26 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -8.60 Total: -123.49 kcal Atomic # 8 Polarization: -39.83 SS G_CDS: -0.11 Total: -39.95 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.31 kcal Total: -74.47 0.22 -74.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739842108.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.258 kcal (2) G-P(sol) polarization free energy of solvation -74.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds