Wall clock time and date at job start Wed Apr 1 2020 03:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47100 * 2 1 4 4 N 1.46500 * 109.47232 * 119.99977 * 2 1 3 5 5 C 1.46507 * 119.99538 * 331.26298 * 4 2 1 6 6 C 1.50700 * 109.46982 * 269.99750 * 5 4 2 7 7 H 1.08004 * 119.99871 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00049 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00137 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99924 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47220 * 90.00042 * 10 8 6 12 12 H 1.48507 * 109.47243 * 209.99723 * 10 8 6 13 13 H 1.48499 * 109.47537 * 329.99902 * 10 8 6 14 14 C 1.34778 * 120.00470 * 151.26045 * 4 2 1 15 15 O 1.21354 * 119.99930 * 177.77210 * 14 4 2 16 16 C 1.49366 * 119.99546 * 357.77165 * 14 4 2 17 17 O 1.21358 * 120.00549 * 8.04545 * 16 14 4 18 18 N 1.34778 * 119.99563 * 188.05313 * 16 14 4 19 19 C 1.39251 * 119.99682 * 186.14405 * 18 16 14 20 20 C 1.39098 * 119.78382 * 174.92803 * 19 18 16 21 21 C 1.38118 * 118.77398 * 180.10805 * 20 19 18 22 22 C 1.39378 * 118.98468 * 359.90450 * 21 20 19 23 23 C 1.37545 * 119.29369 * 359.93323 * 22 21 20 24 24 N 1.32023 * 119.78365 * 354.94062 * 19 18 16 25 25 C 1.50732 * 122.34731 * 180.41357 * 23 22 21 26 26 C 1.52719 * 110.58302 * 342.10810 * 25 23 22 27 27 C 1.53322 * 108.42075 * 51.29685 * 26 25 23 28 28 C 1.50512 * 117.87920 * 179.71914 * 22 21 20 29 29 H 1.08993 * 109.47365 * 309.18209 * 1 2 3 30 30 H 1.09005 * 109.46956 * 69.18853 * 1 2 3 31 31 H 1.09001 * 109.47295 * 189.18123 * 1 2 3 32 32 H 1.09000 * 109.47170 * 239.99792 * 2 1 3 33 33 H 1.09007 * 109.47279 * 169.83868 * 3 2 1 34 34 H 1.08997 * 109.47420 * 289.83845 * 3 2 1 35 35 H 1.09000 * 109.47322 * 49.84203 * 3 2 1 36 36 H 1.08994 * 109.47526 * 29.99660 * 5 4 2 37 37 H 1.09000 * 109.46671 * 150.00139 * 5 4 2 38 38 H 0.97000 * 119.99971 * 179.97438 * 9 8 6 39 39 H 0.96996 * 120.00613 * 6.13926 * 18 16 14 40 40 H 1.08002 * 120.61206 * 0.13500 * 20 19 18 41 41 H 1.08004 * 120.50332 * 180.17351 * 21 20 19 42 42 H 1.09004 * 109.25187 * 221.82532 * 25 23 22 43 43 H 1.09002 * 109.22862 * 102.37663 * 25 23 22 44 44 H 1.08997 * 109.67621 * 291.55759 * 26 25 23 45 45 H 1.09003 * 109.67616 * 171.02790 * 26 25 23 46 46 H 1.09004 * 109.68594 * 170.43779 * 27 26 25 47 47 H 1.09000 * 109.69217 * 49.85926 * 27 26 25 48 48 H 1.09001 * 109.25576 * 282.96827 * 28 22 21 49 49 H 1.09003 * 109.25941 * 42.40095 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.2136 -0.6930 2.4204 6 6 1.5817 0.4989 3.2659 7 1 2.3391 1.1894 2.9251 8 6 0.9517 0.7080 4.4743 9 7 0.0291 -0.1325 4.8890 10 14 1.4076 2.1858 5.5219 11 1 0.5449 3.3376 5.1553 12 1 1.2096 1.8559 6.9563 13 1 2.8308 2.5390 5.2872 14 6 3.2078 -1.3238 1.1704 15 8 3.6309 -1.8613 2.1728 16 6 4.0053 -1.3638 -0.0919 17 8 3.6569 -0.7068 -1.0509 18 7 5.1118 -2.1298 -0.1659 19 6 5.9256 -2.0702 -1.2943 20 6 7.1207 -2.7814 -1.3226 21 6 7.9129 -2.7056 -2.4514 22 6 7.4883 -1.9220 -3.5231 23 6 6.2937 -1.2466 -3.4312 24 7 5.5580 -1.3387 -2.3301 25 6 5.7646 -0.3878 -4.5513 26 6 6.8819 -0.0341 -5.5305 27 6 7.5931 -1.3285 -5.9422 28 6 8.3739 -1.8520 -4.7381 29 1 -0.3634 0.6492 0.7965 30 1 -0.3633 0.3651 -0.9607 31 1 -0.3634 -1.0145 0.1640 32 1 1.8933 -0.5139 -0.8900 33 1 3.1148 1.4479 0.1813 34 1 1.8323 1.9013 -0.9666 35 1 1.5363 2.0060 0.7854 36 1 0.1563 -0.6413 2.1604 37 1 1.4059 -1.6085 2.9798 38 1 -0.4138 0.0144 5.7393 39 1 5.3413 -2.7226 0.5668 40 1 7.4232 -3.3823 -0.4777 41 1 8.8450 -3.2486 -2.5045 42 1 5.3478 0.5293 -4.1350 43 1 4.9813 -0.9306 -5.0805 44 1 7.5924 0.6380 -5.0493 45 1 6.4587 0.4483 -6.4116 46 1 8.2791 -1.1250 -6.7645 47 1 6.8565 -2.0696 -6.2525 48 1 9.2111 -1.1843 -4.5347 49 1 8.7557 -2.8480 -4.9626 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873818009.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:58 Heat of formation + Delta-G solvation = -21.738849 kcal Electronic energy + Delta-G solvation = -30786.388662 eV Core-core repulsion = 26713.910694 eV Total energy + Delta-G solvation = -4072.477969 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.16867 -40.10563 -38.18598 -36.86868 -36.19223 -34.24647 -33.40734 -32.80350 -30.85319 -30.11534 -29.63022 -27.93955 -26.52966 -25.37348 -23.95848 -23.21593 -22.86790 -22.06614 -20.79236 -20.25744 -19.22302 -17.56156 -17.20823 -16.54042 -16.38522 -16.03146 -15.81383 -15.36494 -14.86434 -14.76800 -14.46233 -14.34844 -14.14954 -13.94063 -13.71179 -13.51976 -13.38312 -13.19136 -12.91087 -12.47407 -12.35715 -12.27198 -12.14725 -11.78466 -11.67230 -11.20774 -11.19977 -11.11729 -11.02183 -10.92853 -10.84881 -10.64347 -10.49103 -10.47379 -10.18224 -10.00917 -9.73028 -9.59564 -9.45462 -8.52197 -8.43605 -8.18820 -7.75535 -6.05959 -4.09668 0.91499 1.17017 2.04963 2.59273 3.30165 3.36656 3.41434 3.57944 3.78539 3.91885 4.22540 4.40646 4.43879 4.57007 4.61451 4.73908 4.75588 4.80894 4.98281 5.14552 5.27999 5.28846 5.29754 5.46497 5.48577 5.53175 5.56334 5.67844 5.73180 5.75583 5.83055 5.87461 5.96868 6.02538 6.15419 6.17580 6.22022 6.32847 6.45271 6.51965 6.66123 6.79128 6.91140 6.97305 7.09596 7.35280 7.41545 7.82799 7.92224 8.17677 8.19400 8.29082 8.68252 8.95057 9.54439 11.02312 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018645 B = 0.002606 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.397421 B =10742.648696 C =11280.245826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.117 3.883 3 C -0.144 4.144 4 N -0.552 5.552 5 C 0.237 3.763 6 C -0.522 4.522 7 H 0.059 0.941 8 C 0.062 3.938 9 N -0.895 5.895 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.494 3.506 15 O -0.527 6.527 16 C 0.497 3.503 17 O -0.445 6.445 18 N -0.642 5.642 19 C 0.370 3.630 20 C -0.208 4.208 21 C -0.049 4.049 22 C -0.167 4.167 23 C 0.169 3.831 24 N -0.481 5.481 25 C -0.068 4.068 26 C -0.119 4.119 27 C -0.121 4.121 28 C -0.069 4.069 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.109 0.891 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.044 0.956 38 H 0.263 0.737 39 H 0.427 0.573 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.074 0.926 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.305 -4.327 -21.176 25.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.014 3.986 3 C -0.203 4.203 4 N -0.283 5.283 5 C 0.119 3.881 6 C -0.560 4.560 7 H 0.078 0.922 8 C -0.140 4.140 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.275 3.725 15 O -0.405 6.405 16 C 0.278 3.722 17 O -0.313 6.313 18 N -0.291 5.291 19 C 0.137 3.863 20 C -0.231 4.231 21 C -0.075 4.075 22 C -0.170 4.170 23 C 0.032 3.968 24 N -0.196 5.196 25 C -0.106 4.106 26 C -0.157 4.157 27 C -0.159 4.159 28 C -0.107 4.107 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.126 0.874 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.266 0.734 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.092 0.908 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.211 -3.653 -21.039 25.110 hybrid contribution 1.127 0.023 1.299 1.720 sum 14.338 -3.630 -19.740 24.666 Atomic orbital electron populations 1.22114 0.94879 1.02482 1.01963 1.21670 0.94422 0.94118 0.88438 1.22032 1.01049 0.96074 1.01096 1.48376 1.17387 1.47710 1.14870 1.19562 0.90560 0.98643 0.79382 1.21381 1.21731 1.09218 1.03699 0.92250 1.24907 0.95007 0.96744 0.97347 1.69926 1.25534 1.36378 1.21538 0.86511 0.78912 0.82579 0.79534 1.20613 1.21112 1.19902 1.19578 0.83333 0.82204 0.87411 1.90734 1.68699 1.46450 1.34585 1.21100 0.81386 0.80010 0.89660 1.90709 1.64525 1.38559 1.37516 1.43406 1.24059 1.43218 1.18389 1.18322 0.88481 0.92470 0.87061 1.21470 0.95435 1.05091 1.01101 1.21316 0.98657 0.95939 0.91624 1.20346 0.97558 1.01423 0.97689 1.20902 0.89695 0.93925 0.92266 1.67485 1.33623 1.19079 0.99389 1.20358 0.98055 0.99322 0.92854 1.21574 0.97674 0.97539 0.98875 1.21575 0.99543 0.97603 0.97162 1.20313 0.96898 1.01679 0.91784 0.90926 0.92363 0.92556 0.87369 0.93326 0.92862 0.91758 0.93346 0.93810 0.92709 0.73401 0.84435 0.84639 0.89382 0.89801 0.91493 0.90914 0.91322 0.91507 0.90806 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 7.93 37.16 0.29 -2.40 16 2 C 0.12 2.19 2.64 -67.93 -0.18 2.01 16 3 C -0.14 -2.66 9.01 37.16 0.33 -2.32 16 4 N -0.55 -12.17 2.41 -168.01 -0.40 -12.57 16 5 C 0.24 6.10 4.80 -5.19 -0.02 6.07 16 6 C -0.52 -14.57 9.39 -34.44 -0.32 -14.89 16 7 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 10 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 13 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 14 C 0.49 10.64 7.73 -11.62 -0.09 10.55 16 15 O -0.53 -12.58 16.12 5.49 0.09 -12.49 16 16 C 0.50 9.13 7.70 -11.62 -0.09 9.04 16 17 O -0.45 -8.46 10.59 5.49 0.06 -8.40 16 18 N -0.64 -9.78 5.36 -11.93 -0.06 -9.84 16 19 C 0.37 5.30 7.42 -155.11 -1.15 4.15 16 20 C -0.21 -2.25 9.96 -39.31 -0.39 -2.64 16 21 C -0.05 -0.46 9.74 -39.20 -0.38 -0.84 16 22 C -0.17 -1.67 5.74 -104.54 -0.60 -2.27 16 23 C 0.17 2.09 6.62 -82.43 -0.55 1.55 16 24 N -0.48 -7.41 7.72 -8.64 -0.07 -7.48 16 25 C -0.07 -0.69 5.91 -28.01 -0.17 -0.85 16 26 C -0.12 -0.85 5.97 -26.71 -0.16 -1.01 16 27 C -0.12 -0.77 5.98 -26.69 -0.16 -0.93 16 28 C -0.07 -0.48 5.68 -28.10 -0.16 -0.64 16 29 H 0.07 1.38 7.23 -51.93 -0.38 1.00 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.96 7.85 -51.93 -0.41 0.55 16 32 H 0.11 2.00 5.15 -52.12 -0.27 1.73 16 33 H 0.05 0.95 7.74 -51.93 -0.40 0.55 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 1.26 8.03 -51.93 -0.42 0.85 16 36 H 0.05 1.24 5.70 -51.93 -0.30 0.95 16 37 H 0.04 1.25 7.45 -51.93 -0.39 0.87 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.43 5.63 8.23 -40.82 -0.34 5.29 16 40 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.14 0.85 8.06 -52.48 -0.42 0.42 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 48 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 LS Contribution 394.96 15.07 5.95 5.95 Total: -1.00 -33.18 394.96 -10.11 -43.30 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.50 Total: 3.91 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -3.89 Total: 6.21 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 0.20 Total: -55.30 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: 0.15 Total: -20.89 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.18 -10.11 -43.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873818009.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.557 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds